Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SUN1-235ENST00000497943 2824 ntTSL 217.8■□□□□ 0.442e-7■■□□□ 13
YBX3P16989 INTS11-233ENST00000527098 2004 ntTSL 217.65■□□□□ 0.422e-7■■□□□ 13
YBX3P16989 GGPS1-203ENST00000391855 1407 ntTSL 2 BASIC16.48■□□□□ 0.232e-7■■□□□ 13
YBX3P16989 SUN1-222ENST00000457861 2975 ntTSL 216.12■□□□□ 0.172e-7■■□□□ 13
YBX3P16989 INTS11-246ENST00000534345 485 ntTSL 415.44■□□□□ 0.062e-7■■□□□ 13
YBX3P16989 COPB2-208ENST00000512153 629 ntTSL 415.36■□□□□ 0.052e-7■■□□□ 13
YBX3P16989 GDI2-209ENST00000609712 622 ntTSL 314.34□□□□□ -0.112e-7■■□□□ 13
YBX3P16989 PPP1R2-207ENST00000625807 245 ntTSL 5 BASIC14.34□□□□□ -0.112e-7■■□□□ 13
YBX3P16989 GGPS1-202ENST00000358966 2740 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.132e-7■■□□□ 13
YBX3P16989 GGPS1-201ENST00000282841 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.42e-7■■□□□ 13
YBX3P16989 GGPS1-204ENST00000471812 850 ntTSL 212.57□□□□□ -0.42e-7■■□□□ 13
YBX3P16989 KIFAP3-201ENST00000361580 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.482e-7■■□□□ 13
YBX3P16989 SUN1-213ENST00000433212 3474 ntTSL 511.74□□□□□ -0.532e-7■■□□□ 13
YBX3P16989 SUN1-206ENST00000413171 4488 ntTSL 511.72□□□□□ -0.532e-7■■□□□ 13
YBX3P16989 KIFAP3-206ENST00000538366 3159 ntTSL 2 BASIC11.45□□□□□ -0.582e-7■■□□□ 13
YBX3P16989 SUN1-202ENST00000389574 3812 ntAPPRIS P3 TSL 2 BASIC11.08□□□□□ -0.642e-7■■□□□ 13
YBX3P16989 SUN1-212ENST00000429178 3701 ntTSL 1 (best)10.89□□□□□ -0.672e-7■■□□□ 13
YBX3P16989 DMXL2-201ENST00000251076 10672 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.682e-7■■□□□ 13
YBX3P16989 TMBIM4-209ENST00000544599 2240 ntTSL 1 (best) BASIC10.52□□□□□ -0.732e-7■■□□□ 13
YBX3P16989 SUN1-229ENST00000475971 4038 ntTSL 1 (best)10.19□□□□□ -0.782e-7■■□□□ 13
YBX3P16989 SUN1-210ENST00000425407 3868 ntAPPRIS P3 TSL 5 BASIC10.15□□□□□ -0.782e-7■■□□□ 13
YBX3P16989 SUN1-205ENST00000405266 4062 ntTSL 5 BASIC9.94□□□□□ -0.822e-7■■□□□ 13
YBX3P16989 SUN1-219ENST00000452783 3717 ntTSL 2 BASIC9.9□□□□□ -0.832e-7■■□□□ 13
YBX3P16989 SUN1-203ENST00000401592 3953 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.832e-7■■□□□ 13
YBX3P16989 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC8.41□□□□□ -1.062e-7■■□□□ 13
YBX3P16989 HAT1-202ENST00000392584 3609 ntTSL 28.39□□□□□ -1.072e-7■■□□□ 13
YBX3P16989 GGPS1-208ENST00000497327 868 ntTSL 37.83□□□□□ -1.162e-7■■□□□ 13
YBX3P16989 TMBIM4-206ENST00000538217 552 ntTSL 27.58□□□□□ -1.22e-7■■□□□ 13
YBX3P16989 IPO7-203ENST00000528833 355 ntTSL 57.54□□□□□ -1.25e-34■■□□□ 13
YBX3P16989 COPB2-213ENST00000515006 548 ntTSL 56.92□□□□□ -1.32e-7■■□□□ 13
YBX3P16989 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.622e-7■■□□□ 13
YBX3P16989 GSPT1-205ENST00000562794 501 ntTSL 34.4□□□□□ -1.712e-7■■□□□ 13
YBX3P16989 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.712e-7■■□□□ 13
YBX3P16989 GSPT1-207ENST00000564790 491 ntTSL 34.38□□□□□ -1.712e-7■■□□□ 13
YBX3P16989 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.18□□□□□ -1.742e-7■■□□□ 13
YBX3P16989 HSPA8-214ENST00000531063 578 ntTSL 26.59□□□□□ -1.351e-15■■□□□ 13
YBX3P16989 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.51■□□□□ 0.233e-7■■□□□ 13
YBX3P16989 PPP2R5C-201ENST00000328724 4045 ntTSL 2 BASIC10.83□□□□□ -0.683e-7■■□□□ 13
YBX3P16989 RFC4-212ENST00000479307 1043 ntTSL 26.82□□□□□ -1.329e-8■■□□□ 13
YBX3P16989 RFC4-211ENST00000460408 628 ntTSL 26.19□□□□□ -1.429e-8■■□□□ 13
YBX3P16989 RPS17-203ENST00000559273 580 ntTSL 222.12■■□□□ 1.135e-87■■□□□ 13
YBX3P16989 HSPA4-204ENST00000615899 2204 ntTSL 5 BASIC14.5□□□□□ -0.097e-7■■□□□ 13
YBX3P16989 SMG7-209ENST00000495321 556 ntTSL 38.86□□□□□ -0.994e-14■■□□□ 13
YBX3P16989 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.32■□□□□ 0.524e-7■■□□□ 13
YBX3P16989 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.174e-7■■□□□ 13
YBX3P16989 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.31■□□□□ 0.044e-7■■□□□ 13
YBX3P16989 RPLP0-204ENST00000546564 844 ntTSL 216.84■□□□□ 0.292e-88■■□□□ 13
YBX3P16989 RPLP0-213ENST00000548568 1127 ntTSL 1 (best)12.63□□□□□ -0.392e-88■■□□□ 13
YBX3P16989 CDK12-209ENST00000584632 4165 ntTSL 513.61□□□□□ -0.235e-7■■□□□ 13
YBX3P16989 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.245e-7■■□□□ 13
YBX3P16989 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.265e-7■■□□□ 13
YBX3P16989 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.914e-8■■□□□ 13
YBX3P16989 MANF-202ENST00000470900 1509 ntTSL 231.7■■■□□ 2.674e-8■■□□□ 13
YBX3P16989 MANF-201ENST00000446668 846 ntTSL 327.6■■■□□ 2.014e-8■■□□□ 13
YBX3P16989 MANF-203ENST00000482262 436 ntTSL 27.6□□□□□ -1.194e-8■■□□□ 13
YBX3P16989 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.913e-17■■□□□ 13
YBX3P16989 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.73e-17■■□□□ 13
YBX3P16989 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.553e-17■■□□□ 13
YBX3P16989 TYMS-205ENST00000581920 886 ntTSL 511.32□□□□□ -0.62e-8■■□□□ 13
YBX3P16989 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.391e-7■■□□□ 13
YBX3P16989 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.3■□□□□ 0.361e-7■■□□□ 13
YBX3P16989 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.214e-9■■□□□ 13
YBX3P16989 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.74e-6■■□□□ 13
YBX3P16989 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26.4■■□□□ 1.824e-6■■□□□ 13
YBX3P16989 MSANTD3-TMEFF1-201ENST00000502978 2069 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.794e-6■■□□□ 13
YBX3P16989 MSANTD3-205ENST00000489377 1991 ntTSL 29.94□□□□□ -0.824e-6■■□□□ 13
YBX3P16989 MSANTD3-206ENST00000613183 1755 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.14e-6■■□□□ 13
YBX3P16989 MICU1-206ENST00000489666 579 ntTSL 411.27□□□□□ -0.616e-7■■□□□ 13
YBX3P16989 MICU1-204ENST00000418483 1212 ntTSL 2 BASIC11.09□□□□□ -0.636e-7■■□□□ 13
YBX3P16989 MICU1-203ENST00000398763 1224 ntTSL 2 BASIC10.17□□□□□ -0.786e-7■■□□□ 13
YBX3P16989 SORL1-205ENST00000527649 1765 ntTSL 216.3■□□□□ 0.27e-12■■□□□ 13
YBX3P16989 SF3A2-202ENST00000586396 543 ntAPPRIS ALT2 TSL 321.1■□□□□ 0.977e-10■■□□□ 13
YBX3P16989 GLE1-202ENST00000372770 2218 ntTSL 1 (best) BASIC11.97□□□□□ -0.494e-9■■□□□ 13
YBX3P16989 GLE1-201ENST00000309971 3321 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.854e-9■■□□□ 13
YBX3P16989 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.97■□□□□ 0.631e-7■■□□□ 13
YBX3P16989 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC26.31■■□□□ 1.85e-7■■□□□ 13
YBX3P16989 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.785e-7■■□□□ 13
YBX3P16989 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC25.78■■□□□ 1.725e-7■■□□□ 13
YBX3P16989 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.695e-7■■□□□ 13
YBX3P16989 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC25.03■■□□□ 1.65e-7■■□□□ 13
YBX3P16989 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC23.61■■□□□ 1.375e-7■■□□□ 13
YBX3P16989 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC22.68■■□□□ 1.225e-7■■□□□ 13
YBX3P16989 AL132780.3-201ENST00000555074 835 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.255e-7■■□□□ 13
YBX3P16989 HAUS4-213ENST00000554446 1129 ntTSL 511.4□□□□□ -0.585e-7■■□□□ 13
YBX3P16989 PDLIM5-216ENST00000511767 463 ntTSL 521.17■□□□□ 0.981e-7■■□□□ 13
YBX3P16989 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.21e-9■■□□□ 13
YBX3P16989 AP2S1-205ENST00000597421 554 ntTSL 228.21■■■□□ 2.113e-9■■□□□ 13
YBX3P16989 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.481e-6■■□□□ 13
YBX3P16989 GDI2-208ENST00000608581 634 ntTSL 312.22□□□□□ -0.453e-8■■□□□ 13
YBX3P16989 TUSC3-210ENST00000510836 1452 ntTSL 532.18■■■□□ 2.745e-6■■□□□ 13
YBX3P16989 TUSC3-213ENST00000515859 1627 ntTSL 529.73■■■□□ 2.355e-6■■□□□ 13
YBX3P16989 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC27.22■■□□□ 1.955e-6■■□□□ 13
YBX3P16989 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC26.42■■□□□ 1.825e-6■■□□□ 13
YBX3P16989 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC22.24■■□□□ 1.155e-6■■□□□ 13
YBX3P16989 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 05e-6■■□□□ 13
YBX3P16989 TUSC3-208ENST00000509177 493 ntTSL 214.95□□□□□ -0.025e-6■■□□□ 13
YBX3P16989 TUSC3-212ENST00000511783 1203 ntTSL 58.03□□□□□ -1.125e-6■■□□□ 13
YBX3P16989 TUSC3-206ENST00000507400 727 ntTSL 57.33□□□□□ -1.245e-6■■□□□ 13
YBX3P16989 TUSC3-202ENST00000503191 731 ntTSL 36.28□□□□□ -1.45e-6■■□□□ 13
YBX3P16989 GPAT4-210ENST00000521806 873 ntTSL 514.66□□□□□ -0.069e-8■■□□□ 13
Retrieved 100 of 29,075 protein–RNA pairs in 229.4 ms