RNA–Protein interactions for RNA: ENST00000345990.8

CSNK1G3-201, Transcript of casein kinase 1 gamma 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CSNK1G3, Length 4,635 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1G3-201ENST00000345990 NISCHQ9Y2I1 1504 aa27.43■■□□□ 1.98
CSNK1G3-201ENST00000345990 DCAF8L2P0C7V8 631 aa24.9■■□□□ 1.58
CSNK1G3-201ENST00000345990 SHROOM4Q9ULL8 1493 aa23.59■■□□□ 1.37
CSNK1G3-201ENST00000345990 CCDC180Q9P1Z9 1646 aa23.53■■□□□ 1.36
CSNK1G3-201ENST00000345990 SUPT5HO00267 1087 aaKnown RBP23.32■■□□□ 1.32
CSNK1G3-201ENST00000345990 ABCC9O60706 1549 aa23.12■■□□□ 1.29
CSNK1G3-201ENST00000345990 ZCCHC6Q5VYS8 1495 aaKnown RBP22.86■■□□□ 1.25
CSNK1G3-201ENST00000345990 DCAF1Q9Y4B6 1507 aa22.45■■□□□ 1.18
CSNK1G3-201ENST00000345990 NACADO15069 1562 aa22.43■■□□□ 1.18
CSNK1G3-201ENST00000345990 RB1CC1Q8TDY2 1594 aa22.41■■□□□ 1.18
CSNK1G3-201ENST00000345990 PABPN1Q86U42 306 aaKnown RBP eCLIP22.2■■□□□ 1.14
CSNK1G3-201ENST00000345990 SCRIBQ14160 1630 aa22.15■■□□□ 1.14
CSNK1G3-201ENST00000345990 MYO15BQ96JP2 1530 aa22.15■■□□□ 1.14
CSNK1G3-201ENST00000345990 TRIM41Q8WV44 630 aa22.02■■□□□ 1.12
CSNK1G3-201ENST00000345990 FAM9AQ8IZU1 332 aaPredicted RBP21.77■■□□□ 1.08
CSNK1G3-201ENST00000345990 APLP2Q06481 763 aa21.64■■□□□ 1.05
CSNK1G3-201ENST00000345990 CHIC1Q5VXU3 224 aa21.56■■□□□ 1.04
CSNK1G3-201ENST00000345990 EHMT2Q96KQ7 1210 aa21.54■■□□□ 1.04
CSNK1G3-201ENST00000345990 BAZ1AQ9NRL2 1556 aaPredicted RBP21.5■■□□□ 1.03
CSNK1G3-201ENST00000345990 RSF1Q96T23 1441 aaPredicted RBP21.44■■□□□ 1.02
CSNK1G3-201ENST00000345990 UBTFP17480 764 aaKnown RBP21.42■■□□□ 1.02
CSNK1G3-201ENST00000345990 BAZ1BQ9UIG0 1483 aaKnown RBP21.25■□□□□ 0.99
CSNK1G3-201ENST00000345990 CECR2Q9BXF3 1484 aa21.19■□□□□ 0.98
CSNK1G3-201ENST00000345990 SMARCA2P51531 1590 aa21.15■□□□□ 0.98
CSNK1G3-201ENST00000345990 RANGAP1P46060 587 aaPredicted RBP21.05■□□□□ 0.96
CSNK1G3-201ENST00000345990 MROH2BQ7Z745 1585 aa21.04■□□□□ 0.96
CSNK1G3-201ENST00000345990 ATP1B4Q9UN42 357 aaPredicted RBP20.94■□□□□ 0.94
CSNK1G3-201ENST00000345990 SMARCA4P51532 1647 aa20.91■□□□□ 0.94
CSNK1G3-201ENST00000345990 CSRNP3Q8WYN3 585 aa20.9■□□□□ 0.94
CSNK1G3-201ENST00000345990 TOP2AP11388 1531 aaKnown RBP20.88■□□□□ 0.93
CSNK1G3-201ENST00000345990 LOC105371045A0A1W2PR82 267 aa20.84■□□□□ 0.93
CSNK1G3-201ENST00000345990 ATAD2BQ9ULI0 1458 aa20.83■□□□□ 0.93
CSNK1G3-201ENST00000345990 EEA1Q15075 1411 aa20.8■□□□□ 0.92
CSNK1G3-201ENST00000345990 WRNQ14191 1432 aaPredicted RBP eCLIP20.77■□□□□ 0.91
CSNK1G3-201ENST00000345990 CCDC88BA6NC98 1476 aa20.74■□□□□ 0.91
CSNK1G3-201ENST00000345990 PCGF6Q9BYE7 350 aa20.73■□□□□ 0.91
CSNK1G3-201ENST00000345990 WIZO95785 1651 aa20.72■□□□□ 0.91
CSNK1G3-201ENST00000345990 TTBK1Q5TCY1 1321 aaPredicted RBP20.7■□□□□ 0.91
CSNK1G3-201ENST00000345990 NCAPD3P42695 1498 aa20.65■□□□□ 0.9
CSNK1G3-201ENST00000345990 TRIM26Q12899 539 aaPredicted RBP20.65■□□□□ 0.9
CSNK1G3-201ENST00000345990 ZEB1P37275 1124 aaPredicted RBP20.65■□□□□ 0.9
CSNK1G3-201ENST00000345990 EIF4G1Q04637 1599 aaKnown RBP20.63■□□□□ 0.89
CSNK1G3-201ENST00000345990 PDS5BQ9NTI5 1447 aa20.63■□□□□ 0.89
CSNK1G3-201ENST00000345990 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.58■□□□□ 0.89
CSNK1G3-201ENST00000345990 HNRNPUL2Q1KMD3 747 aaKnown RBP20.58■□□□□ 0.89
CSNK1G3-201ENST00000345990 CADPSQ9ULU8 1353 aa20.58■□□□□ 0.88
CSNK1G3-201ENST00000345990 BICRAQ9NZM4 1560 aa20.56■□□□□ 0.88
CSNK1G3-201ENST00000345990 KIF27Q86VH2 1401 aa20.54■□□□□ 0.88
CSNK1G3-201ENST00000345990 ERCC6Q03468 1493 aa20.54■□□□□ 0.88
CSNK1G3-201ENST00000345990 FBLN2P98095 1184 aa20.54■□□□□ 0.88
CSNK1G3-201ENST00000345990 HMGXB3Q12766 1538 aa20.45■□□□□ 0.86
CSNK1G3-201ENST00000345990 CCER1Q8TC90 406 aaPredicted RBP20.43■□□□□ 0.86
CSNK1G3-201ENST00000345990 GOLGA3Q08378 1498 aa20.41■□□□□ 0.86
CSNK1G3-201ENST00000345990 ABCC8Q09428 1581 aa20.38■□□□□ 0.85
CSNK1G3-201ENST00000345990 CEP164Q9UPV0 1460 aa20.37■□□□□ 0.85
CSNK1G3-201ENST00000345990 PPARGC1BQ86YN6 1023 aaKnown RBP20.34■□□□□ 0.85
CSNK1G3-201ENST00000345990 CHMP7Q8WUX9 453 aaPredicted RBP20.33■□□□□ 0.85
CSNK1G3-201ENST00000345990 CDK11AQ9UQ88 783 aaPredicted RBP20.33■□□□□ 0.84
CSNK1G3-201ENST00000345990 UNC13AQ9UPW8 1703 aa20.33■□□□□ 0.84
CSNK1G3-201ENST00000345990 CC2D2AQ9P2K1 1620 aa20.28■□□□□ 0.84
CSNK1G3-201ENST00000345990 TNIKQ9UKE5 1360 aa20.26■□□□□ 0.83
CSNK1G3-201ENST00000345990 PEG3Q9GZU2 1588 aa20.25■□□□□ 0.83
CSNK1G3-201ENST00000345990 CUX2O14529 1486 aa20.25■□□□□ 0.83
CSNK1G3-201ENST00000345990 FANCD2Q9BXW9 1451 aa20.25■□□□□ 0.83
CSNK1G3-201ENST00000345990 CLIP1P30622 1438 aa20.22■□□□□ 0.83
CSNK1G3-201ENST00000345990 SOGA1O94964 1423 aa20.21■□□□□ 0.83
CSNK1G3-201ENST00000345990 P3H3Q8IVL6 736 aa20.18■□□□□ 0.82
CSNK1G3-201ENST00000345990 CFTRP13569 1480 aa20.17■□□□□ 0.82
CSNK1G3-201ENST00000345990 CARMIL1Q5VZK9 1371 aa20.16■□□□□ 0.82
CSNK1G3-201ENST00000345990 ITGAEP38570 1179 aa20.15■□□□□ 0.82
CSNK1G3-201ENST00000345990 MYT1LQ9UL68 1186 aa20.14■□□□□ 0.81
CSNK1G3-201ENST00000345990 FAM50AQ14320 339 aaKnown RBP20.11■□□□□ 0.81
CSNK1G3-201ENST00000345990 CEP162Q5TB80 1403 aa20.1■□□□□ 0.81
CSNK1G3-201ENST00000345990 NPM1P06748 294 aaKnown RBP eCLIP20.06■□□□□ 0.8
CSNK1G3-201ENST00000345990 FHAD1B1AJZ9 1412 aa19.97■□□□□ 0.79
CSNK1G3-201ENST00000345990 TDRD9Q8NDG6 1382 aaKnown RBP19.96■□□□□ 0.79
CSNK1G3-201ENST00000345990 LAMC3Q9Y6N6 1575 aa19.95■□□□□ 0.78
CSNK1G3-201ENST00000345990 RAPGEF2Q9Y4G8 1499 aa19.93■□□□□ 0.78
CSNK1G3-201ENST00000345990 MTUS2Q5JR59 1369 aa19.93■□□□□ 0.78
CSNK1G3-201ENST00000345990 FGD5Q6ZNL6 1462 aa19.92■□□□□ 0.78
CSNK1G3-201ENST00000345990 MRC2Q9UBG0 1479 aa19.87■□□□□ 0.77
CSNK1G3-201ENST00000345990 HRCP23327 699 aa19.86■□□□□ 0.77
CSNK1G3-201ENST00000345990 CARMIL2Q6F5E8 1435 aa19.86■□□□□ 0.77
CSNK1G3-201ENST00000345990 ACIN1Q9UKV3 1341 aaKnown RBP19.85■□□□□ 0.77
CSNK1G3-201ENST00000345990 ARID3CA6NKF2 412 aa19.83■□□□□ 0.76
CSNK1G3-201ENST00000345990 PLEKHD1A6NEE1 506 aa19.82■□□□□ 0.76
CSNK1G3-201ENST00000345990 TRIM52Q96A61 297 aa19.81■□□□□ 0.76
CSNK1G3-201ENST00000345990 TOP2BQ02880 1626 aa19.8■□□□□ 0.76
CSNK1G3-201ENST00000345990 GAPVD1Q14C86 1478 aa19.8■□□□□ 0.76
CSNK1G3-201ENST00000345990 NESP48681 1621 aa19.77■□□□□ 0.76
CSNK1G3-201ENST00000345990 DNMBPQ6XZF7 1577 aa19.77■□□□□ 0.76
CSNK1G3-201ENST00000345990 FMN1Q68DA7 1419 aa19.77■□□□□ 0.76
CSNK1G3-201ENST00000345990 VPS8Q8N3P4 1428 aa19.76■□□□□ 0.75
CSNK1G3-201ENST00000345990 IFT140Q96RY7 1462 aa19.75■□□□□ 0.75
CSNK1G3-201ENST00000345990 TOPBP1Q92547 1522 aa19.75■□□□□ 0.75
CSNK1G3-201ENST00000345990 ZNF777Q9ULD5 760 aaPredicted RBP19.74■□□□□ 0.75
CSNK1G3-201ENST00000345990 IGF1RP08069 1367 aa19.74■□□□□ 0.75
CSNK1G3-201ENST00000345990 SYNJ1O43426 1573 aa19.71■□□□□ 0.75
CSNK1G3-201ENST00000345990 RAD54L2Q9Y4B4 1467 aa19.69■□□□□ 0.74
CSNK1G3-201ENST00000345990 CUX1P39880 1505 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms