RNA–Protein interactions for RNA: ENST00000474956.1

RNF220-211, Transcript of ring finger protein 220, humanhuman

TSL 2

Gene RNF220, Length 3,303 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220-211ENST00000474956 NISCHQ9Y2I1 1504 aa26.5■■□□□ 1.83
RNF220-211ENST00000474956 SHROOM4Q9ULL8 1493 aa22.66■■□□□ 1.22
RNF220-211ENST00000474956 CCDC180Q9P1Z9 1646 aa22.56■■□□□ 1.2
RNF220-211ENST00000474956 ZCCHC6Q5VYS8 1495 aaKnown RBP22.35■■□□□ 1.17
RNF220-211ENST00000474956 DCAF8L2P0C7V8 631 aa22.3■■□□□ 1.16
RNF220-211ENST00000474956 SUPT5HO00267 1087 aaKnown RBP22.01■■□□□ 1.11
RNF220-211ENST00000474956 DCAF1Q9Y4B6 1507 aa21.59■■□□□ 1.05
RNF220-211ENST00000474956 ABCC9O60706 1549 aa21.42■■□□□ 1.02
RNF220-211ENST00000474956 SCRIBQ14160 1630 aa21.33■■□□□ 1
RNF220-211ENST00000474956 CHIC1Q5VXU3 224 aa21.15■□□□□ 0.98
RNF220-211ENST00000474956 MYO15BQ96JP2 1530 aa21.11■□□□□ 0.97
RNF220-211ENST00000474956 NACADO15069 1562 aa20.93■□□□□ 0.94
RNF220-211ENST00000474956 RSF1Q96T23 1441 aaPredicted RBP20.91■□□□□ 0.94
RNF220-211ENST00000474956 CECR2Q9BXF3 1484 aa20.84■□□□□ 0.93
RNF220-211ENST00000474956 RB1CC1Q8TDY2 1594 aa20.72■□□□□ 0.91
RNF220-211ENST00000474956 MROH2BQ7Z745 1585 aa20.69■□□□□ 0.9
RNF220-211ENST00000474956 LOC105371045A0A1W2PR82 267 aa20.66■□□□□ 0.9
RNF220-211ENST00000474956 WIZO95785 1651 aa20.58■□□□□ 0.89
RNF220-211ENST00000474956 UNC13AQ9UPW8 1703 aa20.54■□□□□ 0.88
RNF220-211ENST00000474956 PABPN1Q86U42 306 aaKnown RBP eCLIP20.5■□□□□ 0.87
RNF220-211ENST00000474956 FAM9AQ8IZU1 332 aaPredicted RBP20.41■□□□□ 0.86
RNF220-211ENST00000474956 TRIM41Q8WV44 630 aa20.4■□□□□ 0.86
RNF220-211ENST00000474956 EHMT2Q96KQ7 1210 aa20.38■□□□□ 0.85
RNF220-211ENST00000474956 HRCP23327 699 aa20.35■□□□□ 0.85
RNF220-211ENST00000474956 BAZ1AQ9NRL2 1556 aaPredicted RBP20.33■□□□□ 0.84
RNF220-211ENST00000474956 BICRAQ9NZM4 1560 aa20.27■□□□□ 0.84
RNF220-211ENST00000474956 PCGF6Q9BYE7 350 aa20.26■□□□□ 0.83
RNF220-211ENST00000474956 SMARCA4P51532 1647 aa20.26■□□□□ 0.83
RNF220-211ENST00000474956 TOP2AP11388 1531 aaKnown RBP20.12■□□□□ 0.81
RNF220-211ENST00000474956 CCDC88BA6NC98 1476 aa20.11■□□□□ 0.81
RNF220-211ENST00000474956 EIF4G1Q04637 1599 aaKnown RBP20.09■□□□□ 0.81
RNF220-211ENST00000474956 SMARCA2P51531 1590 aa20.06■□□□□ 0.8
RNF220-211ENST00000474956 ABCC8Q09428 1581 aa20.06■□□□□ 0.8
RNF220-211ENST00000474956 PPARGC1BQ86YN6 1023 aaKnown RBP19.85■□□□□ 0.77
RNF220-211ENST00000474956 ATAD2BQ9ULI0 1458 aa19.82■□□□□ 0.76
RNF220-211ENST00000474956 SOGA1O94964 1423 aa19.79■□□□□ 0.76
RNF220-211ENST00000474956 PEG3Q9GZU2 1588 aa19.79■□□□□ 0.76
RNF220-211ENST00000474956 TRIM26Q12899 539 aaPredicted RBP19.77■□□□□ 0.76
RNF220-211ENST00000474956 RUSC2Q8N2Y8 1516 aa19.76■□□□□ 0.75
RNF220-211ENST00000474956 BAZ1BQ9UIG0 1483 aaKnown RBP19.75■□□□□ 0.75
RNF220-211ENST00000474956 WRNQ14191 1432 aaPredicted RBP eCLIP19.62■□□□□ 0.73
RNF220-211ENST00000474956 SYNJ1O43426 1573 aa19.61■□□□□ 0.73
RNF220-211ENST00000474956 TTBK1Q5TCY1 1321 aaPredicted RBP19.61■□□□□ 0.73
RNF220-211ENST00000474956 CSRNP3Q8WYN3 585 aa19.54■□□□□ 0.72
RNF220-211ENST00000474956 UBTFP17480 764 aaKnown RBP19.5■□□□□ 0.71
RNF220-211ENST00000474956 CEP162Q5TB80 1403 aa19.47■□□□□ 0.71
RNF220-211ENST00000474956 ZEB1P37275 1124 aaPredicted RBP19.45■□□□□ 0.7
RNF220-211ENST00000474956 NCAPD3P42695 1498 aa19.42■□□□□ 0.7
RNF220-211ENST00000474956 RANGAP1P46060 587 aaPredicted RBP19.41■□□□□ 0.7
RNF220-211ENST00000474956 TNIKQ9UKE5 1360 aa19.37■□□□□ 0.69
RNF220-211ENST00000474956 HMGXB3Q12766 1538 aa19.36■□□□□ 0.69
RNF220-211ENST00000474956 EEA1Q15075 1411 aa19.34■□□□□ 0.69
RNF220-211ENST00000474956 GOLGA3Q08378 1498 aa19.32■□□□□ 0.68
RNF220-211ENST00000474956 RAPGEF2Q9Y4G8 1499 aa19.29■□□□□ 0.68
RNF220-211ENST00000474956 TOP2BQ02880 1626 aa19.29■□□□□ 0.68
RNF220-211ENST00000474956 CUX1P39880 1505 aa19.26■□□□□ 0.67
RNF220-211ENST00000474956 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.25■□□□□ 0.67
RNF220-211ENST00000474956 CEP164Q9UPV0 1460 aa19.23■□□□□ 0.67
RNF220-211ENST00000474956 CFTRP13569 1480 aa19.22■□□□□ 0.67
RNF220-211ENST00000474956 CC2D2AQ9P2K1 1620 aa19.21■□□□□ 0.67
RNF220-211ENST00000474956 BIVM-ERCC5R4GMW8 1640 aa19.21■□□□□ 0.67
RNF220-211ENST00000474956 KIF21BO75037 1637 aa19.2■□□□□ 0.66
RNF220-211ENST00000474956 CLIP1P30622 1438 aa19.15■□□□□ 0.66
RNF220-211ENST00000474956 DNAJC5BQ9UF47 199 aa19.1■□□□□ 0.65
RNF220-211ENST00000474956 CADPSQ9ULU8 1353 aa19.07■□□□□ 0.64
RNF220-211ENST00000474956 CCER1Q8TC90 406 aaPredicted RBP19.06■□□□□ 0.64
RNF220-211ENST00000474956 NESP48681 1621 aa19.03■□□□□ 0.64
RNF220-211ENST00000474956 PRXQ9BXM0 1461 aa19.03■□□□□ 0.64
RNF220-211ENST00000474956 PELP1Q8IZL8 1130 aaKnown RBP19.02■□□□□ 0.64
RNF220-211ENST00000474956 KIF27Q86VH2 1401 aa18.99■□□□□ 0.63
RNF220-211ENST00000474956 VPS8Q8N3P4 1428 aa18.99■□□□□ 0.63
RNF220-211ENST00000474956 PRDM2Q13029 1718 aa18.99■□□□□ 0.63
RNF220-211ENST00000474956 CUX2O14529 1486 aa18.97■□□□□ 0.63
RNF220-211ENST00000474956 HNRNPUL2Q1KMD3 747 aaKnown RBP18.97■□□□□ 0.63
RNF220-211ENST00000474956 FGD5Q6ZNL6 1462 aa18.95■□□□□ 0.62
RNF220-211ENST00000474956 FANCD2Q9BXW9 1451 aa18.92■□□□□ 0.62
RNF220-211ENST00000474956 ARAP1Q96P48 1450 aa18.92■□□□□ 0.62
RNF220-211ENST00000474956 ERICH3Q5RHP9 1530 aa18.91■□□□□ 0.62
RNF220-211ENST00000474956 SCAF1Q9H7N4 1312 aaKnown RBP18.91■□□□□ 0.62
RNF220-211ENST00000474956 IGF1RP08069 1367 aa18.89■□□□□ 0.61
RNF220-211ENST00000474956 RAD54L2Q9Y4B4 1467 aa18.88■□□□□ 0.61
RNF220-211ENST00000474956 KANK4Q5T7N3 995 aaPredicted RBP18.87■□□□□ 0.61
RNF220-211ENST00000474956 APLP2Q06481 763 aa18.87■□□□□ 0.61
RNF220-211ENST00000474956 ARHGAP35Q9NRY4 1499 aa18.8■□□□□ 0.6
RNF220-211ENST00000474956 CARMIL1Q5VZK9 1371 aa18.78■□□□□ 0.6
RNF220-211ENST00000474956 P3H3Q8IVL6 736 aa18.77■□□□□ 0.6
RNF220-211ENST00000474956 TOPBP1Q92547 1522 aa18.77■□□□□ 0.59
RNF220-211ENST00000474956 POLA1P09884 1462 aaPredicted RBP18.76■□□□□ 0.59
RNF220-211ENST00000474956 DNMBPQ6XZF7 1577 aa18.72■□□□□ 0.59
RNF220-211ENST00000474956 URB2Q14146 1524 aaKnown RBP18.71■□□□□ 0.59
RNF220-211ENST00000474956 TDRD9Q8NDG6 1382 aaKnown RBP18.67■□□□□ 0.58
RNF220-211ENST00000474956 ACIN1Q9UKV3 1341 aaKnown RBP18.67■□□□□ 0.58
RNF220-211ENST00000474956 ABCA10Q8WWZ4 1543 aa18.64■□□□□ 0.57
RNF220-211ENST00000474956 ITGAEP38570 1179 aa18.63■□□□□ 0.57
RNF220-211ENST00000474956 ATP1B4Q9UN42 357 aaPredicted RBP18.63■□□□□ 0.57
RNF220-211ENST00000474956 KIF21AQ7Z4S6 1674 aa18.62■□□□□ 0.57
RNF220-211ENST00000474956 LAMC3Q9Y6N6 1575 aa18.62■□□□□ 0.57
RNF220-211ENST00000474956 DIEXFQ68CQ4 756 aaKnown RBP18.6■□□□□ 0.57
RNF220-211ENST00000474956 FHOD3Q2V2M9 1422 aa18.58■□□□□ 0.56
RNF220-211ENST00000474956 NEUROD1Q13562 356 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms