RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 NISCHQ9Y2I1 1504 aa43.16■■■■■ 4.5
COL7A1-206ENST00000466591 CCDC180Q9P1Z9 1646 aa38.66■■■■□ 3.78
COL7A1-206ENST00000466591 ABCC9O60706 1549 aa38.54■■■■□ 3.76
COL7A1-206ENST00000466591 RB1CC1Q8TDY2 1594 aa36.78■■■■□ 3.48
COL7A1-206ENST00000466591 DCAF8L2P0C7V8 631 aa36.64■■■■□ 3.46
COL7A1-206ENST00000466591 NACADO15069 1562 aa36.52■■■■□ 3.44
COL7A1-206ENST00000466591 MYO15BQ96JP2 1530 aa35.98■■■■□ 3.35
COL7A1-206ENST00000466591 PABPN1Q86U42 306 aaKnown RBP eCLIP35.93■■■■□ 3.348e-7■■■■■ 31.4
COL7A1-206ENST00000466591 UNC13AQ9UPW8 1703 aa35.8■■■■□ 3.32
COL7A1-206ENST00000466591 ZCCHC6Q5VYS8 1495 aaKnown RBP35.8■■■■□ 3.32
COL7A1-206ENST00000466591 DNAJC5BQ9UF47 199 aa35.79■■■■□ 3.32
COL7A1-206ENST00000466591 DCAF1Q9Y4B6 1507 aa35.61■■■■□ 3.29
COL7A1-206ENST00000466591 BICRAQ9NZM4 1560 aa35.51■■■■□ 3.28
COL7A1-206ENST00000466591 SCRIBQ14160 1630 aa35.32■■■■□ 3.25
COL7A1-206ENST00000466591 SHROOM4Q9ULL8 1493 aa35.16■■■■□ 3.22
COL7A1-206ENST00000466591 CC2D2AQ9P2K1 1620 aa34.77■■■■□ 3.16
COL7A1-206ENST00000466591 EIF4G1Q04637 1599 aaKnown RBP34.74■■■■□ 3.15
COL7A1-206ENST00000466591 CECR2Q9BXF3 1484 aa34.69■■■■□ 3.14
COL7A1-206ENST00000466591 NCAPD3P42695 1498 aa33.65■■■□□ 2.98
COL7A1-206ENST00000466591 SMARCA4P51532 1647 aa33.64■■■□□ 2.98
COL7A1-206ENST00000466591 ATAD2BQ9ULI0 1458 aa33.61■■■□□ 2.97
COL7A1-206ENST00000466591 SMARCA2P51531 1590 aa33.6■■■□□ 2.97
COL7A1-206ENST00000466591 BAZ1AQ9NRL2 1556 aaPredicted RBP33.55■■■□□ 2.96
COL7A1-206ENST00000466591 HMGXB3Q12766 1538 aa33.46■■■□□ 2.95
COL7A1-206ENST00000466591 BAZ1BQ9UIG0 1483 aaKnown RBP33.4■■■□□ 2.94
COL7A1-206ENST00000466591 ERCC6Q03468 1493 aa33.38■■■□□ 2.93
COL7A1-206ENST00000466591 MROH2BQ7Z745 1585 aa33.25■■■□□ 2.91
COL7A1-206ENST00000466591 PEG3Q9GZU2 1588 aa33.23■■■□□ 2.91
COL7A1-206ENST00000466591 CUX2O14529 1486 aa33.1■■■□□ 2.89
COL7A1-206ENST00000466591 NESP48681 1621 aa33.09■■■□□ 2.89
COL7A1-206ENST00000466591 LAMC3Q9Y6N6 1575 aa32.94■■■□□ 2.86
COL7A1-206ENST00000466591 WIZO95785 1651 aa32.89■■■□□ 2.86
COL7A1-206ENST00000466591 PDS5BQ9NTI5 1447 aa32.81■■■□□ 2.84
COL7A1-206ENST00000466591 DNAJC5Q9H3Z4 198 aa32.8■■■□□ 2.84
COL7A1-206ENST00000466591 CADPSQ9ULU8 1353 aa32.7■■■□□ 2.83
COL7A1-206ENST00000466591 KIF21AQ7Z4S6 1674 aa32.69■■■□□ 2.82
COL7A1-206ENST00000466591 THOC2Q8NI27 1593 aaKnown RBP32.69■■■□□ 2.82
COL7A1-206ENST00000466591 RSF1Q96T23 1441 aaPredicted RBP32.64■■■□□ 2.82
COL7A1-206ENST00000466591 TOP2AP11388 1531 aaKnown RBP32.51■■■□□ 2.8
COL7A1-206ENST00000466591 MRC2Q9UBG0 1479 aa32.48■■■□□ 2.79
COL7A1-206ENST00000466591 CEP164Q9UPV0 1460 aa32.42■■■□□ 2.78
COL7A1-206ENST00000466591 FANCD2Q9BXW9 1451 aa32.36■■■□□ 2.77
COL7A1-206ENST00000466591 CFTRP13569 1480 aa32.33■■■□□ 2.77
COL7A1-206ENST00000466591 WDR62O43379 1518 aa32.32■■■□□ 2.76
COL7A1-206ENST00000466591 CCDC88BA6NC98 1476 aa32.12■■■□□ 2.73
COL7A1-206ENST00000466591 PRDM2Q13029 1718 aa32.06■■■□□ 2.72
COL7A1-206ENST00000466591 URB2Q14146 1524 aaKnown RBP32.01■■■□□ 2.72
COL7A1-206ENST00000466591 ABCC8Q09428 1581 aa31.76■■■□□ 2.67
COL7A1-206ENST00000466591 TOPBP1Q92547 1522 aa31.74■■■□□ 2.67
COL7A1-206ENST00000466591 IFT140Q96RY7 1462 aa31.73■■■□□ 2.67
COL7A1-206ENST00000466591 OSCARQ8IYS5 282 aa31.7■■■□□ 2.67
COL7A1-206ENST00000466591 TRIM41Q8WV44 630 aa31.68■■■□□ 2.66
COL7A1-206ENST00000466591 DNMBPQ6XZF7 1577 aa31.66■■■□□ 2.66
COL7A1-206ENST00000466591 ZNF608Q9ULD9 1512 aaPredicted RBP31.59■■■□□ 2.65
COL7A1-206ENST00000466591 SUPT5HO00267 1087 aaKnown RBP31.58■■■□□ 2.65
COL7A1-206ENST00000466591 EIF4G3O43432 1585 aaKnown RBP31.48■■■□□ 2.63
COL7A1-206ENST00000466591 POLA1P09884 1462 aaPredicted RBP31.42■■■□□ 2.62
COL7A1-206ENST00000466591 AQRO60306 1485 aaKnown RBP eCLIP31.38■■■□□ 2.61
COL7A1-206ENST00000466591 TARBP1Q13395 1621 aaKnown RBP31.38■■■□□ 2.61
COL7A1-206ENST00000466591 SOGA1O94964 1423 aa31.35■■■□□ 2.61
COL7A1-206ENST00000466591 FBLN2P98095 1184 aa31.34■■■□□ 2.61
COL7A1-206ENST00000466591 RAD54L2Q9Y4B4 1467 aa31.32■■■□□ 2.6
COL7A1-206ENST00000466591 FGD5Q6ZNL6 1462 aa31.29■■■□□ 2.6
COL7A1-206ENST00000466591 TDRD9Q8NDG6 1382 aaKnown RBP31.25■■■□□ 2.59
COL7A1-206ENST00000466591 CUX1P39880 1505 aa31.24■■■□□ 2.59
COL7A1-206ENST00000466591 CHD1O14646 1710 aa31.21■■■□□ 2.59
COL7A1-206ENST00000466591 RIMBP3CA6NJZ7 1639 aa31.18■■■□□ 2.58
COL7A1-206ENST00000466591 RIMBP3BA6NNM3 1639 aa31.18■■■□□ 2.58
COL7A1-206ENST00000466591 RIMBP3Q9UFD9 1639 aa31.18■■■□□ 2.58
COL7A1-206ENST00000466591 WDR97A6NE52 1622 aa31.14■■■□□ 2.58
COL7A1-206ENST00000466591 ARHGEF11O15085 1522 aa31.11■■■□□ 2.57
COL7A1-206ENST00000466591 SNAPC4Q5SXM2 1469 aa31.1■■■□□ 2.57
COL7A1-206ENST00000466591 CHMP7Q8WUX9 453 aaPredicted RBP31.08■■■□□ 2.57
COL7A1-206ENST00000466591 GRIN2BQ13224 1484 aa31.05■■■□□ 2.56
COL7A1-206ENST00000466591 MAGI1Q96QZ7 1491 aaPredicted RBP31.01■■■□□ 2.56
COL7A1-206ENST00000466591 CYB5RLQ6IPT4 315 aa30.97■■■□□ 2.55
COL7A1-206ENST00000466591 GAPVD1Q14C86 1478 aa30.96■■■□□ 2.55
COL7A1-206ENST00000466591 PBRM1Q86U86 1689 aa30.93■■■□□ 2.54
COL7A1-206ENST00000466591 SYNJ1O43426 1573 aa30.92■■■□□ 2.54
COL7A1-206ENST00000466591 WRNQ14191 1432 aaPredicted RBP eCLIP30.91■■■□□ 2.54
COL7A1-206ENST00000466591 SYNJ2O15056 1496 aa30.9■■■□□ 2.54
COL7A1-206ENST00000466591 ABCA10Q8WWZ4 1543 aa30.9■■■□□ 2.54
COL7A1-206ENST00000466591 ABCA5Q8WWZ7 1642 aa30.82■■■□□ 2.52
COL7A1-206ENST00000466591 TOP2BQ02880 1626 aa30.81■■■□□ 2.52
COL7A1-206ENST00000466591 BIVM-ERCC5R4GMW8 1640 aa30.8■■■□□ 2.52
COL7A1-206ENST00000466591 ARAP1Q96P48 1450 aa30.78■■■□□ 2.52
COL7A1-206ENST00000466591 CLASP1Q7Z460 1538 aa30.78■■■□□ 2.52
COL7A1-206ENST00000466591 TRHP20396 242 aaPredicted RBP30.69■■■□□ 2.5
COL7A1-206ENST00000466591 GRIN2AQ12879 1464 aa30.63■■■□□ 2.49
COL7A1-206ENST00000466591 ADAMTS12P58397 1594 aa30.62■■■□□ 2.49
COL7A1-206ENST00000466591 FHAD1B1AJZ9 1412 aa30.57■■■□□ 2.48
COL7A1-206ENST00000466591 ERICH3Q5RHP9 1530 aa30.55■■■□□ 2.48
COL7A1-206ENST00000466591 CEP170Q5SW79 1584 aa30.46■■■□□ 2.47
COL7A1-206ENST00000466591 NUP160Q12769 1436 aa30.45■■■□□ 2.46
COL7A1-206ENST00000466591 KIF27Q86VH2 1401 aa30.33■■■□□ 2.45
COL7A1-206ENST00000466591 ERCC6L2Q5T890 1561 aa30.32■■■□□ 2.44
COL7A1-206ENST00000466591 SHROOM2Q13796 1616 aa30.27■■■□□ 2.44
COL7A1-206ENST00000466591 PRG4Q92954 1404 aaPredicted RBP30.24■■■□□ 2.43
COL7A1-206ENST00000466591 JPH4Q96JJ6 628 aa30.23■■■□□ 2.43
COL7A1-206ENST00000466591 CUL7Q14999 1698 aa30.19■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 139.6 ms