RNA–Protein interactions for RNA: ENST00000637815.1

CTSD-212, Transcript of cathepsin D, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTSD, Length 2,003 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-212ENST00000637815 NISCHQ9Y2I1 1504 aa39.99■■■■□ 3.99
CTSD-212ENST00000637815 CCDC180Q9P1Z9 1646 aa34.48■■■■□ 3.11
CTSD-212ENST00000637815 ZCCHC6Q5VYS8 1495 aaKnown RBP33.77■■■■□ 3
CTSD-212ENST00000637815 SHROOM4Q9ULL8 1493 aa33.25■■■□□ 2.91
CTSD-212ENST00000637815 DCAF1Q9Y4B6 1507 aa33.03■■■□□ 2.88
CTSD-212ENST00000637815 DCAF8L2P0C7V8 631 aa32.72■■■□□ 2.83
CTSD-212ENST00000637815 SUPT5HO00267 1087 aaKnown RBP32.38■■■□□ 2.77
CTSD-212ENST00000637815 MYO15BQ96JP2 1530 aa32.31■■■□□ 2.76
CTSD-212ENST00000637815 NACADO15069 1562 aa31.87■■■□□ 2.69
CTSD-212ENST00000637815 SCRIBQ14160 1630 aa31.87■■■□□ 2.69
CTSD-212ENST00000637815 ABCC9O60706 1549 aa31.86■■■□□ 2.69
CTSD-212ENST00000637815 CHIC1Q5VXU3 224 aa31.45■■■□□ 2.63
CTSD-212ENST00000637815 RB1CC1Q8TDY2 1594 aa31.41■■■□□ 2.62
CTSD-212ENST00000637815 RSF1Q96T23 1441 aaPredicted RBP31.36■■■□□ 2.61
CTSD-212ENST00000637815 CECR2Q9BXF3 1484 aa31.04■■■□□ 2.56
CTSD-212ENST00000637815 UNC13AQ9UPW8 1703 aa30.98■■■□□ 2.55
CTSD-212ENST00000637815 MROH2BQ7Z745 1585 aa30.96■■■□□ 2.55
CTSD-212ENST00000637815 WIZO95785 1651 aa30.79■■■□□ 2.52
CTSD-212ENST00000637815 BAZ1AQ9NRL2 1556 aaPredicted RBP30.79■■■□□ 2.52
CTSD-212ENST00000637815 SMARCA4P51532 1647 aa30.59■■■□□ 2.49
CTSD-212ENST00000637815 BICRAQ9NZM4 1560 aa30.53■■■□□ 2.48
CTSD-212ENST00000637815 TOP2AP11388 1531 aaKnown RBP30.43■■■□□ 2.46
CTSD-212ENST00000637815 TRIM41Q8WV44 630 aa30.35■■■□□ 2.45
CTSD-212ENST00000637815 EIF4G1Q04637 1599 aaKnown RBP30.34■■■□□ 2.45
CTSD-212ENST00000637815 LOC105371045A0A1W2PR82 267 aa30.31■■■□□ 2.44
CTSD-212ENST00000637815 PABPN1Q86U42 306 aaKnown RBP eCLIP30.2■■■□□ 2.431e-12■□□□□ 10
CTSD-212ENST00000637815 SMARCA2P51531 1590 aa30.2■■■□□ 2.43
CTSD-212ENST00000637815 PEG3Q9GZU2 1588 aa30.16■■■□□ 2.42
CTSD-212ENST00000637815 CCDC88BA6NC98 1476 aa30.14■■■□□ 2.42
CTSD-212ENST00000637815 FAM9AQ8IZU1 332 aaPredicted RBP29.86■■■□□ 2.37
CTSD-212ENST00000637815 ATAD2BQ9ULI0 1458 aa29.84■■■□□ 2.37
CTSD-212ENST00000637815 ABCC8Q09428 1581 aa29.83■■■□□ 2.37
CTSD-212ENST00000637815 PCGF6Q9BYE7 350 aa29.81■■■□□ 2.36
CTSD-212ENST00000637815 BAZ1BQ9UIG0 1483 aaKnown RBP29.71■■■□□ 2.35
CTSD-212ENST00000637815 HRCP23327 699 aa29.64■■■□□ 2.33
CTSD-212ENST00000637815 TRIM26Q12899 539 aaPredicted RBP29.55■■■□□ 2.32
CTSD-212ENST00000637815 HMGXB3Q12766 1538 aa29.47■■■□□ 2.31
CTSD-212ENST00000637815 WRNQ14191 1432 aaPredicted RBP eCLIP29.46■■■□□ 2.31
CTSD-212ENST00000637815 EEA1Q15075 1411 aa29.45■■■□□ 2.31
CTSD-212ENST00000637815 EHMT2Q96KQ7 1210 aa29.44■■■□□ 2.3
CTSD-212ENST00000637815 SOGA1O94964 1423 aa29.41■■■□□ 2.3
CTSD-212ENST00000637815 NCAPD3P42695 1498 aa29.41■■■□□ 2.3
CTSD-212ENST00000637815 SYNJ1O43426 1573 aa29.38■■■□□ 2.29
CTSD-212ENST00000637815 RUSC2Q8N2Y8 1516 aa29.28■■■□□ 2.28
CTSD-212ENST00000637815 CSRNP3Q8WYN3 585 aa29.22■■■□□ 2.27
CTSD-212ENST00000637815 TNIKQ9UKE5 1360 aa29.19■■■□□ 2.26
CTSD-212ENST00000637815 TOP2BQ02880 1626 aa29.17■■■□□ 2.26
CTSD-212ENST00000637815 BIVM-ERCC5R4GMW8 1640 aa29.14■■■□□ 2.25
CTSD-212ENST00000637815 CEP162Q5TB80 1403 aa29.13■■■□□ 2.25
CTSD-212ENST00000637815 GOLGA3Q08378 1498 aa29.12■■■□□ 2.25
CTSD-212ENST00000637815 KIF21BO75037 1637 aa29.1■■■□□ 2.25
CTSD-212ENST00000637815 CEP164Q9UPV0 1460 aa29.03■■■□□ 2.24
CTSD-212ENST00000637815 PRDM2Q13029 1718 aa29.02■■■□□ 2.24
CTSD-212ENST00000637815 CFTRP13569 1480 aa29.01■■■□□ 2.24
CTSD-212ENST00000637815 UBTFP17480 764 aaKnown RBP28.93■■■□□ 2.22
CTSD-212ENST00000637815 CUX1P39880 1505 aa28.89■■■□□ 2.22
CTSD-212ENST00000637815 CC2D2AQ9P2K1 1620 aa28.87■■■□□ 2.21
CTSD-212ENST00000637815 PPARGC1BQ86YN6 1023 aaKnown RBP28.86■■■□□ 2.21
CTSD-212ENST00000637815 RAPGEF2Q9Y4G8 1499 aa28.78■■■□□ 2.2
CTSD-212ENST00000637815 ZEB1P37275 1124 aaPredicted RBP28.77■■■□□ 2.2
CTSD-212ENST00000637815 ERICH3Q5RHP9 1530 aa28.73■■■□□ 2.19
CTSD-212ENST00000637815 CADPSQ9ULU8 1353 aa28.71■■■□□ 2.19
CTSD-212ENST00000637815 CLIP1P30622 1438 aa28.69■■■□□ 2.18
CTSD-212ENST00000637815 PRXQ9BXM0 1461 aa28.68■■■□□ 2.18
CTSD-212ENST00000637815 KIF27Q86VH2 1401 aa28.62■■■□□ 2.17
CTSD-212ENST00000637815 VPS8Q8N3P4 1428 aa28.56■■■□□ 2.16
CTSD-212ENST00000637815 FANCD2Q9BXW9 1451 aa28.43■■■□□ 2.14
CTSD-212ENST00000637815 FGD5Q6ZNL6 1462 aa28.42■■■□□ 2.14
CTSD-212ENST00000637815 TTBK1Q5TCY1 1321 aaPredicted RBP28.41■■■□□ 2.14
CTSD-212ENST00000637815 CUX2O14529 1486 aa28.38■■■□□ 2.13
CTSD-212ENST00000637815 ARAP1Q96P48 1450 aa28.34■■■□□ 2.13
CTSD-212ENST00000637815 DNMBPQ6XZF7 1577 aa28.34■■■□□ 2.13
CTSD-212ENST00000637815 IGF1RP08069 1367 aa28.3■■■□□ 2.12
CTSD-212ENST00000637815 LAMC3Q9Y6N6 1575 aa28.29■■■□□ 2.12
CTSD-212ENST00000637815 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.29■■■□□ 2.12
CTSD-212ENST00000637815 NESP48681 1621 aa28.27■■■□□ 2.12
CTSD-212ENST00000637815 CCER1Q8TC90 406 aaPredicted RBP28.24■■■□□ 2.11
CTSD-212ENST00000637815 TOPBP1Q92547 1522 aa28.24■■■□□ 2.11
CTSD-212ENST00000637815 RANGAP1P46060 587 aaPredicted RBP28.23■■■□□ 2.11
CTSD-212ENST00000637815 APLP2Q06481 763 aa28.23■■■□□ 2.11
CTSD-212ENST00000637815 ABCA10Q8WWZ4 1543 aa28.18■■■□□ 2.1
CTSD-212ENST00000637815 ARHGAP35Q9NRY4 1499 aa28.17■■■□□ 2.1
CTSD-212ENST00000637815 POLA1P09884 1462 aaPredicted RBP28.17■■■□□ 2.1
CTSD-212ENST00000637815 CARMIL1Q5VZK9 1371 aa28.16■■■□□ 2.1
CTSD-212ENST00000637815 RAD54L2Q9Y4B4 1467 aa28.09■■■□□ 2.09
CTSD-212ENST00000637815 WDR97A6NE52 1622 aa28.08■■■□□ 2.09
CTSD-212ENST00000637815 URB2Q14146 1524 aaKnown RBP28.06■■■□□ 2.08
CTSD-212ENST00000637815 CUL7Q14999 1698 aa28.04■■■□□ 2.08
CTSD-212ENST00000637815 PDS5BQ9NTI5 1447 aa28■■■□□ 2.07
CTSD-212ENST00000637815 KIF21AQ7Z4S6 1674 aa27.98■■■□□ 2.07
CTSD-212ENST00000637815 ABCA5Q8WWZ7 1642 aa27.92■■■□□ 2.06
CTSD-212ENST00000637815 HNRNPUL2Q1KMD3 747 aaKnown RBP27.92■■■□□ 2.06
CTSD-212ENST00000637815 KANK4Q5T7N3 995 aaPredicted RBP27.92■■■□□ 2.06
CTSD-212ENST00000637815 DNAJC5BQ9UF47 199 aa27.91■■■□□ 2.06
CTSD-212ENST00000637815 MAP3K1Q13233 1512 aa27.91■■■□□ 2.06
CTSD-212ENST00000637815 CTTNBP2Q8WZ74 1663 aa27.91■■■□□ 2.06
CTSD-212ENST00000637815 RRBP1Q9P2E9 1410 aaKnown RBP27.86■■■□□ 2.05
CTSD-212ENST00000637815 TIAM1Q13009 1591 aa27.85■■■□□ 2.05
CTSD-212ENST00000637815 EFCAB5A4FU69 1503 aa27.83■■■□□ 2.05
CTSD-212ENST00000637815 FHAD1B1AJZ9 1412 aa27.8■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms