RNA–Protein interactions for RNA: ENST00000357732.8

RTN4-204, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,390 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-204ENST00000357732 NISCHQ9Y2I1 1504 aa36.15■■■■□ 3.38
RTN4-204ENST00000357732 CCDC180Q9P1Z9 1646 aa30.82■■■□□ 2.52
RTN4-204ENST00000357732 SHROOM4Q9ULL8 1493 aa30.79■■■□□ 2.52
RTN4-204ENST00000357732 ZCCHC6Q5VYS8 1495 aaKnown RBP30.68■■■□□ 2.5
RTN4-204ENST00000357732 SUPT5HO00267 1087 aaKnown RBP30.19■■■□□ 2.42
RTN4-204ENST00000357732 DCAF1Q9Y4B6 1507 aa29.91■■■□□ 2.38
RTN4-204ENST00000357732 DCAF8L2P0C7V8 631 aa29.88■■■□□ 2.37
RTN4-204ENST00000357732 CHIC1Q5VXU3 224 aa29.63■■■□□ 2.33
RTN4-204ENST00000357732 MYO15BQ96JP2 1530 aa29.52■■■□□ 2.32
RTN4-204ENST00000357732 HRCP23327 699 aa29.26■■■□□ 2.28
RTN4-204ENST00000357732 ABCC9O60706 1549 aa29.03■■■□□ 2.24
RTN4-204ENST00000357732 PCGF6Q9BYE7 350 aa28.85■■■□□ 2.21
RTN4-204ENST00000357732 SCRIBQ14160 1630 aa28.75■■■□□ 2.19
RTN4-204ENST00000357732 RSF1Q96T23 1441 aaPredicted RBP28.63■■■□□ 2.17
RTN4-204ENST00000357732 LOC105371045A0A1W2PR82 267 aa28.54■■■□□ 2.16
RTN4-204ENST00000357732 RB1CC1Q8TDY2 1594 aa28.5■■■□□ 2.15
RTN4-204ENST00000357732 TRIM26Q12899 539 aaPredicted RBP28.49■■■□□ 2.15
RTN4-204ENST00000357732 NACADO15069 1562 aa28.36■■■□□ 2.13
RTN4-204ENST00000357732 PPARGC1BQ86YN6 1023 aaKnown RBP28.25■■■□□ 2.11
RTN4-204ENST00000357732 TRIM41Q8WV44 630 aa28.23■■■□□ 2.11
RTN4-204ENST00000357732 ZEB1P37275 1124 aaPredicted RBP28.17■■■□□ 2.1
RTN4-204ENST00000357732 CECR2Q9BXF3 1484 aa28.15■■■□□ 2.1
RTN4-204ENST00000357732 MROH2BQ7Z745 1585 aa28.06■■■□□ 2.08
RTN4-204ENST00000357732 WIZO95785 1651 aa27.9■■■□□ 2.06
RTN4-204ENST00000357732 BAZ1AQ9NRL2 1556 aaPredicted RBP27.9■■■□□ 2.06
RTN4-204ENST00000357732 FAM9AQ8IZU1 332 aaPredicted RBP27.89■■■□□ 2.06
RTN4-204ENST00000357732 EIF4G1Q04637 1599 aaKnown RBP27.78■■■□□ 2.04
RTN4-204ENST00000357732 EHMT2Q96KQ7 1210 aa27.66■■■□□ 2.02
RTN4-204ENST00000357732 TOP2AP11388 1531 aaKnown RBP27.59■■■□□ 2.01
RTN4-204ENST00000357732 SMARCA4P51532 1647 aa27.48■■□□□ 1.99
RTN4-204ENST00000357732 UNC13AQ9UPW8 1703 aa27.43■■□□□ 1.98
RTN4-204ENST00000357732 WRNQ14191 1432 aaPredicted RBP eCLIP27.41■■□□□ 1.98
RTN4-204ENST00000357732 SMARCA2P51531 1590 aa27.38■■□□□ 1.97
RTN4-204ENST00000357732 CCDC88BA6NC98 1476 aa27.36■■□□□ 1.97
RTN4-204ENST00000357732 EEA1Q15075 1411 aa27.33■■□□□ 1.97
RTN4-204ENST00000357732 ABCC8Q09428 1581 aa27.3■■□□□ 1.96
RTN4-204ENST00000357732 TNIKQ9UKE5 1360 aa27.21■■□□□ 1.95
RTN4-204ENST00000357732 PELP1Q8IZL8 1130 aaKnown RBP27.2■■□□□ 1.94
RTN4-204ENST00000357732 CEP162Q5TB80 1403 aa27.17■■□□□ 1.94
RTN4-204ENST00000357732 PABPN1Q86U42 306 aaKnown RBP eCLIP27.15■■□□□ 1.94
RTN4-204ENST00000357732 BICRAQ9NZM4 1560 aa27.13■■□□□ 1.93
RTN4-204ENST00000357732 CCER1Q8TC90 406 aaPredicted RBP27.11■■□□□ 1.93
RTN4-204ENST00000357732 PEG3Q9GZU2 1588 aa27.1■■□□□ 1.93
RTN4-204ENST00000357732 SOGA1O94964 1423 aa27.05■■□□□ 1.92
RTN4-204ENST00000357732 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.03■■□□□ 1.92
RTN4-204ENST00000357732 CSRNP3Q8WYN3 585 aa27.01■■□□□ 1.91
RTN4-204ENST00000357732 GOLGA3Q08378 1498 aa27.01■■□□□ 1.91
RTN4-204ENST00000357732 SCAF1Q9H7N4 1312 aaKnown RBP26.99■■□□□ 1.91
RTN4-204ENST00000357732 RUSC2Q8N2Y8 1516 aa26.92■■□□□ 1.9
RTN4-204ENST00000357732 KIF21BO75037 1637 aa26.89■■□□□ 1.89
RTN4-204ENST00000357732 CEP164Q9UPV0 1460 aa26.85■■□□□ 1.89
RTN4-204ENST00000357732 UBTFP17480 764 aaKnown RBP26.79■■□□□ 1.88
RTN4-204ENST00000357732 ACIN1Q9UKV3 1341 aaKnown RBP26.78■■□□□ 1.88
RTN4-204ENST00000357732 TTBK1Q5TCY1 1321 aaPredicted RBP26.78■■□□□ 1.88
RTN4-204ENST00000357732 DIEXFQ68CQ4 756 aaKnown RBP26.77■■□□□ 1.88
RTN4-204ENST00000357732 ATAD2BQ9ULI0 1458 aa26.76■■□□□ 1.87
RTN4-204ENST00000357732 BAZ1BQ9UIG0 1483 aaKnown RBP26.75■■□□□ 1.87
RTN4-204ENST00000357732 SYNJ1O43426 1573 aa26.73■■□□□ 1.87
RTN4-204ENST00000357732 CENPBP07199 599 aaPredicted RBP26.7■■□□□ 1.86
RTN4-204ENST00000357732 CLIP1P30622 1438 aa26.62■■□□□ 1.85
RTN4-204ENST00000357732 VPS8Q8N3P4 1428 aa26.62■■□□□ 1.85
RTN4-204ENST00000357732 NEUROD1Q13562 356 aa26.58■■□□□ 1.85
RTN4-204ENST00000357732 ZNF316A6NFI3 1004 aaPredicted RBP26.57■■□□□ 1.84
RTN4-204ENST00000357732 TOP2BQ02880 1626 aa26.52■■□□□ 1.84
RTN4-204ENST00000357732 BIVM-ERCC5R4GMW8 1640 aa26.46■■□□□ 1.83
RTN4-204ENST00000357732 RAPGEF2Q9Y4G8 1499 aa26.44■■□□□ 1.82
RTN4-204ENST00000357732 ERICH3Q5RHP9 1530 aa26.44■■□□□ 1.82
RTN4-204ENST00000357732 APLP2Q06481 763 aa26.39■■□□□ 1.81
RTN4-204ENST00000357732 GTF3C3Q9Y5Q9 886 aa26.36■■□□□ 1.81
RTN4-204ENST00000357732 CLSPNQ9HAW4 1339 aa26.33■■□□□ 1.81
RTN4-204ENST00000357732 PRXQ9BXM0 1461 aa26.3■■□□□ 1.8
RTN4-204ENST00000357732 HMGXB3Q12766 1538 aa26.27■■□□□ 1.8
RTN4-204ENST00000357732 HNRNPUL2Q1KMD3 747 aaKnown RBP26.27■■□□□ 1.8
RTN4-204ENST00000357732 RANGAP1P46060 587 aaPredicted RBP26.25■■□□□ 1.79
RTN4-204ENST00000357732 NCAPD3P42695 1498 aa26.22■■□□□ 1.79
RTN4-204ENST00000357732 ARAP1Q96P48 1450 aa26.16■■□□□ 1.78
RTN4-204ENST00000357732 CUX1P39880 1505 aa26.12■■□□□ 1.77
RTN4-204ENST00000357732 KIF27Q86VH2 1401 aa26.1■■□□□ 1.77
RTN4-204ENST00000357732 RRBP1Q9P2E9 1410 aaKnown RBP26.08■■□□□ 1.77
RTN4-204ENST00000357732 MIER1Q8N108 512 aa26.07■■□□□ 1.76
RTN4-204ENST00000357732 CUX2O14529 1486 aa26.06■■□□□ 1.76
RTN4-204ENST00000357732 DHX57Q6P158 1386 aaKnown RBP26.04■■□□□ 1.76
RTN4-204ENST00000357732 CFTRP13569 1480 aa26.03■■□□□ 1.76
RTN4-204ENST00000357732 MYT1Q01538 1121 aa26■■□□□ 1.75
RTN4-204ENST00000357732 PRDM2Q13029 1718 aa25.97■■□□□ 1.75
RTN4-204ENST00000357732 MAP3K1Q13233 1512 aa25.92■■□□□ 1.74
RTN4-204ENST00000357732 YTHDC1Q96MU7 727 aaKnown RBP25.91■■□□□ 1.74
RTN4-204ENST00000357732 ARHGAP35Q9NRY4 1499 aa25.89■■□□□ 1.74
RTN4-204ENST00000357732 KANK4Q5T7N3 995 aaPredicted RBP25.88■■□□□ 1.73
RTN4-204ENST00000357732 CCNB3Q8WWL7 1395 aa25.86■■□□□ 1.73
RTN4-204ENST00000357732 TIAM1Q13009 1591 aa25.74■■□□□ 1.71
RTN4-204ENST00000357732 CADPSQ9ULU8 1353 aa25.73■■□□□ 1.71
RTN4-204ENST00000357732 IGF1RP08069 1367 aa25.72■■□□□ 1.71
RTN4-204ENST00000357732 FGD5Q6ZNL6 1462 aa25.65■■□□□ 1.7
RTN4-204ENST00000357732 FHAD1B1AJZ9 1412 aa25.63■■□□□ 1.69
RTN4-204ENST00000357732 LRRC9Q6ZRR7 1453 aa25.61■■□□□ 1.69
RTN4-204ENST00000357732 CFAP43Q8NDM7 1665 aa25.61■■□□□ 1.69
RTN4-204ENST00000357732 CARMIL1Q5VZK9 1371 aa25.6■■□□□ 1.69
RTN4-204ENST00000357732 MAPKBP1O60336 1514 aa25.59■■□□□ 1.69
RTN4-204ENST00000357732 RAB3GAP2Q9H2M9 1393 aa25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms