RNA–Protein interactions for RNA: ENST00000367196.3

CTSD-202, Transcript of cathepsin D, humanhuman

TSL 5

Gene CTSD, Length 907 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-202ENST00000367196 NISCHQ9Y2I1 1504 aa36.91■■■■□ 3.5
CTSD-202ENST00000367196 CCDC180Q9P1Z9 1646 aa33.16■■■□□ 2.9
CTSD-202ENST00000367196 ABCC9O60706 1549 aa32.87■■■□□ 2.85
CTSD-202ENST00000367196 RB1CC1Q8TDY2 1594 aa31.47■■■□□ 2.63
CTSD-202ENST00000367196 NACADO15069 1562 aa31.29■■■□□ 2.6
CTSD-202ENST00000367196 DCAF8L2P0C7V8 631 aa31.01■■■□□ 2.55
CTSD-202ENST00000367196 MYO15BQ96JP2 1530 aa30.93■■■□□ 2.54
CTSD-202ENST00000367196 UNC13AQ9UPW8 1703 aa30.69■■■□□ 2.5
CTSD-202ENST00000367196 ZCCHC6Q5VYS8 1495 aaKnown RBP30.64■■■□□ 2.5
CTSD-202ENST00000367196 DCAF1Q9Y4B6 1507 aa30.57■■■□□ 2.48
CTSD-202ENST00000367196 PABPN1Q86U42 306 aaKnown RBP eCLIP30.56■■■□□ 2.48
CTSD-202ENST00000367196 DNAJC5BQ9UF47 199 aa30.56■■■□□ 2.48
CTSD-202ENST00000367196 BICRAQ9NZM4 1560 aa30.44■■■□□ 2.46
CTSD-202ENST00000367196 SHROOM4Q9ULL8 1493 aa30.23■■■□□ 2.43
CTSD-202ENST00000367196 SCRIBQ14160 1630 aa30.13■■■□□ 2.41
CTSD-202ENST00000367196 CC2D2AQ9P2K1 1620 aa29.74■■■□□ 2.35
CTSD-202ENST00000367196 EIF4G1Q04637 1599 aaKnown RBP29.73■■■□□ 2.35
CTSD-202ENST00000367196 CECR2Q9BXF3 1484 aa29.64■■■□□ 2.34
CTSD-202ENST00000367196 NCAPD3P42695 1498 aa28.83■■■□□ 2.21
CTSD-202ENST00000367196 SMARCA4P51532 1647 aa28.78■■■□□ 2.2
CTSD-202ENST00000367196 SMARCA2P51531 1590 aa28.75■■■□□ 2.19
CTSD-202ENST00000367196 ATAD2BQ9ULI0 1458 aa28.74■■■□□ 2.19
CTSD-202ENST00000367196 BAZ1AQ9NRL2 1556 aaPredicted RBP28.71■■■□□ 2.19
CTSD-202ENST00000367196 HMGXB3Q12766 1538 aa28.69■■■□□ 2.18
CTSD-202ENST00000367196 PEG3Q9GZU2 1588 aa28.54■■■□□ 2.16
CTSD-202ENST00000367196 BAZ1BQ9UIG0 1483 aaKnown RBP28.52■■■□□ 2.16
CTSD-202ENST00000367196 ERCC6Q03468 1493 aa28.46■■■□□ 2.15
CTSD-202ENST00000367196 MROH2BQ7Z745 1585 aa28.39■■■□□ 2.14
CTSD-202ENST00000367196 CUX2O14529 1486 aa28.38■■■□□ 2.13
CTSD-202ENST00000367196 NESP48681 1621 aa28.25■■■□□ 2.11
CTSD-202ENST00000367196 LAMC3Q9Y6N6 1575 aa28.21■■■□□ 2.11
CTSD-202ENST00000367196 DNAJC5Q9H3Z4 198 aa28.08■■■□□ 2.09
CTSD-202ENST00000367196 WIZO95785 1651 aa28.07■■■□□ 2.08
CTSD-202ENST00000367196 PDS5BQ9NTI5 1447 aa28.03■■■□□ 2.08
CTSD-202ENST00000367196 THOC2Q8NI27 1593 aaKnown RBP28.03■■■□□ 2.08
CTSD-202ENST00000367196 KIF21AQ7Z4S6 1674 aa27.97■■■□□ 2.07
CTSD-202ENST00000367196 CADPSQ9ULU8 1353 aa27.95■■■□□ 2.06
CTSD-202ENST00000367196 RSF1Q96T23 1441 aaPredicted RBP27.86■■■□□ 2.05
CTSD-202ENST00000367196 TOP2AP11388 1531 aaKnown RBP27.81■■■□□ 2.04
CTSD-202ENST00000367196 MRC2Q9UBG0 1479 aa27.76■■■□□ 2.04
CTSD-202ENST00000367196 CEP164Q9UPV0 1460 aa27.7■■■□□ 2.02
CTSD-202ENST00000367196 WDR62O43379 1518 aa27.69■■■□□ 2.02
CTSD-202ENST00000367196 CFTRP13569 1480 aa27.67■■■□□ 2.02
CTSD-202ENST00000367196 FANCD2Q9BXW9 1451 aa27.64■■■□□ 2.02
CTSD-202ENST00000367196 PRDM2Q13029 1718 aa27.51■■□□□ 1.99
CTSD-202ENST00000367196 CCDC88BA6NC98 1476 aa27.41■■□□□ 1.98
CTSD-202ENST00000367196 URB2Q14146 1524 aaKnown RBP27.36■■□□□ 1.97
CTSD-202ENST00000367196 ABCC8Q09428 1581 aa27.18■■□□□ 1.94
CTSD-202ENST00000367196 IFT140Q96RY7 1462 aa27.14■■□□□ 1.94
CTSD-202ENST00000367196 TOPBP1Q92547 1522 aa27.13■■□□□ 1.93
CTSD-202ENST00000367196 DNMBPQ6XZF7 1577 aa27.09■■□□□ 1.93
CTSD-202ENST00000367196 OSCARQ8IYS5 282 aa27.04■■□□□ 1.92
CTSD-202ENST00000367196 ZNF608Q9ULD9 1512 aaPredicted RBP26.98■■□□□ 1.91
CTSD-202ENST00000367196 EIF4G3O43432 1585 aaKnown RBP26.93■■□□□ 1.9
CTSD-202ENST00000367196 TRIM41Q8WV44 630 aa26.9■■□□□ 1.9
CTSD-202ENST00000367196 TARBP1Q13395 1621 aaKnown RBP26.87■■□□□ 1.89
CTSD-202ENST00000367196 POLA1P09884 1462 aaPredicted RBP26.86■■□□□ 1.89
CTSD-202ENST00000367196 AQRO60306 1485 aaKnown RBP eCLIP26.75■■□□□ 1.879e-7■■■■■ 31.1
CTSD-202ENST00000367196 WDR97A6NE52 1622 aa26.75■■□□□ 1.87
CTSD-202ENST00000367196 SOGA1O94964 1423 aa26.73■■□□□ 1.87
CTSD-202ENST00000367196 FGD5Q6ZNL6 1462 aa26.71■■□□□ 1.87
CTSD-202ENST00000367196 RAD54L2Q9Y4B4 1467 aa26.7■■□□□ 1.87
CTSD-202ENST00000367196 SUPT5HO00267 1087 aaKnown RBP26.7■■□□□ 1.86
CTSD-202ENST00000367196 CHD1O14646 1710 aa26.69■■□□□ 1.86
CTSD-202ENST00000367196 CUX1P39880 1505 aa26.68■■□□□ 1.86
CTSD-202ENST00000367196 RIMBP3CA6NJZ7 1639 aa26.68■■□□□ 1.86
CTSD-202ENST00000367196 RIMBP3BA6NNM3 1639 aa26.68■■□□□ 1.86
CTSD-202ENST00000367196 RIMBP3Q9UFD9 1639 aa26.68■■□□□ 1.86
CTSD-202ENST00000367196 ARHGEF11O15085 1522 aa26.62■■□□□ 1.85
CTSD-202ENST00000367196 TDRD9Q8NDG6 1382 aaKnown RBP26.61■■□□□ 1.85
CTSD-202ENST00000367196 FBLN2P98095 1184 aa26.58■■□□□ 1.85
CTSD-202ENST00000367196 SNAPC4Q5SXM2 1469 aa26.54■■□□□ 1.84
CTSD-202ENST00000367196 MAGI1Q96QZ7 1491 aaPredicted RBP26.54■■□□□ 1.84
CTSD-202ENST00000367196 GRIN2BQ13224 1484 aa26.53■■□□□ 1.84
CTSD-202ENST00000367196 PBRM1Q86U86 1689 aa26.45■■□□□ 1.82
CTSD-202ENST00000367196 SYNJ1O43426 1573 aa26.45■■□□□ 1.82
CTSD-202ENST00000367196 ABCA10Q8WWZ4 1543 aa26.44■■□□□ 1.82
CTSD-202ENST00000367196 CHMP7Q8WUX9 453 aaPredicted RBP26.44■■□□□ 1.82
CTSD-202ENST00000367196 GAPVD1Q14C86 1478 aa26.43■■□□□ 1.82
CTSD-202ENST00000367196 SYNJ2O15056 1496 aa26.42■■□□□ 1.82
CTSD-202ENST00000367196 ABCA5Q8WWZ7 1642 aa26.39■■□□□ 1.82
CTSD-202ENST00000367196 CLASP1Q7Z460 1538 aa26.38■■□□□ 1.81
CTSD-202ENST00000367196 WRNQ14191 1432 aaPredicted RBP eCLIP26.38■■□□□ 1.81
CTSD-202ENST00000367196 TOP2BQ02880 1626 aa26.36■■□□□ 1.81
CTSD-202ENST00000367196 BIVM-ERCC5R4GMW8 1640 aa26.36■■□□□ 1.81
CTSD-202ENST00000367196 CYB5RLQ6IPT4 315 aa26.35■■□□□ 1.81
CTSD-202ENST00000367196 ARAP1Q96P48 1450 aa26.34■■□□□ 1.81
CTSD-202ENST00000367196 ADAMTS12P58397 1594 aa26.2■■□□□ 1.78
CTSD-202ENST00000367196 GRIN2AQ12879 1464 aa26.17■■□□□ 1.78
CTSD-202ENST00000367196 ERICH3Q5RHP9 1530 aa26.15■■□□□ 1.78
CTSD-202ENST00000367196 FHAD1B1AJZ9 1412 aa26.12■■□□□ 1.77
CTSD-202ENST00000367196 NUP160Q12769 1436 aa26.06■■□□□ 1.76
CTSD-202ENST00000367196 TRHP20396 242 aaPredicted RBP26.05■■□□□ 1.76
CTSD-202ENST00000367196 CEP170Q5SW79 1584 aa26.04■■□□□ 1.76
CTSD-202ENST00000367196 SHROOM2Q13796 1616 aa25.96■■□□□ 1.75
CTSD-202ENST00000367196 ERCC6L2Q5T890 1561 aa25.89■■□□□ 1.73
CTSD-202ENST00000367196 KIF27Q86VH2 1401 aa25.86■■□□□ 1.73
CTSD-202ENST00000367196 CUL7Q14999 1698 aa25.83■■□□□ 1.73
CTSD-202ENST00000367196 RUSC2Q8N2Y8 1516 aa25.83■■□□□ 1.72
CTSD-202ENST00000367196 PRG4Q92954 1404 aaPredicted RBP25.8■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms