Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SLC6A1P30531 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SLC6A1P30531 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.09■□□□□ 0.97
SLC6A1P30531 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.09■□□□□ 0.97
SLC6A1P30531 AP004609.3-201ENST00000610705 1884 ntBASIC21.09■□□□□ 0.97
SLC6A1P30531 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.09■□□□□ 0.97
SLC6A1P30531 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.09■□□□□ 0.97
SLC6A1P30531 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SLC6A1P30531 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SLC6A1P30531 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
SLC6A1P30531 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SLC6A1P30531 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SLC6A1P30531 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.07■□□□□ 0.96
SLC6A1P30531 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC6A1P30531 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC6A1P30531 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC6A1P30531 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.06■□□□□ 0.96
SLC6A1P30531 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC6A1P30531 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.06■□□□□ 0.96
SLC6A1P30531 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SLC6A1P30531 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.05■□□□□ 0.96
SLC6A1P30531 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC6A1P30531 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC6A1P30531 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC6A1P30531 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SLC6A1P30531 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SLC6A1P30531 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SLC6A1P30531 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.05■□□□□ 0.96
SLC6A1P30531 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC6A1P30531 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC6A1P30531 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SLC6A1P30531 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SLC6A1P30531 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SLC6A1P30531 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC6A1P30531 MIR762-201ENST00000390236 83 ntBASIC21.04■□□□□ 0.96
SLC6A1P30531 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.04■□□□□ 0.96
SLC6A1P30531 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SLC6A1P30531 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC6A1P30531 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SLC6A1P30531 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC6A1P30531 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC6A1P30531 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SLC6A1P30531 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC6A1P30531 LINC00543-201ENST00000567234 1845 ntBASIC21.03■□□□□ 0.96
SLC6A1P30531 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SLC6A1P30531 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SLC6A1P30531 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC6A1P30531 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SLC6A1P30531 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC6A1P30531 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC6A1P30531 AC005559.1-201ENST00000589661 871 ntBASIC21.02■□□□□ 0.96
SLC6A1P30531 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC6A1P30531 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC6A1P30531 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.01■□□□□ 0.95
SLC6A1P30531 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC6A1P30531 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC6A1P30531 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC6A1P30531 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC6A1P30531 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC6A1P30531 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC6A1P30531 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC6A1P30531 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC6A1P30531 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SLC6A1P30531 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21■□□□□ 0.95
SLC6A1P30531 AC138932.3-201ENST00000567634 1902 ntBASIC21■□□□□ 0.95
SLC6A1P30531 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SLC6A1P30531 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SLC6A1P30531 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC6A1P30531 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SLC6A1P30531 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.99■□□□□ 0.95
SLC6A1P30531 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC6A1P30531 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC6A1P30531 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.99■□□□□ 0.95
SLC6A1P30531 AC068473.5-201ENST00000616428 2072 ntBASIC20.99■□□□□ 0.95
SLC6A1P30531 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC6A1P30531 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SLC6A1P30531 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SLC6A1P30531 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC6A1P30531 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SLC6A1P30531 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC6A1P30531 AC079834.2-201ENST00000609776 1949 ntBASIC20.98■□□□□ 0.95
SLC6A1P30531 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC6A1P30531 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC6A1P30531 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SLC6A1P30531 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC6A1P30531 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC6A1P30531 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC6A1P30531 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.97■□□□□ 0.95
SLC6A1P30531 AC044849.2-201ENST00000606596 710 ntBASIC20.97■□□□□ 0.95
SLC6A1P30531 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SLC6A1P30531 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.97■□□□□ 0.95
SLC6A1P30531 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.97■□□□□ 0.95
SLC6A1P30531 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SLC6A1P30531 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.96■□□□□ 0.95
SLC6A1P30531 AC022211.4-201ENST00000625094 2161 ntBASIC20.96■□□□□ 0.95
SLC6A1P30531 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SLC6A1P30531 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SLC6A1P30531 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.96■□□□□ 0.95
SLC6A1P30531 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SLC6A1P30531 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms