Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 ERBB2-201ENST00000269571 4545 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.244e-6■□□□□ 10.9
NIP7Q9Y221 RPLP0-212ENST00000548551 543 ntTSL 213.35□□□□□ -0.274e-6■□□□□ 10.9
NIP7Q9Y221 RPLP0-221ENST00000551258 966 ntTSL 513.32□□□□□ -0.284e-6■□□□□ 10.9
NIP7Q9Y221 RPLP0-224ENST00000551914 402 ntTSL 313.16□□□□□ -0.34e-6■□□□□ 10.9
NIP7Q9Y221 RPLP0-213ENST00000548568 1127 ntTSL 1 (best)12.93□□□□□ -0.344e-6■□□□□ 10.9
NIP7Q9Y221 RPLP0-208ENST00000547191 680 ntTSL 512.93□□□□□ -0.344e-6■□□□□ 10.9
NIP7Q9Y221 RPLP0-210ENST00000547475 792 ntTSL 312.82□□□□□ -0.364e-6■□□□□ 10.9
NIP7Q9Y221 CYB5R3-202ENST00000361740 2938 ntTSL 2 BASIC12.41□□□□□ -0.424e-6■□□□□ 10.9
NIP7Q9Y221 RPLP0-211ENST00000548495 651 ntTSL 312.23□□□□□ -0.454e-6■□□□□ 10.9
NIP7Q9Y221 ERBB2-204ENST00000541774 4341 ntTSL 5 BASIC11.95□□□□□ -0.54e-6■□□□□ 10.9
NIP7Q9Y221 RPLP0-207ENST00000547173 864 ntTSL 310.96□□□□□ -0.654e-6■□□□□ 10.9
NIP7Q9Y221 AL512328.1-201ENST00000412344 536 ntTSL 3 BASIC14.09□□□□□ -0.159e-11■□□□□ 10.8
NIP7Q9Y221 POR-224ENST00000496888 939 ntTSL 221.86■■□□□ 1.093e-7■□□□□ 10.8
NIP7Q9Y221 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.753e-7■□□□□ 10.8
NIP7Q9Y221 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.48■□□□□ 0.713e-7■□□□□ 10.8
NIP7Q9Y221 POR-221ENST00000487247 853 ntTSL 219.08■□□□□ 0.643e-7■□□□□ 10.8
NIP7Q9Y221 POR-223ENST00000495770 559 ntTSL 219.05■□□□□ 0.643e-7■□□□□ 10.8
NIP7Q9Y221 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.57■□□□□ 0.563e-7■□□□□ 10.8
NIP7Q9Y221 POR-217ENST00000460892 603 ntTSL 217.39■□□□□ 0.373e-7■□□□□ 10.8
NIP7Q9Y221 A2M-210ENST00000542567 563 ntTSL 49.08□□□□□ -0.964e-18■□□□□ 10.8
NIP7Q9Y221 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.651e-9■□□□□ 10.7
NIP7Q9Y221 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.631e-9■□□□□ 10.7
NIP7Q9Y221 FN1-220ENST00000480024 576 ntTSL 28.83□□□□□ -14e-46■□□□□ 10.6
NIP7Q9Y221 RPL4-207ENST00000564647 1110 ntTSL 26.89□□□□□ -1.311e-323■□□□□ 10.6
NIP7Q9Y221 snoU18.1-201ENST00000629629 71 ntBASIC1.06□□□□□ -2.241e-323■□□□□ 10.6
NIP7Q9Y221 SNORD18B-201ENST00000365659 72 ntBASIC0.44□□□□□ -2.341e-323■□□□□ 10.6
NIP7Q9Y221 TF-211ENST00000485977 580 ntTSL 324.18■■□□□ 1.463e-17■□□□□ 10.6
NIP7Q9Y221 TF-201ENST00000402696 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.13e-17■□□□□ 10.6
NIP7Q9Y221 SNORD116-25-201ENST00000516517 92 ntBASIC0.7□□□□□ -2.35e-21■□□□□ 10.6
NIP7Q9Y221 SNORD116-15-201ENST00000384445 92 ntBASIC-0.1□□□□□ -2.432e-12■□□□□ 10.5
NIP7Q9Y221 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.241e-20■□□□□ 10.5
NIP7Q9Y221 ATP1A1-201ENST00000295598 3654 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.024e-8■□□□□ 10.4
NIP7Q9Y221 ATP1A1-211ENST00000537345 3763 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.314e-8■□□□□ 10.4
NIP7Q9Y221 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.39□□□□□ -1.234e-8■□□□□ 10.4
NIP7Q9Y221 RPL13A-205ENST00000474171 521 ntTSL 214.78□□□□□ -0.041e-74■□□□□ 10.4
NIP7Q9Y221 RPL13A-207ENST00000476300 619 ntTSL 312.63□□□□□ -0.391e-74■□□□□ 10.4
NIP7Q9Y221 RPL13A-203ENST00000468655 407 ntTSL 212.16□□□□□ -0.461e-74■□□□□ 10.4
NIP7Q9Y221 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.711e-6■□□□□ 10.4
NIP7Q9Y221 SERPINF1-203ENST00000570820 820 ntTSL 217.15■□□□□ 0.347e-10■□□□□ 10.4
NIP7Q9Y221 SERPINF1-207ENST00000572048 573 ntTSL 212.74□□□□□ -0.377e-10■□□□□ 10.4
NIP7Q9Y221 SERPINF1-209ENST00000573763 729 ntTSL 310.51□□□□□ -0.737e-10■□□□□ 10.4
NIP7Q9Y221 GPC3-203ENST00000406757 836 ntTSL 210.51□□□□□ -0.733e-13■□□□□ 10.4
NIP7Q9Y221 C3-206ENST00000596179 280 ntTSL 31.95□□□□□ -2.11e-24■□□□□ 10.3
NIP7Q9Y221 TF-202ENST00000414694 546 ntTSL 424.18■■□□□ 1.468e-63■□□□□ 10.3
NIP7Q9Y221 TF-203ENST00000460531 577 ntTSL 424.18■■□□□ 1.468e-63■□□□□ 10.3
NIP7Q9Y221 TF-212ENST00000493011 999 ntTSL 224.18■■□□□ 1.468e-63■□□□□ 10.3
NIP7Q9Y221 TF-213ENST00000494430 594 ntTSL 424.18■■□□□ 1.468e-63■□□□□ 10.3
NIP7Q9Y221 TF-208ENST00000474287 645 ntTSL 223.02■■□□□ 1.288e-63■□□□□ 10.3
NIP7Q9Y221 TF-206ENST00000466911 526 ntTSL 420.84■□□□□ 0.938e-63■□□□□ 10.3
NIP7Q9Y221 TF-209ENST00000475382 586 ntTSL 411.63□□□□□ -0.558e-63■□□□□ 10.3
NIP7Q9Y221 TF-214ENST00000498622 719 ntTSL 210.92□□□□□ -0.668e-63■□□□□ 10.3
NIP7Q9Y221 TFP1-201ENST00000460564 572 ntTSL 4 BASIC9.35□□□□□ -0.918e-63■□□□□ 10.3
NIP7Q9Y221 SNORD4A-201ENST00000459174 72 ntBASIC-0.26□□□□□ -2.458e-40■□□□□ 10.2
NIP7Q9Y221 FN1-226ENST00000496542 695 ntTSL 217.08■□□□□ 0.322e-32■□□□□ 10.2
NIP7Q9Y221 C3-208ENST00000596548 576 ntTSL 33.43□□□□□ -1.868e-23■□□□□ 10.2
NIP7Q9Y221 FN1-217ENST00000471193 496 ntTSL 314.64□□□□□ -0.074e-53■□□□□ 10.2
NIP7Q9Y221 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.31■■□□□ 13e-23■□□□□ 10.2
NIP7Q9Y221 RPS3A-209ENST00000510993 762 ntTSL 517.05■□□□□ 0.323e-23■□□□□ 10.2
NIP7Q9Y221 RPS3A-206ENST00000507485 1526 ntTSL 1 (best)11.99□□□□□ -0.493e-23■□□□□ 10.2
NIP7Q9Y221 RPS3A-201ENST00000274065 934 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.63e-23■□□□□ 10.2
NIP7Q9Y221 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC7.18□□□□□ -1.263e-23■□□□□ 10.2
NIP7Q9Y221 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.14□□□□□ -1.593e-23■□□□□ 10.2
NIP7Q9Y221 RPS3A-211ENST00000512797 686 ntTSL 24.14□□□□□ -1.753e-23■□□□□ 10.2
NIP7Q9Y221 RPS3A-214ENST00000515818 572 ntTSL 53.58□□□□□ -1.843e-23■□□□□ 10.2
NIP7Q9Y221 RPS3A-205ENST00000507327 674 ntTSL 23.47□□□□□ -1.853e-23■□□□□ 10.2
NIP7Q9Y221 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.61□□□□□ -1.993e-23■□□□□ 10.2
NIP7Q9Y221 RPS3A-213ENST00000515792 671 ntTSL 32.61□□□□□ -1.993e-23■□□□□ 10.2
NIP7Q9Y221 SNORD73A-201ENST00000386062 65 ntBASIC2.12□□□□□ -2.073e-23■□□□□ 10.2
NIP7Q9Y221 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.693e-10■□□□□ 10.1
NIP7Q9Y221 RPL13A-208ENST00000477613 796 ntTSL 522.84■■□□□ 1.256e-75■□□□□ 10.1
NIP7Q9Y221 RPL13A-206ENST00000476268 1623 ntTSL 322.02■■□□□ 1.126e-75■□□□□ 10.1
NIP7Q9Y221 RPL13A-209ENST00000479992 850 ntTSL 320.62■□□□□ 0.896e-75■□□□□ 10.1
NIP7Q9Y221 RPL13A-202ENST00000467825 660 ntTSL 519.75■□□□□ 0.756e-75■□□□□ 10.1
NIP7Q9Y221 RPL13A-204ENST00000472481 728 ntTSL 219.6■□□□□ 0.736e-75■□□□□ 10.1
NIP7Q9Y221 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.76e-75■□□□□ 10.1
NIP7Q9Y221 RPL13A-214ENST00000624069 1122 ntTSL 1 (best)19.42■□□□□ 0.76e-75■□□□□ 10.1
NIP7Q9Y221 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC17.98■□□□□ 0.476e-75■□□□□ 10.1
NIP7Q9Y221 RPL13A-210ENST00000484279 794 ntTSL 517.98■□□□□ 0.476e-75■□□□□ 10.1
NIP7Q9Y221 RPL13A-212ENST00000488946 2312 ntTSL 216.76■□□□□ 0.276e-75■□□□□ 10.1
NIP7Q9Y221 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC26.78■■□□□ 1.882e-10■□□□□ 10.1
NIP7Q9Y221 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.771e-6■□□□□ 10.1
NIP7Q9Y221 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.762e-10■□□□□ 10.1
NIP7Q9Y221 BAG6-250ENST00000451898 993 ntTSL 324.64■■□□□ 1.541e-6■□□□□ 10.1
NIP7Q9Y221 CTSD-209ENST00000637158 1200 ntTSL 524.24■■□□□ 1.474e-13■□□□□ 10.1
NIP7Q9Y221 IER3-202ENST00000376377 1350 ntBASIC24.24■■□□□ 1.471e-6■□□□□ 10.1
NIP7Q9Y221 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.432e-10■□□□□ 10.1
NIP7Q9Y221 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.321e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-243ENST00000434444 766 ntTSL 322.74■■□□□ 1.231e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-248ENST00000441054 654 ntTSL 322.74■■□□□ 1.231e-6■□□□□ 10.1
NIP7Q9Y221 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.131e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-240ENST00000424480 1056 ntTSL 222.05■■□□□ 1.121e-6■□□□□ 10.1
NIP7Q9Y221 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.074e-13■□□□□ 10.1
NIP7Q9Y221 RPL29-208ENST00000492277 537 ntTSL 321.51■■□□□ 1.032e-10■□□□□ 10.1
NIP7Q9Y221 CTSD-205ENST00000438213 946 ntTSL 221.12■□□□□ 0.974e-13■□□□□ 10.1
NIP7Q9Y221 AC068580.4-204ENST00000427721 1007 ntTSL 221.01■□□□□ 0.954e-13■□□□□ 10.1
NIP7Q9Y221 CTSD-204ENST00000433655 2006 ntTSL 519.94■□□□□ 0.784e-13■□□□□ 10.1
NIP7Q9Y221 BAG6-251ENST00000452994 880 ntTSL 319.94■□□□□ 0.781e-6■□□□□ 10.1
NIP7Q9Y221 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.754e-13■□□□□ 10.1
NIP7Q9Y221 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.744e-13■□□□□ 10.1
NIP7Q9Y221 CTSD-202ENST00000367196 907 ntTSL 519.56■□□□□ 0.724e-13■□□□□ 10.1
Retrieved 100 of 1,619 protein–RNA pairs in 110 ms