Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC29.84■■■□□ 2.376e-8■■□□□ 13.4
UPF1Q92900 EML2-215ENST00000588308 2062 ntTSL 223.56■■□□□ 1.366e-8■■□□□ 13.4
UPF1Q92900 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC23.44■■□□□ 1.346e-8■■□□□ 13.4
UPF1Q92900 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.216e-8■■□□□ 13.4
UPF1Q92900 EML2-205ENST00000586195 1952 ntTSL 222.15■■□□□ 1.146e-8■■□□□ 13.4
UPF1Q92900 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC21.61■■□□□ 1.056e-8■■□□□ 13.4
UPF1Q92900 DIABLO-202ENST00000342392 1336 ntTSL 1 (best)21.61■■□□□ 1.056e-8■■□□□ 13.4
UPF1Q92900 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.956e-8■■□□□ 13.4
UPF1Q92900 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.48■□□□□ 0.556e-8■■□□□ 13.4
UPF1Q92900 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.512e-6■■□□□ 13.4
UPF1Q92900 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.386e-8■■□□□ 13.4
UPF1Q92900 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.37■□□□□ 0.376e-8■■□□□ 13.4
UPF1Q92900 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.226e-8■■□□□ 13.4
UPF1Q92900 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.216e-8■■□□□ 13.4
UPF1Q92900 CENPN-209ENST00000569461 329 ntTSL 315.04■□□□□ -06e-8■■□□□ 13.4
UPF1Q92900 C11orf57-203ENST00000420986 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.473e-6■■□□□ 13.4
UPF1Q92900 SMIM7-218ENST00000599872 621 ntTSL 312□□□□□ -0.496e-8■■□□□ 13.4
UPF1Q92900 AC048338.1-201ENST00000535844 2748 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.556e-8■■□□□ 13.4
UPF1Q92900 CENPN-204ENST00000428963 971 ntTSL 2 BASIC11.59□□□□□ -0.556e-8■■□□□ 13.4
UPF1Q92900 CENPN-206ENST00000562943 461 ntTSL 210.58□□□□□ -0.726e-8■■□□□ 13.4
UPF1Q92900 C11orf57-202ENST00000393047 3669 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.733e-6■■□□□ 13.4
UPF1Q92900 C11orf57-209ENST00000532163 3739 ntTSL 2 BASIC9.46□□□□□ -0.93e-6■■□□□ 13.4
UPF1Q92900 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC9.37□□□□□ -0.916e-8■■□□□ 13.4
UPF1Q92900 C11orf57-201ENST00000280352 3693 ntAPPRIS ALT1 TSL 2 BASIC9.18□□□□□ -0.943e-6■■□□□ 13.4
UPF1Q92900 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.342e-6■■□□□ 13.4
UPF1Q92900 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC16.31■□□□□ 0.27e-7■■□□□ 13.4
UPF1Q92900 ATP7B-210ENST00000634296 2328 ntTSL 515.5■□□□□ 0.072e-8■■□□□ 13.4
UPF1Q92900 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.452e-6■■□□□ 13.3
UPF1Q92900 TESMIN-208ENST00000544398 644 ntTSL 314.54□□□□□ -0.082e-6■■□□□ 13.3
UPF1Q92900 TESMIN-207ENST00000543240 843 ntTSL 314.17□□□□□ -0.142e-6■■□□□ 13.3
UPF1Q92900 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.231e-7■■□□□ 13.3
UPF1Q92900 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.161e-7■■□□□ 13.3
UPF1Q92900 CD46-202ENST00000322918 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.754e-12■■□□□ 13.3
UPF1Q92900 CD46-205ENST00000358170 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.094e-12■■□□□ 13.3
UPF1Q92900 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC8.21□□□□□ -1.14e-12■■□□□ 13.3
UPF1Q92900 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.14e-12■■□□□ 13.3
UPF1Q92900 CD46-206ENST00000360212 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.114e-12■■□□□ 13.3
UPF1Q92900 CD46-209ENST00000367047 3089 ntTSL 5 BASIC8.08□□□□□ -1.124e-12■■□□□ 13.3
UPF1Q92900 CD46-208ENST00000367042 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.124e-12■■□□□ 13.3
UPF1Q92900 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.224e-12■■□□□ 13.3
UPF1Q92900 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.254e-12■■□□□ 13.3
UPF1Q92900 CD46-210ENST00000462968 473 ntTSL 37.19□□□□□ -1.264e-12■■□□□ 13.3
UPF1Q92900 CD46-212ENST00000469535 7826 ntTSL 1 (best)7.1□□□□□ -1.274e-12■■□□□ 13.3
UPF1Q92900 KMT2A-201ENST00000389506 13655 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.632e-8■■□□□ 13.3
UPF1Q92900 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.132e-8■■□□□ 13.3
UPF1Q92900 HMBOX1-203ENST00000397358 4082 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.357e-8■■□□□ 13.3
UPF1Q92900 HMBOX1-201ENST00000287701 3184 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.767e-8■■□□□ 13.3
UPF1Q92900 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.373e-6■■□□□ 13.3
UPF1Q92900 LDLRAP1-207ENST00000488127 4670 ntTSL 212.42□□□□□ -0.423e-6■■□□□ 13.3
UPF1Q92900 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.67■■□□□ 1.221e-8■■□□□ 13.3
UPF1Q92900 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC22.42■■□□□ 1.181e-8■■□□□ 13.3
UPF1Q92900 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.28■□□□□ 0.681e-8■■□□□ 13.3
UPF1Q92900 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.551e-8■■□□□ 13.3
UPF1Q92900 SEPT8-210ENST00000448933 4270 ntTSL 1 (best) BASIC11.31□□□□□ -0.61e-8■■□□□ 13.3
UPF1Q92900 GNA11-204ENST00000587636 733 ntTSL 523.03■■□□□ 1.284e-7■■□□□ 13.3
UPF1Q92900 GNA11-206ENST00000590534 2676 ntTSL 218.22■□□□□ 0.514e-7■■□□□ 13.3
UPF1Q92900 SORBS1-220ENST00000634504 1847 ntTSL 217.88■□□□□ 0.458e-13■■□□□ 13.3
UPF1Q92900 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.218e-13■■□□□ 13.3
UPF1Q92900 CLTC-215ENST00000621829 8587 ntAPPRIS ALT1 TSL 2 BASIC11.2□□□□□ -0.622e-36■■□□□ 13.3
UPF1Q92900 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.192e-36■■□□□ 13.3
UPF1Q92900 CLTC-209ENST00000498711 2941 ntTSL 1 (best)5.59□□□□□ -1.512e-36■■□□□ 13.3
UPF1Q92900 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.252e-8■■□□□ 13.3
UPF1Q92900 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.232e-8■■□□□ 13.3
UPF1Q92900 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC16.29■□□□□ 0.22e-8■■□□□ 13.3
UPF1Q92900 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.082e-8■■□□□ 13.3
UPF1Q92900 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.042e-8■■□□□ 13.3
UPF1Q92900 DSN1-202ENST00000373740 1922 ntAPPRIS ALT2 TSL 3 BASIC13.88□□□□□ -0.192e-8■■□□□ 13.3
UPF1Q92900 DSN1-208ENST00000473615 2075 ntTSL 213.73□□□□□ -0.212e-8■■□□□ 13.3
UPF1Q92900 DSN1-209ENST00000480153 2447 ntTSL 1 (best)11.58□□□□□ -0.562e-8■■□□□ 13.3
UPF1Q92900 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.21e-8■■□□□ 13.3
UPF1Q92900 GPBP1L1-202ENST00000355105 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.454e-6■■□□□ 13.3
UPF1Q92900 GPBP1L1-201ENST00000290795 3599 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.134e-6■■□□□ 13.3
UPF1Q92900 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.4■□□□□ 0.548e-30■■□□□ 13.3
UPF1Q92900 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.22■□□□□ 0.358e-30■■□□□ 13.3
UPF1Q92900 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.62□□□□□ -0.238e-30■■□□□ 13.3
UPF1Q92900 RTN4-206ENST00000394611 4161 ntTSL 1 (best) BASIC9.82□□□□□ -0.848e-30■■□□□ 13.3
UPF1Q92900 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.948e-30■■□□□ 13.3
UPF1Q92900 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.68□□□□□ -1.348e-30■■□□□ 13.3
UPF1Q92900 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.49□□□□□ -1.698e-30■■□□□ 13.3
UPF1Q92900 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.84□□□□□ -1.88e-30■■□□□ 13.3
UPF1Q92900 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC22.45■■□□□ 1.191e-6■■□□□ 13.3
UPF1Q92900 LGMN-210ENST00000555169 543 ntTSL 221.71■■□□□ 1.071e-6■■□□□ 13.3
UPF1Q92900 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC21.71■■□□□ 1.071e-6■■□□□ 13.3
UPF1Q92900 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.861e-6■■□□□ 13.3
UPF1Q92900 LGMN-217ENST00000557609 1832 ntTSL 519.72■□□□□ 0.751e-6■■□□□ 13.3
UPF1Q92900 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.51e-6■■□□□ 13.3
UPF1Q92900 RAB5B-206ENST00000549505 3148 ntTSL 1 (best)11.02□□□□□ -0.653e-9■■□□□ 13.3
UPF1Q92900 RAB5B-210ENST00000553116 3322 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.93e-9■■□□□ 13.3
UPF1Q92900 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.13e-9■■□□□ 13.3
UPF1Q92900 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.448e-7■■□□□ 13.3
UPF1Q92900 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.966e-7■■□□□ 13.3
UPF1Q92900 KIF13A-206ENST00000502297 4009 ntTSL 58.54□□□□□ -1.046e-7■■□□□ 13.3
UPF1Q92900 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.065e-12■■□□□ 13.3
UPF1Q92900 DCAF10-205ENST00000483167 2496 ntTSL 1 (best)10.04□□□□□ -0.85e-12■■□□□ 13.3
UPF1Q92900 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC7.96□□□□□ -1.145e-12■■□□□ 13.3
UPF1Q92900 SENP1-210ENST00000552189 4967 ntTSL 1 (best)9.08□□□□□ -0.961e-6■■□□□ 13.2
UPF1Q92900 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC7.24□□□□□ -1.251e-6■■□□□ 13.2
UPF1Q92900 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.261e-6■■□□□ 13.2
UPF1Q92900 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.051e-6■■□□□ 13.2
UPF1Q92900 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.121e-6■■□□□ 13.2
Retrieved 100 of 15,879 protein–RNA pairs in 72.9 ms