Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC18.37■□□□□ 0.53
HLA-DQA1P01909 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DQA1P01909 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
HLA-DQA1P01909 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.37■□□□□ 0.53
HLA-DQA1P01909 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DQA1P01909 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DQA1P01909 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DQA1P01909 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DQA1P01909 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DQA1P01909 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DQA1P01909 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DQA1P01909 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC18.36■□□□□ 0.53
HLA-DQA1P01909 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DQA1P01909 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.35■□□□□ 0.53
HLA-DQA1P01909 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DQA1P01909 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC18.35■□□□□ 0.53
HLA-DQA1P01909 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DQA1P01909 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DQA1P01909 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DQA1P01909 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
HLA-DQA1P01909 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
HLA-DQA1P01909 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DQA1P01909 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DQA1P01909 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.53
HLA-DQA1P01909 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.33■□□□□ 0.52
HLA-DQA1P01909 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.33■□□□□ 0.52
HLA-DQA1P01909 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC18.33■□□□□ 0.52
HLA-DQA1P01909 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.33■□□□□ 0.52
HLA-DQA1P01909 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DQA1P01909 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC18.32■□□□□ 0.52
HLA-DQA1P01909 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.32■□□□□ 0.52
HLA-DQA1P01909 KLF16-203ENST00000592313 508 ntTSL 3 BASIC18.32■□□□□ 0.52
HLA-DQA1P01909 AP004609.3-201ENST00000610705 1884 ntBASIC18.32■□□□□ 0.52
HLA-DQA1P01909 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DQA1P01909 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DQA1P01909 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DQA1P01909 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
HLA-DQA1P01909 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DQA1P01909 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HLA-DQA1P01909 AC068473.5-201ENST00000616428 2072 ntBASIC18.31■□□□□ 0.52
HLA-DQA1P01909 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DQA1P01909 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HLA-DQA1P01909 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DQA1P01909 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DQA1P01909 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
HLA-DQA1P01909 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DQA1P01909 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DQA1P01909 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DQA1P01909 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DQA1P01909 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DQA1P01909 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DQA1P01909 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DQA1P01909 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DQA1P01909 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DQA1P01909 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
HLA-DQA1P01909 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DQA1P01909 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
HLA-DQA1P01909 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
HLA-DQA1P01909 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DQA1P01909 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DQA1P01909 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DQA1P01909 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DQA1P01909 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC18.27■□□□□ 0.52
HLA-DQA1P01909 RARRES2P7-201ENST00000567349 469 ntBASIC18.27■□□□□ 0.52
HLA-DQA1P01909 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DQA1P01909 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.27■□□□□ 0.51
HLA-DQA1P01909 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DQA1P01909 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DQA1P01909 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DQA1P01909 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DQA1P01909 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DQA1P01909 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DQA1P01909 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DQA1P01909 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DQA1P01909 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.26■□□□□ 0.51
HLA-DQA1P01909 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DQA1P01909 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DQA1P01909 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DQA1P01909 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DQA1P01909 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DQA1P01909 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DQA1P01909 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DQA1P01909 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DQA1P01909 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.25■□□□□ 0.51
HLA-DQA1P01909 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DQA1P01909 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DQA1P01909 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DQA1P01909 AC138932.3-201ENST00000567634 1902 ntBASIC18.24■□□□□ 0.51
HLA-DQA1P01909 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DQA1P01909 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DQA1P01909 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DQA1P01909 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
HLA-DQA1P01909 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC18.23■□□□□ 0.51
HLA-DQA1P01909 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.23■□□□□ 0.51
HLA-DQA1P01909 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DQA1P01909 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DQA1P01909 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DQA1P01909 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC18.23■□□□□ 0.51
HLA-DQA1P01909 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DQA1P01909 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 8.8 ms