Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 MINOS1-NBL1-202ENST00000602384 999 ntTSL 522.13■■□□□ 1.132e-11■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-NBL1-203ENST00000602450 590 ntTSL 221.35■■□□□ 1.012e-11■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-203ENST00000467029 583 ntTSL 217.9■□□□□ 0.462e-11■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-209ENST00000498642 669 ntTSL 217.6■□□□□ 0.412e-11■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-NBL1-201ENST00000602293 820 ntTSL 317.58■□□□□ 0.42e-11■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-205ENST00000481464 657 ntTSL 316.86■□□□□ 0.292e-11■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-207ENST00000486890 677 ntTSL 315.44■□□□□ 0.062e-11■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-210ENST00000617872 3678 ntTSL 2 BASIC12.37□□□□□ -0.432e-11■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-201ENST00000322753 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.452e-11■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-206ENST00000485362 438 ntTSL 27.16□□□□□ -1.262e-11■□□□□ 9.8
DDX55Q8NHQ9 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC21.42■■□□□ 1.021e-6■□□□□ 9.8
DDX55Q8NHQ9 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.54■□□□□ 0.561e-6■□□□□ 9.8
DDX55Q8NHQ9 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC23.49■■□□□ 1.358e-7■□□□□ 9.8
DDX55Q8NHQ9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.65■□□□□ 0.588e-7■□□□□ 9.8
DDX55Q8NHQ9 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.65■□□□□ 0.588e-7■□□□□ 9.8
DDX55Q8NHQ9 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.128e-7■□□□□ 9.8
DDX55Q8NHQ9 RNF220-214ENST00000484745 1951 ntTSL 519.24■□□□□ 0.677e-8■□□□□ 9.8
DDX55Q8NHQ9 RNF220-213ENST00000480686 3835 ntTSL 213.84□□□□□ -0.197e-8■□□□□ 9.8
DDX55Q8NHQ9 RNF220-211ENST00000474956 3303 ntTSL 213.37□□□□□ -0.277e-8■□□□□ 9.8
DDX55Q8NHQ9 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.562e-6■□□□□ 9.8
DDX55Q8NHQ9 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC23.72■■□□□ 1.392e-9■□□□□ 9.8
DDX55Q8NHQ9 NDUFA13-205ENST00000511180 593 ntTSL 219.4■□□□□ 0.72e-9■□□□□ 9.8
DDX55Q8NHQ9 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.661e-7■□□□□ 9.8
DDX55Q8NHQ9 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.521e-7■□□□□ 9.8
DDX55Q8NHQ9 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.491e-7■□□□□ 9.8
DDX55Q8NHQ9 IFITM3-203ENST00000531688 500 ntTSL 313.19□□□□□ -0.31e-7■□□□□ 9.8
DDX55Q8NHQ9 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.45■□□□□ 0.224e-21■□□□□ 9.8
DDX55Q8NHQ9 FABP1-204ENST00000495375 2084 ntTSL 315.12■□□□□ 0.014e-21■□□□□ 9.8
DDX55Q8NHQ9 FABP1-201ENST00000295834 555 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.774e-21■□□□□ 9.8
DDX55Q8NHQ9 ASGR2-201ENST00000254850 1396 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.055e-7■□□□□ 9.8
DDX55Q8NHQ9 ASGR2-202ENST00000355035 1386 ntTSL 1 (best) BASIC15.36■□□□□ 0.055e-7■□□□□ 9.8
DDX55Q8NHQ9 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.543e-10■□□□□ 9.8
DDX55Q8NHQ9 RPL13A-214ENST00000624069 1122 ntTSL 1 (best)18.44■□□□□ 0.543e-10■□□□□ 9.8
DDX55Q8NHQ9 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC16.89■□□□□ 0.293e-10■□□□□ 9.8
DDX55Q8NHQ9 RPL13A-212ENST00000488946 2312 ntTSL 215.48■□□□□ 0.073e-10■□□□□ 9.8
DDX55Q8NHQ9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.763e-7■□□□□ 9.8
DDX55Q8NHQ9 ITGB5-202ENST00000460797 2228 ntTSL 212.92□□□□□ -0.343e-7■□□□□ 9.8
DDX55Q8NHQ9 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.985e-31■□□□□ 9.8
DDX55Q8NHQ9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.645e-31■□□□□ 9.8
DDX55Q8NHQ9 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.619e-17■□□□□ 9.8
DDX55Q8NHQ9 TM4SF5-202ENST00000576530 932 ntTSL 1 (best)22.76■■□□□ 1.239e-17■□□□□ 9.8
DDX55Q8NHQ9 ATP5B-203ENST00000547808 705 ntTSL 523.61■■□□□ 1.376e-13■□□□□ 9.8
DDX55Q8NHQ9 ATP5B-210ENST00000552959 1085 ntTSL 323.61■■□□□ 1.376e-13■□□□□ 9.8
DDX55Q8NHQ9 ATP5B-207ENST00000551020 856 ntTSL 323.05■■□□□ 1.286e-13■□□□□ 9.8
DDX55Q8NHQ9 ATP5B-211ENST00000553007 814 ntTSL 523.05■■□□□ 1.286e-13■□□□□ 9.8
DDX55Q8NHQ9 ATP5B-205ENST00000548647 682 ntTSL 519.62■□□□□ 0.736e-13■□□□□ 9.8
DDX55Q8NHQ9 TRIM28-205ENST00000595028 486 ntTSL 218.5■□□□□ 0.559e-7■□□□□ 9.8
DDX55Q8NHQ9 ATP5B-202ENST00000547250 840 ntTSL 511.13□□□□□ -0.636e-13■□□□□ 9.8
DDX55Q8NHQ9 ATP5B-209ENST00000551570 399 ntTSL 39.65□□□□□ -0.866e-13■□□□□ 9.8
DDX55Q8NHQ9 PIEZO1-205ENST00000472168 663 ntTSL 219.39■□□□□ 0.695e-10■□□□□ 9.8
DDX55Q8NHQ9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.315e-6■□□□□ 9.8
DDX55Q8NHQ9 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.13■□□□□ 0.815e-6■□□□□ 9.8
DDX55Q8NHQ9 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.485e-6■□□□□ 9.8
DDX55Q8NHQ9 MMP17-205ENST00000535271 633 ntTSL 216.68■□□□□ 0.265e-6■□□□□ 9.8
DDX55Q8NHQ9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC23.3■■□□□ 1.321e-8■□□□□ 9.8
DDX55Q8NHQ9 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.23■□□□□ 0.831e-8■□□□□ 9.8
DDX55Q8NHQ9 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.82■□□□□ 0.761e-8■□□□□ 9.8
DDX55Q8NHQ9 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.751e-8■□□□□ 9.8
DDX55Q8NHQ9 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.241e-8■□□□□ 9.8
DDX55Q8NHQ9 SEPT8-210ENST00000448933 4270 ntTSL 1 (best) BASIC12.72□□□□□ -0.371e-8■□□□□ 9.8
DDX55Q8NHQ9 ACSS2-210ENST00000476922 1527 ntTSL 222.74■■□□□ 1.235e-7■□□□□ 9.8
DDX55Q8NHQ9 ACSS2-211ENST00000477932 2450 ntTSL 520.69■□□□□ 0.95e-7■□□□□ 9.8
DDX55Q8NHQ9 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.24■□□□□ 0.832e-12■□□□□ 9.8
DDX55Q8NHQ9 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC20■□□□□ 0.792e-12■□□□□ 9.8
DDX55Q8NHQ9 LGMN-210ENST00000555169 543 ntTSL 219.84■□□□□ 0.772e-12■□□□□ 9.8
DDX55Q8NHQ9 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.752e-12■□□□□ 9.8
DDX55Q8NHQ9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.5■□□□□ 0.715e-7■□□□□ 9.8
DDX55Q8NHQ9 LGMN-217ENST00000557609 1832 ntTSL 519.07■□□□□ 0.642e-12■□□□□ 9.8
DDX55Q8NHQ9 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.552e-12■□□□□ 9.8
DDX55Q8NHQ9 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.245e-7■□□□□ 9.8
DDX55Q8NHQ9 ACSS2-214ENST00000481284 2851 ntTSL 210.77□□□□□ -0.695e-7■□□□□ 9.8
DDX55Q8NHQ9 RPS13-203ENST00000525828 664 ntTSL 221.39■■□□□ 1.011e-7■□□□□ 9.8
DDX55Q8NHQ9 RPS13-204ENST00000526895 561 ntTSL 317.86■□□□□ 0.451e-7■□□□□ 9.8
DDX55Q8NHQ9 RPS13-209ENST00000533969 355 ntTSL 316.9■□□□□ 0.31e-7■□□□□ 9.8
DDX55Q8NHQ9 RPS13-201ENST00000228140 491 ntTSL 2 BASIC12.95□□□□□ -0.341e-7■□□□□ 9.8
DDX55Q8NHQ9 RPS13-202ENST00000525634 646 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.541e-7■□□□□ 9.8
DDX55Q8NHQ9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC24.84■■□□□ 1.573e-10■□□□□ 9.8
DDX55Q8NHQ9 YIF1B-205ENST00000585563 1118 ntTSL 321.72■■□□□ 1.073e-10■□□□□ 9.8
DDX55Q8NHQ9 YIF1B-212ENST00000589644 1917 ntTSL 221.59■■□□□ 1.053e-10■□□□□ 9.8
DDX55Q8NHQ9 YIF1B-209ENST00000588002 575 ntTSL 518.14■□□□□ 0.493e-10■□□□□ 9.8
DDX55Q8NHQ9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.552e-7■□□□□ 9.8
DDX55Q8NHQ9 DRAP1-204ENST00000525501 695 ntTSL 533.94■■■■□ 3.022e-6■□□□□ 9.8
DDX55Q8NHQ9 MCRIP2-202ENST00000474840 702 ntTSL 1 (best)32.52■■■□□ 2.82e-6■□□□□ 9.8
DDX55Q8NHQ9 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.142e-6■□□□□ 9.8
DDX55Q8NHQ9 HMG20B-214ENST00000493191 852 ntTSL 328.28■■■□□ 2.122e-6■□□□□ 9.8
DDX55Q8NHQ9 HMG20B-207ENST00000461099 687 ntTSL 227.62■■■□□ 2.012e-6■□□□□ 9.8
DDX55Q8NHQ9 GUK1-220ENST00000471270 657 ntTSL 227.39■■□□□ 1.983e-12■□□□□ 9.8
DDX55Q8NHQ9 MCRIP2-203ENST00000491999 1050 ntTSL 527.3■■□□□ 1.962e-6■□□□□ 9.8
DDX55Q8NHQ9 FASTK-213ENST00000482806 1826 ntTSL 526.06■■□□□ 1.765e-7■□□□□ 9.8
DDX55Q8NHQ9 DRAP1-207ENST00000531121 672 ntTSL 325.64■■□□□ 1.72e-6■□□□□ 9.8
DDX55Q8NHQ9 FASTK-215ENST00000489884 1751 ntTSL 1 (best)25.49■■□□□ 1.675e-7■□□□□ 9.8
DDX55Q8NHQ9 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC25.09■■□□□ 1.615e-7■□□□□ 9.8
DDX55Q8NHQ9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC24.93■■□□□ 1.585e-7■□□□□ 9.8
DDX55Q8NHQ9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC24.49■■□□□ 1.512e-6■□□□□ 9.8
DDX55Q8NHQ9 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC24.38■■□□□ 1.492e-34■□□□□ 9.8
DDX55Q8NHQ9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.31■■□□□ 1.482e-6■□□□□ 9.8
DDX55Q8NHQ9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC23.81■■□□□ 1.42e-6■□□□□ 9.8
DDX55Q8NHQ9 DRAP1-209ENST00000534333 453 ntTSL 223.45■■□□□ 1.342e-6■□□□□ 9.8
DDX55Q8NHQ9 FASTK-214ENST00000483953 1178 ntTSL 523.39■■□□□ 1.335e-7■□□□□ 9.8
DDX55Q8NHQ9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.295e-7■□□□□ 9.8
Retrieved 100 of 15,504 protein–RNA pairs in 119.3 ms