Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC30.59■■■□□ 2.49
COL4A1P02462 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL4A1P02462 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC30.59■■■□□ 2.49
COL4A1P02462 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL4A1P02462 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL4A1P02462 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL4A1P02462 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC30.58■■■□□ 2.49
COL4A1P02462 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL4A1P02462 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC30.58■■■□□ 2.49
COL4A1P02462 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
COL4A1P02462 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
COL4A1P02462 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC30.57■■■□□ 2.48
COL4A1P02462 AL035685.1-201ENST00000636663 812 ntBASIC30.57■■■□□ 2.48
COL4A1P02462 PROC-203ENST00000409048 1586 ntTSL 5 BASIC30.56■■■□□ 2.48
COL4A1P02462 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC30.56■■■□□ 2.48
COL4A1P02462 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
COL4A1P02462 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
COL4A1P02462 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
COL4A1P02462 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
COL4A1P02462 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC30.56■■■□□ 2.48
COL4A1P02462 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC30.56■■■□□ 2.48
COL4A1P02462 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC30.56■■■□□ 2.48
COL4A1P02462 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL4A1P02462 KRT8P33-201ENST00000508125 1423 ntBASIC30.56■■■□□ 2.48
COL4A1P02462 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
COL4A1P02462 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC30.55■■■□□ 2.48
COL4A1P02462 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL4A1P02462 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL4A1P02462 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC30.55■■■□□ 2.48
COL4A1P02462 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC30.55■■■□□ 2.48
COL4A1P02462 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC30.54■■■□□ 2.48
COL4A1P02462 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
COL4A1P02462 AC103834.1-201ENST00000520383 144 ntBASIC30.54■■■□□ 2.48
COL4A1P02462 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
COL4A1P02462 MIR6765-201ENST00000614092 87 ntBASIC30.53■■■□□ 2.48
COL4A1P02462 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL4A1P02462 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC30.53■■■□□ 2.48
COL4A1P02462 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
COL4A1P02462 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC30.52■■■□□ 2.48
COL4A1P02462 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
COL4A1P02462 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC30.52■■■□□ 2.48
COL4A1P02462 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
COL4A1P02462 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC30.52■■■□□ 2.48
COL4A1P02462 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
COL4A1P02462 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
COL4A1P02462 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
COL4A1P02462 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC30.51■■■□□ 2.47
COL4A1P02462 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC30.51■■■□□ 2.47
COL4A1P02462 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
COL4A1P02462 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
COL4A1P02462 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL4A1P02462 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A1P02462 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.49■■■□□ 2.47
COL4A1P02462 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A1P02462 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC30.49■■■□□ 2.47
COL4A1P02462 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A1P02462 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A1P02462 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
COL4A1P02462 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC30.48■■■□□ 2.47
COL4A1P02462 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
COL4A1P02462 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
COL4A1P02462 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL4A1P02462 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL4A1P02462 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC30.47■■■□□ 2.47
COL4A1P02462 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
COL4A1P02462 AC009299.2-201ENST00000482477 511 ntBASIC30.46■■■□□ 2.47
COL4A1P02462 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
COL4A1P02462 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.46
COL4A1P02462 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.46
COL4A1P02462 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.46
COL4A1P02462 TRIR-205ENST00000592273 783 ntTSL 3 BASIC30.44■■■□□ 2.46
COL4A1P02462 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
COL4A1P02462 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC30.43■■■□□ 2.46
COL4A1P02462 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL4A1P02462 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL4A1P02462 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC30.42■■■□□ 2.46
COL4A1P02462 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC30.42■■■□□ 2.46
COL4A1P02462 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
COL4A1P02462 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC30.42■■■□□ 2.46
COL4A1P02462 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
COL4A1P02462 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.42■■■□□ 2.46
COL4A1P02462 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL4A1P02462 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL4A1P02462 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC30.42■■■□□ 2.46
COL4A1P02462 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
COL4A1P02462 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC30.42■■■□□ 2.46
COL4A1P02462 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC30.41■■■□□ 2.46
COL4A1P02462 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC30.41■■■□□ 2.46
COL4A1P02462 AL449106.1-201ENST00000608517 1980 ntBASIC30.41■■■□□ 2.46
COL4A1P02462 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL4A1P02462 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL4A1P02462 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC30.4■■■□□ 2.46
COL4A1P02462 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL4A1P02462 IDNK-203ENST00000405990 629 ntTSL 2 BASIC30.39■■■□□ 2.46
COL4A1P02462 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
COL4A1P02462 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC30.39■■■□□ 2.46
COL4A1P02462 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC30.39■■■□□ 2.46
COL4A1P02462 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.39■■■□□ 2.45
COL4A1P02462 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL4A1P02462 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms