RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 NISCHQ9Y2I1 1504 aa47.81■■■■■ 5.24
VPS53-211ENST00000571805 CCDC180Q9P1Z9 1646 aa40.78■■■■■ 4.12
VPS53-211ENST00000571805 ZCCHC6Q5VYS8 1495 aaKnown RBP40.44■■■■■ 4.06
VPS53-211ENST00000571805 SHROOM4Q9ULL8 1493 aa40.41■■■■■ 4.06
VPS53-211ENST00000571805 SUPT5HO00267 1087 aaKnown RBP39.6■■■■□ 3.93
VPS53-211ENST00000571805 DCAF8L2P0C7V8 631 aa39.35■■■■□ 3.89
VPS53-211ENST00000571805 DCAF1Q9Y4B6 1507 aa39.34■■■■□ 3.89
VPS53-211ENST00000571805 CHIC1Q5VXU3 224 aa38.6■■■■□ 3.77
VPS53-211ENST00000571805 MYO15BQ96JP2 1530 aa38.42■■■■□ 3.74
VPS53-211ENST00000571805 ABCC9O60706 1549 aa38.12■■■■□ 3.69
VPS53-211ENST00000571805 SCRIBQ14160 1630 aa38.03■■■■□ 3.68
VPS53-211ENST00000571805 RSF1Q96T23 1441 aaPredicted RBP37.76■■■■□ 3.64
VPS53-211ENST00000571805 NACADO15069 1562 aa37.69■■■■□ 3.62
VPS53-211ENST00000571805 RB1CC1Q8TDY2 1594 aa37.37■■■■□ 3.57
VPS53-211ENST00000571805 LOC105371045A0A1W2PR82 267 aa37.36■■■■□ 3.57
VPS53-211ENST00000571805 CECR2Q9BXF3 1484 aa37.23■■■■□ 3.55
VPS53-211ENST00000571805 HRCP23327 699 aa37.22■■■■□ 3.55
VPS53-211ENST00000571805 PCGF6Q9BYE7 350 aa37.18■■■■□ 3.54
VPS53-211ENST00000571805 MROH2BQ7Z745 1585 aa37.12■■■■□ 3.53
VPS53-211ENST00000571805 TRIM41Q8WV44 630 aa36.97■■■■□ 3.51
VPS53-211ENST00000571805 WIZO95785 1651 aa36.92■■■■□ 3.5
VPS53-211ENST00000571805 BAZ1AQ9NRL2 1556 aaPredicted RBP36.73■■■■□ 3.47
VPS53-211ENST00000571805 TRIM26Q12899 539 aaPredicted RBP36.62■■■■□ 3.45
VPS53-211ENST00000571805 FAM9AQ8IZU1 332 aaPredicted RBP36.55■■■■□ 3.44
VPS53-211ENST00000571805 UNC13AQ9UPW8 1703 aa36.54■■■■□ 3.44
VPS53-211ENST00000571805 EIF4G1Q04637 1599 aaKnown RBP36.47■■■■□ 3.43
VPS53-211ENST00000571805 SMARCA4P51532 1647 aa36.43■■■■□ 3.42
VPS53-211ENST00000571805 TOP2AP11388 1531 aaKnown RBP36.39■■■■□ 3.42
VPS53-211ENST00000571805 PPARGC1BQ86YN6 1023 aaKnown RBP36.35■■■■□ 3.41
VPS53-211ENST00000571805 CCDC88BA6NC98 1476 aa36.19■■■■□ 3.38
VPS53-211ENST00000571805 SMARCA2P51531 1590 aa36.18■■■■□ 3.38
VPS53-211ENST00000571805 EHMT2Q96KQ7 1210 aa36.13■■■■□ 3.37
VPS53-211ENST00000571805 BICRAQ9NZM4 1560 aa36.08■■■■□ 3.37
VPS53-211ENST00000571805 ABCC8Q09428 1581 aa36■■■■□ 3.35
VPS53-211ENST00000571805 PABPN1Q86U42 306 aaKnown RBP eCLIP35.92■■■■□ 3.34
VPS53-211ENST00000571805 PEG3Q9GZU2 1588 aa35.82■■■■□ 3.33
VPS53-211ENST00000571805 ZEB1P37275 1124 aaPredicted RBP35.79■■■■□ 3.32
VPS53-211ENST00000571805 SOGA1O94964 1423 aa35.65■■■■□ 3.3
VPS53-211ENST00000571805 EEA1Q15075 1411 aa35.56■■■■□ 3.28
VPS53-211ENST00000571805 ATAD2BQ9ULI0 1458 aa35.5■■■■□ 3.27
VPS53-211ENST00000571805 WRNQ14191 1432 aaPredicted RBP eCLIP35.48■■■■□ 3.27
VPS53-211ENST00000571805 RUSC2Q8N2Y8 1516 aa35.48■■■■□ 3.27
VPS53-211ENST00000571805 TNIKQ9UKE5 1360 aa35.46■■■■□ 3.27
VPS53-211ENST00000571805 CEP162Q5TB80 1403 aa35.45■■■■□ 3.27
VPS53-211ENST00000571805 CSRNP3Q8WYN3 585 aa35.45■■■■□ 3.27
VPS53-211ENST00000571805 BAZ1BQ9UIG0 1483 aaKnown RBP35.35■■■■□ 3.25
VPS53-211ENST00000571805 SYNJ1O43426 1573 aa35.3■■■■□ 3.24
VPS53-211ENST00000571805 GOLGA3Q08378 1498 aa35.25■■■■□ 3.23
VPS53-211ENST00000571805 UBTFP17480 764 aaKnown RBP35.2■■■■□ 3.22
VPS53-211ENST00000571805 KIF21BO75037 1637 aa35.09■■■■□ 3.21
VPS53-211ENST00000571805 CEP164Q9UPV0 1460 aa35.08■■■■□ 3.21
VPS53-211ENST00000571805 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.08■■■■□ 3.21
VPS53-211ENST00000571805 CCER1Q8TC90 406 aaPredicted RBP34.98■■■■□ 3.19
VPS53-211ENST00000571805 TTBK1Q5TCY1 1321 aaPredicted RBP34.96■■■■□ 3.19
VPS53-211ENST00000571805 TOP2BQ02880 1626 aa34.93■■■■□ 3.18
VPS53-211ENST00000571805 HMGXB3Q12766 1538 aa34.87■■■■□ 3.17
VPS53-211ENST00000571805 NCAPD3P42695 1498 aa34.86■■■■□ 3.17
VPS53-211ENST00000571805 BIVM-ERCC5R4GMW8 1640 aa34.83■■■■□ 3.17
VPS53-211ENST00000571805 CLIP1P30622 1438 aa34.81■■■■□ 3.16
VPS53-211ENST00000571805 RAPGEF2Q9Y4G8 1499 aa34.8■■■■□ 3.16
VPS53-211ENST00000571805 VPS8Q8N3P4 1428 aa34.68■■■■□ 3.14
VPS53-211ENST00000571805 CUX1P39880 1505 aa34.57■■■■□ 3.12
VPS53-211ENST00000571805 ERICH3Q5RHP9 1530 aa34.56■■■■□ 3.12
VPS53-211ENST00000571805 PRXQ9BXM0 1461 aa34.55■■■■□ 3.12
VPS53-211ENST00000571805 CFTRP13569 1480 aa34.54■■■■□ 3.12
VPS53-211ENST00000571805 APLP2Q06481 763 aa34.39■■■■□ 3.1
VPS53-211ENST00000571805 RANGAP1P46060 587 aaPredicted RBP34.38■■■■□ 3.09
VPS53-211ENST00000571805 KIF27Q86VH2 1401 aa34.36■■■■□ 3.09
VPS53-211ENST00000571805 PRDM2Q13029 1718 aa34.33■■■■□ 3.09
VPS53-211ENST00000571805 HNRNPUL2Q1KMD3 747 aaKnown RBP34.33■■■■□ 3.09
VPS53-211ENST00000571805 ARAP1Q96P48 1450 aa34.31■■■■□ 3.08
VPS53-211ENST00000571805 DIEXFQ68CQ4 756 aaKnown RBP34.27■■■■□ 3.08
VPS53-211ENST00000571805 SCAF1Q9H7N4 1312 aaKnown RBP34.17■■■■□ 3.06
VPS53-211ENST00000571805 CADPSQ9ULU8 1353 aa34.13■■■■□ 3.05
VPS53-211ENST00000571805 ZNF316A6NFI3 1004 aaPredicted RBP34.1■■■■□ 3.05
VPS53-211ENST00000571805 KANK4Q5T7N3 995 aaPredicted RBP34.04■■■■□ 3.04
VPS53-211ENST00000571805 ARHGAP35Q9NRY4 1499 aa34.03■■■■□ 3.04
VPS53-211ENST00000571805 IGF1RP08069 1367 aa34.02■■■■□ 3.04
VPS53-211ENST00000571805 CUX2O14529 1486 aa34.02■■■■□ 3.04
VPS53-211ENST00000571805 CC2D2AQ9P2K1 1620 aa34.01■■■■□ 3.04
VPS53-211ENST00000571805 FGD5Q6ZNL6 1462 aa33.94■■■■□ 3.02
VPS53-211ENST00000571805 ACIN1Q9UKV3 1341 aaKnown RBP33.93■■■■□ 3.02
VPS53-211ENST00000571805 RRBP1Q9P2E9 1410 aaKnown RBP33.9■■■■□ 3.02
VPS53-211ENST00000571805 NEUROD1Q13562 356 aa33.86■■■■□ 3.01
VPS53-211ENST00000571805 CARMIL1Q5VZK9 1371 aa33.84■■■■□ 3.01
VPS53-211ENST00000571805 CLSPNQ9HAW4 1339 aa33.8■■■■□ 3
VPS53-211ENST00000571805 DHX57Q6P158 1386 aaKnown RBP33.79■■■■□ 3
VPS53-211ENST00000571805 FANCD2Q9BXW9 1451 aa33.79■■■■□ 3
VPS53-211ENST00000571805 CENPBP07199 599 aaPredicted RBP33.73■■■□□ 2.99
VPS53-211ENST00000571805 MAP3K1Q13233 1512 aa33.7■■■□□ 2.99
VPS53-211ENST00000571805 CCNB3Q8WWL7 1395 aa33.7■■■□□ 2.99
VPS53-211ENST00000571805 DNMBPQ6XZF7 1577 aa33.67■■■□□ 2.98
VPS53-211ENST00000571805 TIAM1Q13009 1591 aa33.66■■■□□ 2.98
VPS53-211ENST00000571805 ABCA10Q8WWZ4 1543 aa33.6■■■□□ 2.97
VPS53-211ENST00000571805 TOPBP1Q92547 1522 aa33.59■■■□□ 2.97
VPS53-211ENST00000571805 RAD54L2Q9Y4B4 1467 aa33.58■■■□□ 2.97
VPS53-211ENST00000571805 POLA1P09884 1462 aaPredicted RBP33.56■■■□□ 2.96
VPS53-211ENST00000571805 MIER1Q8N108 512 aa33.55■■■□□ 2.96
VPS53-211ENST00000571805 NESP48681 1621 aa33.55■■■□□ 2.96
VPS53-211ENST00000571805 LRRC9Q6ZRR7 1453 aa33.52■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms