RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 NISCHQ9Y2I1 1504 aa38.88■■■■□ 3.81
RTN4-201ENST00000317610 SHROOM4Q9ULL8 1493 aa33.13■■■□□ 2.89
RTN4-201ENST00000317610 CCDC180Q9P1Z9 1646 aa33■■■□□ 2.87
RTN4-201ENST00000317610 ZCCHC6Q5VYS8 1495 aaKnown RBP33■■■□□ 2.87
RTN4-201ENST00000317610 SUPT5HO00267 1087 aaKnown RBP32.65■■■□□ 2.82
RTN4-201ENST00000317610 MYO15BQ96JP2 1530 aa32.09■■■□□ 2.73
RTN4-201ENST00000317610 CHIC1Q5VXU3 224 aa32.09■■■□□ 2.73
RTN4-201ENST00000317610 DCAF1Q9Y4B6 1507 aa32.03■■■□□ 2.72
RTN4-201ENST00000317610 HRCP23327 699 aa31.76■■■□□ 2.67
RTN4-201ENST00000317610 DCAF8L2P0C7V8 631 aa31.75■■■□□ 2.67
RTN4-201ENST00000317610 PCGF6Q9BYE7 350 aa31.35■■■□□ 2.61
RTN4-201ENST00000317610 ABCC9O60706 1549 aa31.22■■■□□ 2.59
RTN4-201ENST00000317610 LOC105371045A0A1W2PR82 267 aa31.03■■■□□ 2.56
RTN4-201ENST00000317610 PPARGC1BQ86YN6 1023 aaKnown RBP30.87■■■□□ 2.53
RTN4-201ENST00000317610 RSF1Q96T23 1441 aaPredicted RBP30.87■■■□□ 2.53
RTN4-201ENST00000317610 SCRIBQ14160 1630 aa30.8■■■□□ 2.52
RTN4-201ENST00000317610 TRIM26Q12899 539 aaPredicted RBP30.79■■■□□ 2.52
RTN4-201ENST00000317610 RB1CC1Q8TDY2 1594 aa30.66■■■□□ 2.5
RTN4-201ENST00000317610 TRIM41Q8WV44 630 aa30.47■■■□□ 2.47
RTN4-201ENST00000317610 NACADO15069 1562 aa30.36■■■□□ 2.45
RTN4-201ENST00000317610 ZEB1P37275 1124 aaPredicted RBP30.35■■■□□ 2.45
RTN4-201ENST00000317610 CECR2Q9BXF3 1484 aa30.21■■■□□ 2.43
RTN4-201ENST00000317610 MROH2BQ7Z745 1585 aa30.2■■■□□ 2.42
RTN4-201ENST00000317610 FAM9AQ8IZU1 332 aaPredicted RBP30.11■■■□□ 2.41
RTN4-201ENST00000317610 WIZO95785 1651 aa30.06■■■□□ 2.4
RTN4-201ENST00000317610 BAZ1AQ9NRL2 1556 aaPredicted RBP30■■■□□ 2.39
RTN4-201ENST00000317610 EIF4G1Q04637 1599 aaKnown RBP29.97■■■□□ 2.39
RTN4-201ENST00000317610 EHMT2Q96KQ7 1210 aa29.72■■■□□ 2.35
RTN4-201ENST00000317610 TOP2AP11388 1531 aaKnown RBP29.66■■■□□ 2.34
RTN4-201ENST00000317610 SMARCA4P51532 1647 aa29.55■■■□□ 2.32
RTN4-201ENST00000317610 WRNQ14191 1432 aaPredicted RBP eCLIP29.52■■■□□ 2.32
RTN4-201ENST00000317610 SMARCA2P51531 1590 aa29.5■■■□□ 2.31
RTN4-201ENST00000317610 CCDC88BA6NC98 1476 aa29.48■■■□□ 2.31
RTN4-201ENST00000317610 ABCC8Q09428 1581 aa29.47■■■□□ 2.31
RTN4-201ENST00000317610 SCAF1Q9H7N4 1312 aaKnown RBP29.43■■■□□ 2.3
RTN4-201ENST00000317610 PELP1Q8IZL8 1130 aaKnown RBP29.39■■■□□ 2.3
RTN4-201ENST00000317610 UNC13AQ9UPW8 1703 aa29.37■■■□□ 2.29
RTN4-201ENST00000317610 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.37■■■□□ 2.29
RTN4-201ENST00000317610 CCER1Q8TC90 406 aaPredicted RBP29.34■■■□□ 2.29
RTN4-201ENST00000317610 CEP162Q5TB80 1403 aa29.34■■■□□ 2.29
RTN4-201ENST00000317610 EEA1Q15075 1411 aa29.32■■■□□ 2.28
RTN4-201ENST00000317610 TNIKQ9UKE5 1360 aa29.31■■■□□ 2.28
RTN4-201ENST00000317610 SOGA1O94964 1423 aa29.25■■■□□ 2.27
RTN4-201ENST00000317610 CSRNP3Q8WYN3 585 aa29.12■■■□□ 2.25
RTN4-201ENST00000317610 RUSC2Q8N2Y8 1516 aa29.09■■■□□ 2.25
RTN4-201ENST00000317610 ACIN1Q9UKV3 1341 aaKnown RBP29.08■■■□□ 2.25
RTN4-201ENST00000317610 GOLGA3Q08378 1498 aa29.07■■■□□ 2.24
RTN4-201ENST00000317610 PEG3Q9GZU2 1588 aa29.05■■■□□ 2.24
RTN4-201ENST00000317610 DIEXFQ68CQ4 756 aaKnown RBP29.02■■■□□ 2.24
RTN4-201ENST00000317610 BICRAQ9NZM4 1560 aa28.95■■■□□ 2.23
RTN4-201ENST00000317610 NEUROD1Q13562 356 aa28.94■■■□□ 2.22
RTN4-201ENST00000317610 UBTFP17480 764 aaKnown RBP28.93■■■□□ 2.22
RTN4-201ENST00000317610 KIF21BO75037 1637 aa28.92■■■□□ 2.22
RTN4-201ENST00000317610 TTBK1Q5TCY1 1321 aaPredicted RBP28.9■■■□□ 2.22
RTN4-201ENST00000317610 CEP164Q9UPV0 1460 aa28.88■■■□□ 2.21
RTN4-201ENST00000317610 SYNJ1O43426 1573 aa28.85■■■□□ 2.21
RTN4-201ENST00000317610 CENPBP07199 599 aaPredicted RBP28.83■■■□□ 2.21
RTN4-201ENST00000317610 ZNF316A6NFI3 1004 aaPredicted RBP28.75■■■□□ 2.19
RTN4-201ENST00000317610 BAZ1BQ9UIG0 1483 aaKnown RBP28.74■■■□□ 2.19
RTN4-201ENST00000317610 CLIP1P30622 1438 aa28.7■■■□□ 2.18
RTN4-201ENST00000317610 VPS8Q8N3P4 1428 aa28.68■■■□□ 2.18
RTN4-201ENST00000317610 PABPN1Q86U42 306 aaKnown RBP eCLIP28.66■■■□□ 2.18
RTN4-201ENST00000317610 GTF3C3Q9Y5Q9 886 aa28.66■■■□□ 2.18
RTN4-201ENST00000317610 ATAD2BQ9ULI0 1458 aa28.66■■■□□ 2.18
RTN4-201ENST00000317610 RAPGEF2Q9Y4G8 1499 aa28.56■■■□□ 2.16
RTN4-201ENST00000317610 TOP2BQ02880 1626 aa28.51■■■□□ 2.16
RTN4-201ENST00000317610 HNRNPUL2Q1KMD3 747 aaKnown RBP28.48■■■□□ 2.15
RTN4-201ENST00000317610 BIVM-ERCC5R4GMW8 1640 aa28.45■■■□□ 2.14
RTN4-201ENST00000317610 ERICH3Q5RHP9 1530 aa28.39■■■□□ 2.14
RTN4-201ENST00000317610 APLP2Q06481 763 aa28.39■■■□□ 2.14
RTN4-201ENST00000317610 MIER1Q8N108 512 aa28.33■■■□□ 2.13
RTN4-201ENST00000317610 PRXQ9BXM0 1461 aa28.31■■■□□ 2.12
RTN4-201ENST00000317610 CLSPNQ9HAW4 1339 aa28.29■■■□□ 2.12
RTN4-201ENST00000317610 ARAP1Q96P48 1450 aa28.26■■■□□ 2.11
RTN4-201ENST00000317610 YTHDC1Q96MU7 727 aaKnown RBP28.2■■■□□ 2.11
RTN4-201ENST00000317610 DHX57Q6P158 1386 aaKnown RBP28.17■■■□□ 2.1
RTN4-201ENST00000317610 HMGXB3Q12766 1538 aa28.14■■■□□ 2.09
RTN4-201ENST00000317610 CUX1P39880 1505 aa28.11■■■□□ 2.09
RTN4-201ENST00000317610 RRBP1Q9P2E9 1410 aaKnown RBP28.11■■■□□ 2.09
RTN4-201ENST00000317610 RANGAP1P46060 587 aaPredicted RBP28.1■■■□□ 2.09
RTN4-201ENST00000317610 NCAPD3P42695 1498 aa28.07■■■□□ 2.08
RTN4-201ENST00000317610 CUX2O14529 1486 aa28.06■■■□□ 2.08
RTN4-201ENST00000317610 KIF27Q86VH2 1401 aa28.04■■■□□ 2.08
RTN4-201ENST00000317610 MYT1Q01538 1121 aa28.02■■■□□ 2.08
RTN4-201ENST00000317610 KANK4Q5T7N3 995 aaPredicted RBP28.02■■■□□ 2.08
RTN4-201ENST00000317610 CFTRP13569 1480 aa27.94■■■□□ 2.06
RTN4-201ENST00000317610 ARHGAP35Q9NRY4 1499 aa27.93■■■□□ 2.06
RTN4-201ENST00000317610 CCNB3Q8WWL7 1395 aa27.88■■■□□ 2.05
RTN4-201ENST00000317610 PRDM2Q13029 1718 aa27.86■■■□□ 2.05
RTN4-201ENST00000317610 MAP3K1Q13233 1512 aa27.82■■■□□ 2.04
RTN4-201ENST00000317610 TIAM1Q13009 1591 aa27.74■■■□□ 2.03
RTN4-201ENST00000317610 MAPKBP1O60336 1514 aa27.69■■■□□ 2.02
RTN4-201ENST00000317610 IGF1RP08069 1367 aa27.69■■■□□ 2.02
RTN4-201ENST00000317610 RAB3GAP2Q9H2M9 1393 aa27.66■■■□□ 2.02
RTN4-201ENST00000317610 SUPT16HQ9Y5B9 1047 aaKnown RBP27.6■■■□□ 2.01
RTN4-201ENST00000317610 LRRC9Q6ZRR7 1453 aa27.6■■■□□ 2.01
RTN4-201ENST00000317610 CFAP43Q8NDM7 1665 aa27.57■■■□□ 2
RTN4-201ENST00000317610 SETD5Q9C0A6 1442 aa27.57■■■□□ 2
RTN4-201ENST00000317610 CARMIL1Q5VZK9 1371 aa27.56■■■□□ 2
RTN4-201ENST00000317610 ITGAEP38570 1179 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms