RNA–Protein interactions for RNA: ENST00000496542.1

FN1-226, Transcript of fibronectin 1, humanhuman

TSL 2

Gene FN1, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-226ENST00000496542 NISCHQ9Y2I1 1504 aa32.23■■■□□ 2.75
FN1-226ENST00000496542 CCDC180Q9P1Z9 1646 aa28.88■■■□□ 2.21
FN1-226ENST00000496542 ABCC9O60706 1549 aa28.75■■■□□ 2.19
FN1-226ENST00000496542 RB1CC1Q8TDY2 1594 aa27.42■■□□□ 1.98
FN1-226ENST00000496542 NACADO15069 1562 aa27.25■■□□□ 1.95
FN1-226ENST00000496542 DCAF8L2P0C7V8 631 aa27.17■■□□□ 1.94
FN1-226ENST00000496542 MYO15BQ96JP2 1530 aa26.89■■□□□ 1.89
FN1-226ENST00000496542 UNC13AQ9UPW8 1703 aa26.83■■□□□ 1.89
FN1-226ENST00000496542 PABPN1Q86U42 306 aaKnown RBP eCLIP26.78■■□□□ 1.88
FN1-226ENST00000496542 DNAJC5BQ9UF47 199 aa26.78■■□□□ 1.88
FN1-226ENST00000496542 ZCCHC6Q5VYS8 1495 aaKnown RBP26.75■■□□□ 1.87
FN1-226ENST00000496542 DCAF1Q9Y4B6 1507 aa26.61■■□□□ 1.85
FN1-226ENST00000496542 BICRAQ9NZM4 1560 aa26.6■■□□□ 1.85
FN1-226ENST00000496542 SCRIBQ14160 1630 aa26.37■■□□□ 1.81
FN1-226ENST00000496542 SHROOM4Q9ULL8 1493 aa26.24■■□□□ 1.79
FN1-226ENST00000496542 CC2D2AQ9P2K1 1620 aa25.97■■□□□ 1.75
FN1-226ENST00000496542 EIF4G1Q04637 1599 aaKnown RBP25.95■■□□□ 1.74
FN1-226ENST00000496542 CECR2Q9BXF3 1484 aa25.87■■□□□ 1.73
FN1-226ENST00000496542 SMARCA4P51532 1647 aa25.14■■□□□ 1.61
FN1-226ENST00000496542 NCAPD3P42695 1498 aa25.13■■□□□ 1.61
FN1-226ENST00000496542 ATAD2BQ9ULI0 1458 aa25.1■■□□□ 1.61
FN1-226ENST00000496542 SMARCA2P51531 1590 aa25.05■■□□□ 1.6
FN1-226ENST00000496542 BAZ1AQ9NRL2 1556 aaPredicted RBP25.02■■□□□ 1.6
FN1-226ENST00000496542 HMGXB3Q12766 1538 aa24.99■■□□□ 1.59
FN1-226ENST00000496542 BAZ1BQ9UIG0 1483 aaKnown RBP24.89■■□□□ 1.58
FN1-226ENST00000496542 PEG3Q9GZU2 1588 aa24.86■■□□□ 1.57
FN1-226ENST00000496542 MROH2BQ7Z745 1585 aa24.85■■□□□ 1.57
FN1-226ENST00000496542 ERCC6Q03468 1493 aa24.83■■□□□ 1.57
FN1-226ENST00000496542 NESP48681 1621 aa24.74■■□□□ 1.55
FN1-226ENST00000496542 CUX2O14529 1486 aa24.7■■□□□ 1.54
FN1-226ENST00000496542 WIZO95785 1651 aa24.58■■□□□ 1.53
FN1-226ENST00000496542 LAMC3Q9Y6N6 1575 aa24.57■■□□□ 1.52
FN1-226ENST00000496542 DNAJC5Q9H3Z4 198 aa24.47■■□□□ 1.51
FN1-226ENST00000496542 THOC2Q8NI27 1593 aaKnown RBP24.46■■□□□ 1.51
FN1-226ENST00000496542 KIF21AQ7Z4S6 1674 aa24.45■■□□□ 1.5
FN1-226ENST00000496542 PDS5BQ9NTI5 1447 aa24.42■■□□□ 1.5
FN1-226ENST00000496542 CADPSQ9ULU8 1353 aa24.39■■□□□ 1.49
FN1-226ENST00000496542 RSF1Q96T23 1441 aaPredicted RBP24.37■■□□□ 1.49
FN1-226ENST00000496542 TOP2AP11388 1531 aaKnown RBP24.27■■□□□ 1.48
FN1-226ENST00000496542 MRC2Q9UBG0 1479 aa24.22■■□□□ 1.47
FN1-226ENST00000496542 CEP164Q9UPV0 1460 aa24.15■■□□□ 1.46
FN1-226ENST00000496542 WDR62O43379 1518 aa24.15■■□□□ 1.46
FN1-226ENST00000496542 CFTRP13569 1480 aa24.14■■□□□ 1.46
FN1-226ENST00000496542 FANCD2Q9BXW9 1451 aa24.14■■□□□ 1.46
FN1-226ENST00000496542 CCDC88BA6NC98 1476 aa23.98■■□□□ 1.43
FN1-226ENST00000496542 PRDM2Q13029 1718 aa23.98■■□□□ 1.43
FN1-226ENST00000496542 URB2Q14146 1524 aaKnown RBP23.94■■□□□ 1.42
FN1-226ENST00000496542 TOPBP1Q92547 1522 aa23.7■■□□□ 1.38
FN1-226ENST00000496542 IFT140Q96RY7 1462 aa23.66■■□□□ 1.38
FN1-226ENST00000496542 DNMBPQ6XZF7 1577 aa23.64■■□□□ 1.37
FN1-226ENST00000496542 ABCC8Q09428 1581 aa23.63■■□□□ 1.37
FN1-226ENST00000496542 ZNF608Q9ULD9 1512 aaPredicted RBP23.62■■□□□ 1.37
FN1-226ENST00000496542 OSCARQ8IYS5 282 aa23.57■■□□□ 1.36
FN1-226ENST00000496542 TRIM41Q8WV44 630 aa23.53■■□□□ 1.36
FN1-226ENST00000496542 EIF4G3O43432 1585 aaKnown RBP23.51■■□□□ 1.35
FN1-226ENST00000496542 TARBP1Q13395 1621 aaKnown RBP23.48■■□□□ 1.35
FN1-226ENST00000496542 POLA1P09884 1462 aaPredicted RBP23.46■■□□□ 1.35
FN1-226ENST00000496542 SUPT5HO00267 1087 aaKnown RBP23.45■■□□□ 1.34
FN1-226ENST00000496542 AQRO60306 1485 aaKnown RBP eCLIP23.41■■□□□ 1.342e-18■■■■■ 71.1
FN1-226ENST00000496542 RAD54L2Q9Y4B4 1467 aa23.38■■□□□ 1.33
FN1-226ENST00000496542 CUX1P39880 1505 aa23.35■■□□□ 1.33
FN1-226ENST00000496542 FGD5Q6ZNL6 1462 aa23.35■■□□□ 1.33
FN1-226ENST00000496542 SOGA1O94964 1423 aa23.34■■□□□ 1.33
FN1-226ENST00000496542 CHD1O14646 1710 aa23.33■■□□□ 1.32
FN1-226ENST00000496542 RIMBP3CA6NJZ7 1639 aa23.3■■□□□ 1.32
FN1-226ENST00000496542 RIMBP3BA6NNM3 1639 aa23.3■■□□□ 1.32
FN1-226ENST00000496542 RIMBP3Q9UFD9 1639 aa23.3■■□□□ 1.32
FN1-226ENST00000496542 TDRD9Q8NDG6 1382 aaKnown RBP23.29■■□□□ 1.32
FN1-226ENST00000496542 FBLN2P98095 1184 aa23.25■■□□□ 1.31
FN1-226ENST00000496542 ARHGEF11O15085 1522 aa23.23■■□□□ 1.31
FN1-226ENST00000496542 WDR97A6NE52 1622 aa23.23■■□□□ 1.31
FN1-226ENST00000496542 SNAPC4Q5SXM2 1469 aa23.2■■□□□ 1.3
FN1-226ENST00000496542 GRIN2BQ13224 1484 aa23.14■■□□□ 1.29
FN1-226ENST00000496542 MAGI1Q96QZ7 1491 aaPredicted RBP23.12■■□□□ 1.29
FN1-226ENST00000496542 PBRM1Q86U86 1689 aa23.09■■□□□ 1.29
FN1-226ENST00000496542 CHMP7Q8WUX9 453 aaPredicted RBP23.08■■□□□ 1.29
FN1-226ENST00000496542 GAPVD1Q14C86 1478 aa23.08■■□□□ 1.29
FN1-226ENST00000496542 ABCA10Q8WWZ4 1543 aa23.08■■□□□ 1.28
FN1-226ENST00000496542 SYNJ2O15056 1496 aa23.05■■□□□ 1.28
FN1-226ENST00000496542 ABCA5Q8WWZ7 1642 aa23.04■■□□□ 1.28
FN1-226ENST00000496542 SYNJ1O43426 1573 aa23.04■■□□□ 1.28
FN1-226ENST00000496542 CYB5RLQ6IPT4 315 aa23.03■■□□□ 1.28
FN1-226ENST00000496542 CLASP1Q7Z460 1538 aa23.03■■□□□ 1.28
FN1-226ENST00000496542 BIVM-ERCC5R4GMW8 1640 aa23.02■■□□□ 1.28
FN1-226ENST00000496542 TOP2BQ02880 1626 aa23.01■■□□□ 1.27
FN1-226ENST00000496542 WRNQ14191 1432 aaPredicted RBP eCLIP23.01■■□□□ 1.27
FN1-226ENST00000496542 ARAP1Q96P48 1450 aa23.01■■□□□ 1.27
FN1-226ENST00000496542 ADAMTS12P58397 1594 aa22.88■■□□□ 1.25
FN1-226ENST00000496542 GRIN2AQ12879 1464 aa22.85■■□□□ 1.25
FN1-226ENST00000496542 ERICH3Q5RHP9 1530 aa22.79■■□□□ 1.24
FN1-226ENST00000496542 FHAD1B1AJZ9 1412 aa22.79■■□□□ 1.24
FN1-226ENST00000496542 CEP170Q5SW79 1584 aa22.76■■□□□ 1.23
FN1-226ENST00000496542 TRHP20396 242 aaPredicted RBP22.75■■□□□ 1.23
FN1-226ENST00000496542 NUP160Q12769 1436 aa22.74■■□□□ 1.23
FN1-226ENST00000496542 ERCC6L2Q5T890 1561 aa22.69■■□□□ 1.22
FN1-226ENST00000496542 SHROOM2Q13796 1616 aa22.64■■□□□ 1.22
FN1-226ENST00000496542 KIF27Q86VH2 1401 aa22.57■■□□□ 1.2
FN1-226ENST00000496542 RUSC2Q8N2Y8 1516 aa22.54■■□□□ 1.2
FN1-226ENST00000496542 PRG4Q92954 1404 aaPredicted RBP22.53■■□□□ 1.2
FN1-226ENST00000496542 CUL7Q14999 1698 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms