Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.292e-7■■■■■ 30.6
LSM11P83369 CDK5RAP2-212ENST00000480112 5826 ntTSL 1 (best)11.31□□□□□ -0.62e-7■■■■■ 30.6
LSM11P83369 CDK5RAP2-201ENST00000349780 6228 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.732e-7■■■■■ 30.6
LSM11P83369 CDK5RAP2-203ENST00000360822 5551 ntAPPRIS ALT2 TSL 5 BASIC8.5□□□□□ -1.052e-7■■■■■ 30.6
LSM11P83369 CDK5RAP2-209ENST00000473282 5956 ntTSL 1 (best)7.4□□□□□ -1.232e-7■■■■■ 30.6
LSM11P83369 PPOX-212ENST00000495483 2471 ntTSL 218.28■□□□□ 0.522e-8■■■■■ 30.6
LSM11P83369 RPL36-208ENST00000590786 907 ntTSL 217.36■□□□□ 0.372e-8■■■■■ 30.6
LSM11P83369 RPL36-207ENST00000582463 239 ntTSL 517.3■□□□□ 0.362e-8■■■■■ 30.6
LSM11P83369 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.65■□□□□ 0.262e-8■■■■■ 30.6
LSM11P83369 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.09■□□□□ 0.172e-8■■■■■ 30.6
LSM11P83369 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.132e-8■■■■■ 30.6
LSM11P83369 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.112e-8■■■■■ 30.6
LSM11P83369 PPOX-213ENST00000497522 816 ntTSL 414.09□□□□□ -0.152e-8■■■■■ 30.6
LSM11P83369 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.94□□□□□ -0.182e-8■■■■■ 30.6
LSM11P83369 PPOX-204ENST00000462866 473 ntTSL 5 BASIC11.79□□□□□ -0.522e-8■■■■■ 30.6
LSM11P83369 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.652e-8■■■■■ 30.6
LSM11P83369 PPOX-218ENST00000541818 1193 ntTSL 210.09□□□□□ -0.792e-8■■■■■ 30.6
LSM11P83369 PPOX-215ENST00000537523 734 ntTSL 39.53□□□□□ -0.882e-8■■■■■ 30.6
LSM11P83369 PPOX-206ENST00000466452 784 ntTSL 29.46□□□□□ -0.92e-8■■■■■ 30.6
LSM11P83369 PPOX-216ENST00000537829 728 ntTSL 29.29□□□□□ -0.922e-8■■■■■ 30.6
LSM11P83369 COL7A1-206ENST00000466591 778 ntTSL 215.25■□□□□ 0.037e-7■■■■■ 30.5
LSM11P83369 EIF4A1-205ENST00000577738 531 ntTSL 211.54□□□□□ -0.562e-8■■■■■ 30.5
LSM11P83369 CD2AP-202ENST00000463175 707 ntTSL 212.11□□□□□ -0.474e-7■■■■■ 30.5
LSM11P83369 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.762e-8■■■■■ 30.5
LSM11P83369 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.5■□□□□ 0.712e-8■■■■■ 30.5
LSM11P83369 PMPCA-204ENST00000444897 2316 ntTSL 215.42■□□□□ 0.062e-8■■■■■ 30.5
LSM11P83369 EMD-205ENST00000471965 800 ntTSL 220.27■□□□□ 0.845e-11■■■■■ 30.4
LSM11P83369 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.155e-11■■■■■ 30.4
LSM11P83369 CDK5RAP2-214ENST00000481266 970 ntTSL 517.82■□□□□ 0.446e-25■■■■■ 30.4
LSM11P83369 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.2■□□□□ 0.662e-9■■■■■ 30.3
LSM11P83369 AFF1-206ENST00000507468 1486 ntTSL 1 (best)18.85■□□□□ 0.611e-9■■■■■ 30.3
LSM11P83369 STX10-210ENST00000591843 1073 ntTSL 515.43■□□□□ 0.062e-9■■■■■ 30.3
LSM11P83369 AFF1-204ENST00000503477 1478 ntTSL 215.24■□□□□ 0.031e-9■■■■■ 30.3
LSM11P83369 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.02■□□□□ -02e-9■■■■■ 30.3
LSM11P83369 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -02e-9■■■■■ 30.3
LSM11P83369 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.61□□□□□ -0.072e-9■■■■■ 30.3
LSM11P83369 AFF1-205ENST00000504956 1668 ntTSL 214.18□□□□□ -0.141e-9■■■■■ 30.3
LSM11P83369 STX10-205ENST00000587318 704 ntTSL 211.76□□□□□ -0.532e-9■■■■■ 30.3
LSM11P83369 STX10-211ENST00000593126 713 ntTSL 310.96□□□□□ -0.652e-9■■■■■ 30.3
LSM11P83369 AFF1-202ENST00000395146 9285 ntAPPRIS ALT2 TSL 2 BASIC9.48□□□□□ -0.891e-9■■■■■ 30.3
LSM11P83369 AFF1-207ENST00000511442 463 ntTSL 37.05□□□□□ -1.281e-9■■■■■ 30.3
LSM11P83369 MCM9-208ENST00000505485 825 ntTSL 414.77□□□□□ -0.055e-7■■■■■ 30.3
LSM11P83369 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.365e-7■■■■■ 30.3
LSM11P83369 MCM9-203ENST00000368478 469 ntTSL 28.01□□□□□ -1.135e-7■■■■■ 30.3
LSM11P83369 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.635e-7■■■■■ 30.3
LSM11P83369 EIF4A1-235ENST00000584860 1109 ntTSL 312.09□□□□□ -0.472e-7■■■■■ 30.2
LSM11P83369 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.724e-8■■■■■ 30.2
LSM11P83369 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.17■□□□□ 0.664e-8■■■■■ 30.2
LSM11P83369 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.37■□□□□ 0.534e-8■■■■■ 30.2
LSM11P83369 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.194e-8■■■■■ 30.2
LSM11P83369 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.146e-7■■■■■ 30.2
LSM11P83369 HSDL1-208ENST00000619773 3059 nt8.09□□□□□ -1.116e-7■■■■■ 30.2
LSM11P83369 CAPN15-206ENST00000568402 540 ntTSL 412.57□□□□□ -0.43e-8■■■■■ 30.1
LSM11P83369 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.047e-11■■■■■ 30
LSM11P83369 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.437e-11■■■■■ 30
LSM11P83369 WNK1-211ENST00000540360 668 ntTSL 212.17□□□□□ -0.467e-11■■■■■ 30
LSM11P83369 WNK1-202ENST00000340908 11208 ntTSL 5 BASIC11.09□□□□□ -0.637e-11■■■■■ 30
LSM11P83369 WNK1-209ENST00000537687 11232 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.647e-11■■■■■ 30
LSM11P83369 WNK1-204ENST00000530271 11804 ntTSL 1 (best) BASIC9.93□□□□□ -0.827e-11■■■■■ 30
LSM11P83369 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.24■□□□□ 0.192e-8■■■■■ 30
LSM11P83369 TUSC3-213ENST00000515859 1627 ntTSL 522.53■■□□□ 1.29e-7■■■■■ 29.9
LSM11P83369 TUSC3-210ENST00000510836 1452 ntTSL 522.33■■□□□ 1.169e-7■■■■■ 29.9
LSM11P83369 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.13■□□□□ 0.659e-7■■■■■ 29.9
LSM11P83369 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.69e-7■■■■■ 29.9
LSM11P83369 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.69□□□□□ -0.069e-7■■■■■ 29.9
LSM11P83369 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.159e-7■■■■■ 29.9
LSM11P83369 TUSC3-206ENST00000507400 727 ntTSL 511.37□□□□□ -0.599e-7■■■■■ 29.9
LSM11P83369 TUSC3-212ENST00000511783 1203 ntTSL 511.3□□□□□ -0.69e-7■■■■■ 29.9
LSM11P83369 TUSC3-208ENST00000509177 493 ntTSL 29.36□□□□□ -0.919e-7■■■■■ 29.9
LSM11P83369 TUSC3-202ENST00000503191 731 ntTSL 37.74□□□□□ -1.179e-7■■■■■ 29.9
LSM11P83369 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.08■□□□□ 0.978e-13■■■■■ 29.9
LSM11P83369 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.65■□□□□ 0.96e-10■■■■■ 29.9
LSM11P83369 CSNK1G3-204ENST00000508708 920 ntTSL 220.4■□□□□ 0.868e-13■■■■■ 29.9
LSM11P83369 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.06■□□□□ 0.648e-13■■■■■ 29.9
LSM11P83369 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.478e-13■■■■■ 29.9
LSM11P83369 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC11.68□□□□□ -0.548e-12■■■■■ 29.9
LSM11P83369 LINC00470-211ENST00000584492 1281 ntTSL 1 (best) BASIC10.8□□□□□ -0.688e-12■■■■■ 29.9
LSM11P83369 LINC00470-203ENST00000577867 1211 ntTSL 1 (best)10.36□□□□□ -0.758e-12■■■■■ 29.9
LSM11P83369 LINC00470-206ENST00000581212 721 ntTSL 1 (best)10.29□□□□□ -0.768e-12■■■■■ 29.9
LSM11P83369 LINC00470-201ENST00000412816 2031 ntTSL 2 BASIC10□□□□□ -0.818e-12■■■■■ 29.9
LSM11P83369 LINC00470-209ENST00000582862 424 ntTSL 1 (best)9.99□□□□□ -0.818e-12■■■■■ 29.9
LSM11P83369 LINC00470-204ENST00000578835 674 ntTSL 29.04□□□□□ -0.968e-12■■■■■ 29.9
LSM11P83369 LINC00470-202ENST00000577403 251 ntTSL 1 (best)6.87□□□□□ -1.318e-12■■■■■ 29.9
LSM11P83369 LINC00470-207ENST00000581430 556 ntTSL 56.8□□□□□ -1.328e-12■■■■■ 29.9
LSM11P83369 EIF4A1-216ENST00000580888 710 ntTSL 216.34■□□□□ 0.212e-7■■■■■ 29.7
LSM11P83369 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.58■□□□□ 0.082e-7■■■■■ 29.7
LSM11P83369 EIF4A1-208ENST00000578476 573 ntTSL 214.83□□□□□ -0.042e-7■■■■■ 29.7
LSM11P83369 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.092e-7■■■■■ 29.7
LSM11P83369 EIF4A1-214ENST00000580461 909 ntTSL 211.32□□□□□ -0.62e-7■■■■■ 29.7
LSM11P83369 EIF4A1-213ENST00000579139 568 ntTSL 410.76□□□□□ -0.692e-7■■■■■ 29.7
LSM11P83369 AC016876.2-201ENST00000581621 4554 ntTSL 2 BASIC10.56□□□□□ -0.722e-7■■■■■ 29.7
LSM11P83369 EIF4A1-218ENST00000581544 1444 ntTSL 210.51□□□□□ -0.732e-7■■■■■ 29.7
LSM11P83369 SENP3-EIF4A1-201ENST00000614237 3519 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.782e-7■■■■■ 29.7
LSM11P83369 EIF4A1-236ENST00000584901 1021 ntTSL 210.14□□□□□ -0.792e-7■■■■■ 29.7
LSM11P83369 EIF4A1-226ENST00000582848 591 ntTSL 310.14□□□□□ -0.792e-7■■■■■ 29.7
LSM11P83369 EIF4A1-225ENST00000582746 1645 ntTSL 5 BASIC9.94□□□□□ -0.822e-7■■■■■ 29.7
LSM11P83369 EIF4A1-223ENST00000582169 552 ntTSL 49.75□□□□□ -0.852e-7■■■■■ 29.7
LSM11P83369 EIF4A1-229ENST00000583802 563 ntTSL 49.75□□□□□ -0.852e-7■■■■■ 29.7
LSM11P83369 EIF4A1-224ENST00000582213 560 ntTSL 49.08□□□□□ -0.962e-7■■■■■ 29.7
LSM11P83369 EIF4A1-230ENST00000583899 665 ntTSL 39.07□□□□□ -0.962e-7■■■■■ 29.7
Retrieved 100 of 11,495 protein–RNA pairs in 222.5 ms