RNA–Protein interactions for RNA: ENST00000488127.1

LDLRAP1-207, Transcript of low density lipoprotein receptor adaptor protein 1, humanhuman

TSL 2

Gene LDLRAP1, Length 4,670 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAP1-207ENST00000488127 NISCHQ9Y2I1 1504 aa21.42■■□□□ 1.02
LDLRAP1-207ENST00000488127 DCAF8L2P0C7V8 631 aa21.4■■□□□ 1.02
LDLRAP1-207ENST00000488127 SHROOM4Q9ULL8 1493 aa20.03■□□□□ 0.8
LDLRAP1-207ENST00000488127 SUPT5HO00267 1087 aaKnown RBP19.97■□□□□ 0.79
LDLRAP1-207ENST00000488127 EHMT2Q96KQ7 1210 aa19.19■□□□□ 0.66
LDLRAP1-207ENST00000488127 FAM9AQ8IZU1 332 aaPredicted RBP18.8■□□□□ 0.6
LDLRAP1-207ENST00000488127 ABCC9O60706 1549 aa18.72■□□□□ 0.59
LDLRAP1-207ENST00000488127 RANGAP1P46060 587 aaPredicted RBP18.47■□□□□ 0.55
LDLRAP1-207ENST00000488127 PABPN1Q86U42 306 aaKnown RBP eCLIP18.46■□□□□ 0.54
LDLRAP1-207ENST00000488127 TRIM41Q8WV44 630 aa18.46■□□□□ 0.54
LDLRAP1-207ENST00000488127 TTBK1Q5TCY1 1321 aaPredicted RBP18.39■□□□□ 0.53
LDLRAP1-207ENST00000488127 APLP2Q06481 763 aa18.34■□□□□ 0.53
LDLRAP1-207ENST00000488127 PELP1Q8IZL8 1130 aaKnown RBP18.16■□□□□ 0.5
LDLRAP1-207ENST00000488127 UBTFP17480 764 aaKnown RBP18.16■□□□□ 0.5
LDLRAP1-207ENST00000488127 ATP1B4Q9UN42 357 aaPredicted RBP18.15■□□□□ 0.5
LDLRAP1-207ENST00000488127 PCGF6Q9BYE7 350 aa18.13■□□□□ 0.49
LDLRAP1-207ENST00000488127 PPARGC1BQ86YN6 1023 aaKnown RBP17.88■□□□□ 0.45
LDLRAP1-207ENST00000488127 CHIC1Q5VXU3 224 aa17.86■□□□□ 0.45
LDLRAP1-207ENST00000488127 MYT1Q01538 1121 aa17.84■□□□□ 0.45
LDLRAP1-207ENST00000488127 LOC105371045A0A1W2PR82 267 aa17.81■□□□□ 0.44
LDLRAP1-207ENST00000488127 CENPBP07199 599 aaPredicted RBP17.8■□□□□ 0.44
LDLRAP1-207ENST00000488127 ZCCHC6Q5VYS8 1495 aaKnown RBP17.71■□□□□ 0.43
LDLRAP1-207ENST00000488127 SCRIBQ14160 1630 aa17.7■□□□□ 0.42
LDLRAP1-207ENST00000488127 CCDC180Q9P1Z9 1646 aa17.67■□□□□ 0.42
LDLRAP1-207ENST00000488127 ZEB1P37275 1124 aaPredicted RBP17.67■□□□□ 0.42
LDLRAP1-207ENST00000488127 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.64■□□□□ 0.41
LDLRAP1-207ENST00000488127 HNRNPUL2Q1KMD3 747 aaKnown RBP17.64■□□□□ 0.41
LDLRAP1-207ENST00000488127 CCER1Q8TC90 406 aaPredicted RBP17.56■□□□□ 0.4
LDLRAP1-207ENST00000488127 HRCP23327 699 aa17.54■□□□□ 0.4
LDLRAP1-207ENST00000488127 ITGAEP38570 1179 aa17.51■□□□□ 0.39
LDLRAP1-207ENST00000488127 ERICH6Q7L0X2 663 aa17.48■□□□□ 0.39
LDLRAP1-207ENST00000488127 FBLN2P98095 1184 aa17.45■□□□□ 0.38
LDLRAP1-207ENST00000488127 MYT1LQ9UL68 1186 aa17.41■□□□□ 0.38
LDLRAP1-207ENST00000488127 YTHDC1Q96MU7 727 aaKnown RBP17.38■□□□□ 0.37
LDLRAP1-207ENST00000488127 RB1CC1Q8TDY2 1594 aa17.35■□□□□ 0.37
LDLRAP1-207ENST00000488127 TRIM26Q12899 539 aaPredicted RBP17.27■□□□□ 0.35
LDLRAP1-207ENST00000488127 P3H3Q8IVL6 736 aa17.21■□□□□ 0.35
LDLRAP1-207ENST00000488127 NACADO15069 1562 aa17.19■□□□□ 0.34
LDLRAP1-207ENST00000488127 ARID3CA6NKF2 412 aa17.17■□□□□ 0.34
LDLRAP1-207ENST00000488127 CSRNP3Q8WYN3 585 aa17.16■□□□□ 0.34
LDLRAP1-207ENST00000488127 NEFLP07196 543 aa17.12■□□□□ 0.33
LDLRAP1-207ENST00000488127 FAM50AQ14320 339 aaKnown RBP17.1■□□□□ 0.33
LDLRAP1-207ENST00000488127 RSF1Q96T23 1441 aaPredicted RBP17.06■□□□□ 0.32
LDLRAP1-207ENST00000488127 CECR2Q9BXF3 1484 aa16.98■□□□□ 0.31
LDLRAP1-207ENST00000488127 POLR3GLQ9BT43 218 aa16.96■□□□□ 0.31
LDLRAP1-207ENST00000488127 BAZ1BQ9UIG0 1483 aaKnown RBP16.9■□□□□ 0.3
LDLRAP1-207ENST00000488127 TRIM52Q96A61 297 aa16.89■□□□□ 0.29
LDLRAP1-207ENST00000488127 CNGB1Q14028 1251 aaPredicted RBP16.89■□□□□ 0.29
LDLRAP1-207ENST00000488127 DCAF1Q9Y4B6 1507 aa16.88■□□□□ 0.29
LDLRAP1-207ENST00000488127 ZNF777Q9ULD5 760 aaPredicted RBP16.82■□□□□ 0.28
LDLRAP1-207ENST00000488127 CHMP7Q8WUX9 453 aaPredicted RBP16.79■□□□□ 0.28
LDLRAP1-207ENST00000488127 GTF3C3Q9Y5Q9 886 aa16.79■□□□□ 0.28
LDLRAP1-207ENST00000488127 DIEXFQ68CQ4 756 aaKnown RBP16.78■□□□□ 0.28
LDLRAP1-207ENST00000488127 NEUROD1Q13562 356 aa16.77■□□□□ 0.28
LDLRAP1-207ENST00000488127 BAZ1AQ9NRL2 1556 aaPredicted RBP16.76■□□□□ 0.27
LDLRAP1-207ENST00000488127 CDK11AQ9UQ88 783 aaPredicted RBP16.69■□□□□ 0.26
LDLRAP1-207ENST00000488127 MROH2BQ7Z745 1585 aa16.68■□□□□ 0.26
LDLRAP1-207ENST00000488127 WRNQ14191 1432 aaPredicted RBP eCLIP16.68■□□□□ 0.26
LDLRAP1-207ENST00000488127 ZNF326Q5BKZ1 582 aaKnown RBP16.67■□□□□ 0.26
LDLRAP1-207ENST00000488127 SLC4A1APQ9BWU0 796 aaKnown RBP16.66■□□□□ 0.26
LDLRAP1-207ENST00000488127 NPM1P06748 294 aaKnown RBP eCLIP16.65■□□□□ 0.26
LDLRAP1-207ENST00000488127 ERCC6Q03468 1493 aa16.64■□□□□ 0.25
LDLRAP1-207ENST00000488127 ACIN1Q9UKV3 1341 aaKnown RBP16.56■□□□□ 0.24
LDLRAP1-207ENST00000488127 CHIC2Q9UKJ5 165 aa16.53■□□□□ 0.24
LDLRAP1-207ENST00000488127 PLPPR3Q6T4P5 718 aa16.53■□□□□ 0.24
LDLRAP1-207ENST00000488127 DAXXQ9UER7 740 aaPredicted RBP16.5■□□□□ 0.23
LDLRAP1-207ENST00000488127 MYO15BQ96JP2 1530 aa16.5■□□□□ 0.23
LDLRAP1-207ENST00000488127 CLIP1P30622 1438 aa16.5■□□□□ 0.23
LDLRAP1-207ENST00000488127 KCNH8Q96L42 1107 aa16.5■□□□□ 0.23
LDLRAP1-207ENST00000488127 CCDC88BA6NC98 1476 aa16.5■□□□□ 0.23
LDLRAP1-207ENST00000488127 KIF27Q86VH2 1401 aa16.48■□□□□ 0.23
LDLRAP1-207ENST00000488127 RTL5Q5HYW3 569 aaPredicted RBP16.48■□□□□ 0.23
LDLRAP1-207ENST00000488127 BCANQ96GW7 911 aa16.45■□□□□ 0.22
LDLRAP1-207ENST00000488127 MTUS2Q5JR59 1369 aa16.45■□□□□ 0.22
LDLRAP1-207ENST00000488127 SMARCA2P51531 1590 aa16.42■□□□□ 0.22
LDLRAP1-207ENST00000488127 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.22
LDLRAP1-207ENST00000488127 WIZO95785 1651 aa16.4■□□□□ 0.22
LDLRAP1-207ENST00000488127 ESF1Q9H501 851 aaKnown RBP16.4■□□□□ 0.22
LDLRAP1-207ENST00000488127 SOGA1O94964 1423 aa16.39■□□□□ 0.21
LDLRAP1-207ENST00000488127 CHGAP10645 457 aaKnown RBP16.39■□□□□ 0.21
LDLRAP1-207ENST00000488127 EEA1Q15075 1411 aa16.38■□□□□ 0.21
LDLRAP1-207ENST00000488127 CUX2O14529 1486 aa16.38■□□□□ 0.21
LDLRAP1-207ENST00000488127 GOLGA3Q08378 1498 aa16.38■□□□□ 0.21
LDLRAP1-207ENST00000488127 CEP162Q5TB80 1403 aa16.36■□□□□ 0.21
LDLRAP1-207ENST00000488127 ATAD2BQ9ULI0 1458 aa16.36■□□□□ 0.21
LDLRAP1-207ENST00000488127 TDRD9Q8NDG6 1382 aaKnown RBP16.36■□□□□ 0.21
LDLRAP1-207ENST00000488127 ABCC8Q09428 1581 aa16.35■□□□□ 0.21
LDLRAP1-207ENST00000488127 TSPY4P0CV99 314 aa16.35■□□□□ 0.21
LDLRAP1-207ENST00000488127 TSPY10P0CW01 314 aa16.35■□□□□ 0.21
LDLRAP1-207ENST00000488127 PLEKHD1A6NEE1 506 aa16.34■□□□□ 0.21
LDLRAP1-207ENST00000488127 PDS5BQ9NTI5 1447 aa16.33■□□□□ 0.21
LDLRAP1-207ENST00000488127 CARMIL1Q5VZK9 1371 aa16.31■□□□□ 0.2
LDLRAP1-207ENST00000488127 SCAF1Q9H7N4 1312 aaKnown RBP16.31■□□□□ 0.2
LDLRAP1-207ENST00000488127 CADPSQ9ULU8 1353 aa16.31■□□□□ 0.2
LDLRAP1-207ENST00000488127 RRP7BPQ9NSQ0 103 aa16.29■□□□□ 0.2
LDLRAP1-207ENST00000488127 STAG3Q9UJ98 1225 aa16.28■□□□□ 0.2
LDLRAP1-207ENST00000488127 ZNF316A6NFI3 1004 aaPredicted RBP16.28■□□□□ 0.2
LDLRAP1-207ENST00000488127 CEP164Q9UPV0 1460 aa16.28■□□□□ 0.2
LDLRAP1-207ENST00000488127 TNIKQ9UKE5 1360 aa16.25■□□□□ 0.19
LDLRAP1-207ENST00000488127 TOP2AP11388 1531 aaKnown RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms