RNA–Protein interactions for RNA: ENST00000438213.5

CTSD-205, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-205ENST00000438213 NISCHQ9Y2I1 1504 aa39.41■■■■□ 3.9
CTSD-205ENST00000438213 CCDC180Q9P1Z9 1646 aa34.95■■■■□ 3.18
CTSD-205ENST00000438213 ABCC9O60706 1549 aa34.24■■■■□ 3.07
CTSD-205ENST00000438213 DCAF8L2P0C7V8 631 aa33.11■■■□□ 2.89
CTSD-205ENST00000438213 RB1CC1Q8TDY2 1594 aa32.95■■■□□ 2.86
CTSD-205ENST00000438213 NACADO15069 1562 aa32.93■■■□□ 2.86
CTSD-205ENST00000438213 ZCCHC6Q5VYS8 1495 aaKnown RBP32.8■■■□□ 2.84
CTSD-205ENST00000438213 MYO15BQ96JP2 1530 aa32.74■■■□□ 2.83
CTSD-205ENST00000438213 DCAF1Q9Y4B6 1507 aa32.61■■■□□ 2.81
CTSD-205ENST00000438213 PABPN1Q86U42 306 aaKnown RBP eCLIP32.08■■■□□ 2.73
CTSD-205ENST00000438213 UNC13AQ9UPW8 1703 aa32.06■■■□□ 2.72
CTSD-205ENST00000438213 SCRIBQ14160 1630 aa31.9■■■□□ 2.7
CTSD-205ENST00000438213 BICRAQ9NZM4 1560 aa31.87■■■□□ 2.69
CTSD-205ENST00000438213 SHROOM4Q9ULL8 1493 aa31.61■■■□□ 2.65
CTSD-205ENST00000438213 DNAJC5BQ9UF47 199 aa31.43■■■□□ 2.62
CTSD-205ENST00000438213 EIF4G1Q04637 1599 aaKnown RBP31.06■■■□□ 2.56
CTSD-205ENST00000438213 CC2D2AQ9P2K1 1620 aa30.93■■■□□ 2.54
CTSD-205ENST00000438213 CECR2Q9BXF3 1484 aa30.77■■■□□ 2.52
CTSD-205ENST00000438213 BAZ1AQ9NRL2 1556 aaPredicted RBP30.54■■■□□ 2.48
CTSD-205ENST00000438213 SMARCA4P51532 1647 aa30.52■■■□□ 2.48
CTSD-205ENST00000438213 NCAPD3P42695 1498 aa30.42■■■□□ 2.46
CTSD-205ENST00000438213 ATAD2BQ9ULI0 1458 aa30.41■■■□□ 2.46
CTSD-205ENST00000438213 SMARCA2P51531 1590 aa30.38■■■□□ 2.45
CTSD-205ENST00000438213 MROH2BQ7Z745 1585 aa30.35■■■□□ 2.45
CTSD-205ENST00000438213 PEG3Q9GZU2 1588 aa30.23■■■□□ 2.43
CTSD-205ENST00000438213 HMGXB3Q12766 1538 aa30.2■■■□□ 2.42
CTSD-205ENST00000438213 BAZ1BQ9UIG0 1483 aaKnown RBP30.17■■■□□ 2.42
CTSD-205ENST00000438213 RSF1Q96T23 1441 aaPredicted RBP30.06■■■□□ 2.4
CTSD-205ENST00000438213 WIZO95785 1651 aa30■■■□□ 2.39
CTSD-205ENST00000438213 TOP2AP11388 1531 aaKnown RBP29.71■■■□□ 2.35
CTSD-205ENST00000438213 NESP48681 1621 aa29.61■■■□□ 2.33
CTSD-205ENST00000438213 CADPSQ9ULU8 1353 aa29.56■■■□□ 2.32
CTSD-205ENST00000438213 LAMC3Q9Y6N6 1575 aa29.56■■■□□ 2.32
CTSD-205ENST00000438213 ERCC6Q03468 1493 aa29.55■■■□□ 2.32
CTSD-205ENST00000438213 SUPT5HO00267 1087 aaKnown RBP29.46■■■□□ 2.31
CTSD-205ENST00000438213 PDS5BQ9NTI5 1447 aa29.45■■■□□ 2.31
CTSD-205ENST00000438213 CCDC88BA6NC98 1476 aa29.41■■■□□ 2.3
CTSD-205ENST00000438213 CFTRP13569 1480 aa29.35■■■□□ 2.29
CTSD-205ENST00000438213 CUX2O14529 1486 aa29.2■■■□□ 2.26
CTSD-205ENST00000438213 KIF21AQ7Z4S6 1674 aa29.19■■■□□ 2.26
CTSD-205ENST00000438213 FANCD2Q9BXW9 1451 aa29.17■■■□□ 2.26
CTSD-205ENST00000438213 CEP164Q9UPV0 1460 aa29.13■■■□□ 2.25
CTSD-205ENST00000438213 THOC2Q8NI27 1593 aaKnown RBP29.08■■■□□ 2.25
CTSD-205ENST00000438213 MRC2Q9UBG0 1479 aa29.07■■■□□ 2.24
CTSD-205ENST00000438213 PRDM2Q13029 1718 aa28.99■■■□□ 2.23
CTSD-205ENST00000438213 WDR62O43379 1518 aa28.93■■■□□ 2.22
CTSD-205ENST00000438213 URB2Q14146 1524 aaKnown RBP28.84■■■□□ 2.21
CTSD-205ENST00000438213 ABCC8Q09428 1581 aa28.77■■■□□ 2.2
CTSD-205ENST00000438213 TOPBP1Q92547 1522 aa28.69■■■□□ 2.18
CTSD-205ENST00000438213 DNMBPQ6XZF7 1577 aa28.64■■■□□ 2.18
CTSD-205ENST00000438213 IFT140Q96RY7 1462 aa28.54■■■□□ 2.16
CTSD-205ENST00000438213 CUX1P39880 1505 aa28.46■■■□□ 2.15
CTSD-205ENST00000438213 POLA1P09884 1462 aaPredicted RBP28.45■■■□□ 2.14
CTSD-205ENST00000438213 SOGA1O94964 1423 aa28.42■■■□□ 2.14
CTSD-205ENST00000438213 FGD5Q6ZNL6 1462 aa28.39■■■□□ 2.13
CTSD-205ENST00000438213 WRNQ14191 1432 aaPredicted RBP eCLIP28.36■■■□□ 2.13
CTSD-205ENST00000438213 ZNF608Q9ULD9 1512 aaPredicted RBP28.35■■■□□ 2.13
CTSD-205ENST00000438213 DNAJC5Q9H3Z4 198 aa28.35■■■□□ 2.13
CTSD-205ENST00000438213 RAD54L2Q9Y4B4 1467 aa28.34■■■□□ 2.13
CTSD-205ENST00000438213 TARBP1Q13395 1621 aaKnown RBP28.32■■■□□ 2.12
CTSD-205ENST00000438213 AQRO60306 1485 aaKnown RBP eCLIP28.26■■■□□ 2.111e-6■■■■■ 31.1
CTSD-205ENST00000438213 TDRD9Q8NDG6 1382 aaKnown RBP28.24■■■□□ 2.11
CTSD-205ENST00000438213 TOP2BQ02880 1626 aa28.23■■■□□ 2.11
CTSD-205ENST00000438213 BIVM-ERCC5R4GMW8 1640 aa28.19■■■□□ 2.1
CTSD-205ENST00000438213 SYNJ1O43426 1573 aa28.19■■■□□ 2.1
CTSD-205ENST00000438213 EIF4G3O43432 1585 aaKnown RBP28.19■■■□□ 2.1
CTSD-205ENST00000438213 WDR97A6NE52 1622 aa28.14■■■□□ 2.09
CTSD-205ENST00000438213 OSCARQ8IYS5 282 aa28.13■■■□□ 2.09
CTSD-205ENST00000438213 ABCA10Q8WWZ4 1543 aa28.13■■■□□ 2.09
CTSD-205ENST00000438213 GAPVD1Q14C86 1478 aa28.05■■■□□ 2.08
CTSD-205ENST00000438213 GRIN2BQ13224 1484 aa28.04■■■□□ 2.08
CTSD-205ENST00000438213 FBLN2P98095 1184 aa28.02■■■□□ 2.08
CTSD-205ENST00000438213 CHMP7Q8WUX9 453 aaPredicted RBP27.95■■■□□ 2.06
CTSD-205ENST00000438213 SNAPC4Q5SXM2 1469 aa27.95■■■□□ 2.06
CTSD-205ENST00000438213 MAGI1Q96QZ7 1491 aaPredicted RBP27.95■■■□□ 2.06
CTSD-205ENST00000438213 ABCA5Q8WWZ7 1642 aa27.93■■■□□ 2.06
CTSD-205ENST00000438213 PBRM1Q86U86 1689 aa27.86■■■□□ 2.05
CTSD-205ENST00000438213 SYNJ2O15056 1496 aa27.84■■■□□ 2.05
CTSD-205ENST00000438213 TRIM41Q8WV44 630 aa27.84■■■□□ 2.05
CTSD-205ENST00000438213 CHD1O14646 1710 aa27.81■■■□□ 2.04
CTSD-205ENST00000438213 KIF27Q86VH2 1401 aa27.81■■■□□ 2.04
CTSD-205ENST00000438213 ERICH3Q5RHP9 1530 aa27.79■■■□□ 2.04
CTSD-205ENST00000438213 FHAD1B1AJZ9 1412 aa27.75■■■□□ 2.03
CTSD-205ENST00000438213 IGF1RP08069 1367 aa27.7■■■□□ 2.02
CTSD-205ENST00000438213 ADAMTS12P58397 1594 aa27.66■■■□□ 2.02
CTSD-205ENST00000438213 GRIN2AQ12879 1464 aa27.64■■■□□ 2.02
CTSD-205ENST00000438213 CARMIL1Q5VZK9 1371 aa27.55■■■□□ 2
CTSD-205ENST00000438213 CLASP1Q7Z460 1538 aa27.54■■■□□ 2
CTSD-205ENST00000438213 NUP160Q12769 1436 aa27.52■■■□□ 2
CTSD-205ENST00000438213 ARHGEF11O15085 1522 aa27.51■■□□□ 1.99
CTSD-205ENST00000438213 CUL7Q14999 1698 aa27.5■■□□□ 1.99
CTSD-205ENST00000438213 CHIC1Q5VXU3 224 aa27.49■■□□□ 1.99
CTSD-205ENST00000438213 RUSC2Q8N2Y8 1516 aa27.49■■□□□ 1.99
CTSD-205ENST00000438213 RIMBP3CA6NJZ7 1639 aa27.47■■□□□ 1.99
CTSD-205ENST00000438213 RIMBP3BA6NNM3 1639 aa27.47■■□□□ 1.99
CTSD-205ENST00000438213 RIMBP3Q9UFD9 1639 aa27.47■■□□□ 1.99
CTSD-205ENST00000438213 CEP170Q5SW79 1584 aa27.45■■□□□ 1.99
CTSD-205ENST00000438213 CYB5RLQ6IPT4 315 aa27.4■■□□□ 1.98
CTSD-205ENST00000438213 JPH4Q96JJ6 628 aa27.38■■□□□ 1.97
CTSD-205ENST00000438213 RAPGEF2Q9Y4G8 1499 aa27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms