RNA–Protein interactions for RNA: ENST00000498711.1

CLTC-209, Transcript of clathrin heavy chain, humanhuman

TSL 1 (best)

Gene CLTC, Length 2,941 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTC-209ENST00000498711 CHIC1Q5VXU3 224 aa11.07□□□□□ -0.64
CLTC-209ENST00000498711 AEBP2Q6ZN18 517 aaPredicted RBP10.91□□□□□ -0.66
CLTC-209ENST00000498711 PHF23Q9BUL5 403 aaPredicted RBP9.78□□□□□ -0.84
CLTC-209ENST00000498711 SENP3Q9H4L4 574 aaPredicted RBP9.52□□□□□ -0.89
CLTC-209ENST00000498711 PLPPR3Q6T4P5 718 aa9.22□□□□□ -0.93
CLTC-209ENST00000498711 FOXD1Q16676 465 aa8.7□□□□□ -1.02
CLTC-209ENST00000498711 ADRA2BP18089 450 aa8.6□□□□□ -1.03
CLTC-209ENST00000498711 EHMT2Q96KQ7 1210 aa8.56□□□□□ -1.04
CLTC-209ENST00000498711 KCNA4P22459 653 aa8.54□□□□□ -1.04
CLTC-209ENST00000498711 PPP6R1Q9UPN7 881 aa8.46□□□□□ -1.06
CLTC-209ENST00000498711 MSH5O43196 834 aa8.33□□□□□ -1.08
CLTC-209ENST00000498711 NISCHQ9Y2I1 1504 aa8.29□□□□□ -1.08
CLTC-209ENST00000498711 SLC4A1APQ9BWU0 796 aaKnown RBP8.23□□□□□ -1.09
CLTC-209ENST00000498711 CSRNP3Q8WYN3 585 aa8.22□□□□□ -1.09
CLTC-209ENST00000498711 POTEDQ86YR6 584 aa8.2□□□□□ -1.1
CLTC-209ENST00000498711 PPP4R3CPQ6ZMV5 832 aa8.17□□□□□ -1.1
CLTC-209ENST00000498711 PIAS4Q8N2W9 510 aaPredicted RBP8.12□□□□□ -1.11
CLTC-209ENST00000498711 NCBP3Q53F19 620 aaKnown RBP8.11□□□□□ -1.11
CLTC-209ENST00000498711 NPM3O75607 178 aaKnown RBP7.99□□□□□ -1.13
CLTC-209ENST00000498711 ZBTB22O15209 634 aa7.87□□□□□ -1.15
CLTC-209ENST00000498711 CNKSR2Q8WXI2 1034 aa7.85□□□□□ -1.15
CLTC-209ENST00000498711 SCAF1Q9H7N4 1312 aaKnown RBP7.79□□□□□ -1.16
CLTC-209ENST00000498711 FOXD4L1Q9NU39 408 aa7.73□□□□□ -1.17
CLTC-209ENST00000498711 DNAJC5BQ9UF47 199 aa7.69□□□□□ -1.18
CLTC-209ENST00000498711 SLC24A1O60721 1099 aa7.68□□□□□ -1.18
CLTC-209ENST00000498711 CCDC180Q9P1Z9 1646 aa7.64□□□□□ -1.19
CLTC-209ENST00000498711 AMER1Q5JTC6 1135 aaPredicted RBP7.63□□□□□ -1.19
CLTC-209ENST00000498711 RTN4Q9NQC3 1192 aaKnown RBP7.61□□□□□ -1.19
CLTC-209ENST00000498711 RNF216Q9NWF9 866 aaPredicted RBP7.58□□□□□ -1.2
CLTC-209ENST00000498711 DMRT2Q9Y5R5 561 aa7.56□□□□□ -1.2
CLTC-209ENST00000498711 MAPK8IP2Q13387 824 aaPredicted RBP7.55□□□□□ -1.2
CLTC-209ENST00000498711 ATXN8OSP0DMR3 200 aa7.42□□□□□ -1.22
CLTC-209ENST00000498711 SLC4A2P04920 1241 aa7.41□□□□□ -1.22
CLTC-209ENST00000498711 HOXD11P31277 338 aaPredicted RBP7.41□□□□□ -1.22
CLTC-209ENST00000498711 FKBP8Q14318 412 aa7.41□□□□□ -1.22
CLTC-209ENST00000498711 MYCNP04198 464 aaPredicted RBP7.38□□□□□ -1.23
CLTC-209ENST00000498711 MYO15BQ96JP2 1530 aa7.18□□□□□ -1.26
CLTC-209ENST00000498711 ATF5Q9Y2D1 282 aaPredicted RBP7.13□□□□□ -1.27
CLTC-209ENST00000498711 NACADO15069 1562 aa7.11□□□□□ -1.27
CLTC-209ENST00000498711 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.11□□□□□ -1.27
CLTC-209ENST00000498711 HNRNPUL2Q1KMD3 747 aaKnown RBP7.11□□□□□ -1.27
CLTC-209ENST00000498711 ABCC9O60706 1549 aa7.1□□□□□ -1.27
CLTC-209ENST00000498711 SAMD1Q6SPF0 538 aaPredicted RBP7.09□□□□□ -1.27
CLTC-209ENST00000498711 RB1CC1Q8TDY2 1594 aa7.09□□□□□ -1.27
CLTC-209ENST00000498711 DCAF1Q9Y4B6 1507 aa7.07□□□□□ -1.28
CLTC-209ENST00000498711 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.06□□□□□ -1.282e-12■□□□□ 8.6
CLTC-209ENST00000498711 SHROOM4Q9ULL8 1493 aa7.04□□□□□ -1.28
CLTC-209ENST00000498711 RNF39Q9H2S5 420 aa7.03□□□□□ -1.28
CLTC-209ENST00000498711 FBXO3Q9UK99 471 aa7.03□□□□□ -1.28
CLTC-209ENST00000498711 DCAF8L1A6NGE4 600 aa7.02□□□□□ -1.29
CLTC-209ENST00000498711 C1QBPQ07021 282 aaKnown RBP7.02□□□□□ -1.29
CLTC-209ENST00000498711 PLCB2Q00722 1185 aa7.01□□□□□ -1.29
CLTC-209ENST00000498711 U3KPZ7 1027 aaPredicted RBP7□□□□□ -1.29
CLTC-209ENST00000498711 ZNF219Q9P2Y4 722 aaPredicted RBP6.97□□□□□ -1.29
CLTC-209ENST00000498711 ZCCHC6Q5VYS8 1495 aaKnown RBP6.94□□□□□ -1.3
CLTC-209ENST00000498711 SPDYE4A6NLX3 237 aa6.94□□□□□ -1.3
CLTC-209ENST00000498711 CACNB1Q02641 598 aaPredicted RBP6.92□□□□□ -1.3
CLTC-209ENST00000498711 APLP2Q06481 763 aa6.91□□□□□ -1.3
CLTC-209ENST00000498711 VASPP50552 380 aaPredicted RBP6.91□□□□□ -1.3
CLTC-209ENST00000498711 HAP1P54257 671 aaPredicted RBP6.9□□□□□ -1.3
CLTC-209ENST00000498711 PROM2Q8N271 834 aa6.9□□□□□ -1.31
CLTC-209ENST00000498711 UNC13AQ9UPW8 1703 aa6.89□□□□□ -1.31
CLTC-209ENST00000498711 DCAF8L2P0C7V8 631 aa6.87□□□□□ -1.31
CLTC-209ENST00000498711 BCANQ96GW7 911 aa6.87□□□□□ -1.31
CLTC-209ENST00000498711 MKRN4PQ13434 485 aaPredicted RBP6.84□□□□□ -1.31
CLTC-209ENST00000498711 IFNLR1Q8IU57 520 aaPredicted RBP6.84□□□□□ -1.31
CLTC-209ENST00000498711 FBLN2P98095 1184 aa6.82□□□□□ -1.32
CLTC-209ENST00000498711 VSIG10Q8N0Z9 540 aa6.81□□□□□ -1.32
CLTC-209ENST00000498711 BICRAQ9NZM4 1560 aa6.81□□□□□ -1.32
CLTC-209ENST00000498711 PKD2Q13563 968 aa6.8□□□□□ -1.32
CLTC-209ENST00000498711 TAOK2Q9UL54 1235 aa6.77□□□□□ -1.33
CLTC-209ENST00000498711 PRKCSHP14314 528 aaPredicted RBP6.76□□□□□ -1.33
CLTC-209ENST00000498711 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.73□□□□□ -1.33
CLTC-209ENST00000498711 BBXQ8WY36 941 aaPredicted RBP6.72□□□□□ -1.33
CLTC-209ENST00000498711 POLA2Q14181 598 aa6.7□□□□□ -1.34
CLTC-209ENST00000498711 TRHP20396 242 aaPredicted RBP6.7□□□□□ -1.34
CLTC-209ENST00000498711 SPOCK2Q92563 424 aa6.69□□□□□ -1.34
CLTC-209ENST00000498711 ECM2O94769 699 aaPredicted RBP6.68□□□□□ -1.34
CLTC-209ENST00000498711 KDM2AQ9Y2K7 1162 aa6.68□□□□□ -1.34
CLTC-209ENST00000498711 KLHL34Q8N239 644 aa6.67□□□□□ -1.34
CLTC-209ENST00000498711 PAXIP1Q6ZW49 1069 aaPredicted RBP6.66□□□□□ -1.34
CLTC-209ENST00000498711 TPRNQ4KMQ1 711 aa6.66□□□□□ -1.34
CLTC-209ENST00000498711 SPINK5Q9NQ38 1064 aaPredicted RBP6.66□□□□□ -1.34
CLTC-209ENST00000498711 CFAP44Q96MT7 982 aa6.65□□□□□ -1.34
CLTC-209ENST00000498711 ZBTB12Q9Y330 459 aaPredicted RBP6.65□□□□□ -1.35
CLTC-209ENST00000498711 NPM1P06748 294 aaKnown RBP eCLIP6.64□□□□□ -1.35
CLTC-209ENST00000498711 SCRIBQ14160 1630 aa6.64□□□□□ -1.35
CLTC-209ENST00000498711 EIF4G1Q04637 1599 aaKnown RBP6.63□□□□□ -1.35
CLTC-209ENST00000498711 CAPN15O75808 1086 aa6.61□□□□□ -1.35
CLTC-209ENST00000498711 STAG3Q9UJ98 1225 aa6.6□□□□□ -1.35
CLTC-209ENST00000498711 SPRYD3Q8NCJ5 442 aa6.6□□□□□ -1.35
CLTC-209ENST00000498711 RGL2O15211 777 aa6.59□□□□□ -1.35
CLTC-209ENST00000498711 CC2D2AQ9P2K1 1620 aa6.58□□□□□ -1.36
CLTC-209ENST00000498711 PLCD3Q8N3E9 789 aa6.57□□□□□ -1.36
CLTC-209ENST00000498711 TSHZ2Q9NRE2 1034 aa6.56□□□□□ -1.36
CLTC-209ENST00000498711 SMARCA2P51531 1590 aa6.55□□□□□ -1.36
CLTC-209ENST00000498711 PEG3Q9GZU2 1588 aa6.55□□□□□ -1.36
CLTC-209ENST00000498711 DSG3P32926 999 aa6.55□□□□□ -1.36
CLTC-209ENST00000498711 ZNF692Q9BU19 519 aaPredicted RBP6.54□□□□□ -1.36
CLTC-209ENST00000498711 HMGXB3Q12766 1538 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms