RNA–Protein interactions for RNA: ENST00000460408.5

RFC4-211, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 628 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-211ENST00000460408 AEBP2Q6ZN18 517 aaPredicted RBP22.21■■□□□ 1.15
RFC4-211ENST00000460408 CHIC1Q5VXU3 224 aa21■□□□□ 0.95
RFC4-211ENST00000460408 SENP3Q9H4L4 574 aaPredicted RBP18.96■□□□□ 0.63
RFC4-211ENST00000460408 PHF23Q9BUL5 403 aaPredicted RBP18.7■□□□□ 0.58
RFC4-211ENST00000460408 FOXD1Q16676 465 aa17.68■□□□□ 0.42
RFC4-211ENST00000460408 PLPPR3Q6T4P5 718 aa16.72■□□□□ 0.27
RFC4-211ENST00000460408 MSH5O43196 834 aa16.6■□□□□ 0.25
RFC4-211ENST00000460408 PIAS4Q8N2W9 510 aaPredicted RBP16.47■□□□□ 0.23
RFC4-211ENST00000460408 PPP6R1Q9UPN7 881 aa16.45■□□□□ 0.22
RFC4-211ENST00000460408 ADRA2BP18089 450 aa16.37■□□□□ 0.21
RFC4-211ENST00000460408 POTEDQ86YR6 584 aa16.37■□□□□ 0.21
RFC4-211ENST00000460408 MAPK8IP2Q13387 824 aaPredicted RBP15.08■□□□□ 0
RFC4-211ENST00000460408 DMRT2Q9Y5R5 561 aa15.03■□□□□ -0
RFC4-211ENST00000460408 SCAF1Q9H7N4 1312 aaKnown RBP15.01□□□□□ -0.01
RFC4-211ENST00000460408 PPP4R3CPQ6ZMV5 832 aa14.64□□□□□ -0.07
RFC4-211ENST00000460408 HOXD11P31277 338 aaPredicted RBP14.45□□□□□ -0.1
RFC4-211ENST00000460408 CNKSR2Q8WXI2 1034 aa14.4□□□□□ -0.1
RFC4-211ENST00000460408 DCAF8L1A6NGE4 600 aa14.35□□□□□ -0.11
RFC4-211ENST00000460408 RNF216Q9NWF9 866 aaPredicted RBP14.31□□□□□ -0.12
RFC4-211ENST00000460408 CACNB1Q02641 598 aaPredicted RBP14.28□□□□□ -0.12
RFC4-211ENST00000460408 RNF39Q9H2S5 420 aa14.16□□□□□ -0.14
RFC4-211ENST00000460408 NCBP3Q53F19 620 aaKnown RBP14.05□□□□□ -0.16
RFC4-211ENST00000460408 DNAJC5BQ9UF47 199 aa14.01□□□□□ -0.17
RFC4-211ENST00000460408 C1QBPQ07021 282 aaKnown RBP13.95□□□□□ -0.18
RFC4-211ENST00000460408 NPM3O75607 178 aaKnown RBP13.84□□□□□ -0.19
RFC4-211ENST00000460408 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.72□□□□□ -0.219e-6■□□□□ 10.7
RFC4-211ENST00000460408 KCNA4P22459 653 aa13.46□□□□□ -0.25
RFC4-211ENST00000460408 U3KPZ7 1027 aaPredicted RBP13.44□□□□□ -0.26
RFC4-211ENST00000460408 SPINK5Q9NQ38 1064 aaPredicted RBP13.26□□□□□ -0.29
RFC4-211ENST00000460408 SLC4A2P04920 1241 aa13.25□□□□□ -0.29
RFC4-211ENST00000460408 CAPN15O75808 1086 aa13.23□□□□□ -0.29
RFC4-211ENST00000460408 DSG3P32926 999 aa13.22□□□□□ -0.29
RFC4-211ENST00000460408 APLP2Q06481 763 aa13.07□□□□□ -0.32
RFC4-211ENST00000460408 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.03□□□□□ -0.32
RFC4-211ENST00000460408 HNRNPUL2Q1KMD3 747 aaKnown RBP13.03□□□□□ -0.32
RFC4-211ENST00000460408 ZNF219Q9P2Y4 722 aaPredicted RBP13□□□□□ -0.33
RFC4-211ENST00000460408 TRHP20396 242 aaPredicted RBP12.99□□□□□ -0.33
RFC4-211ENST00000460408 SAMD1Q6SPF0 538 aaPredicted RBP12.95□□□□□ -0.34
RFC4-211ENST00000460408 ABCB7O75027 752 aa12.91□□□□□ -0.34
RFC4-211ENST00000460408 MYCNP04198 464 aaPredicted RBP12.81□□□□□ -0.36
RFC4-211ENST00000460408 POTEHQ6S545 545 aa12.81□□□□□ -0.36
RFC4-211ENST00000460408 SLC4A1APQ9BWU0 796 aaKnown RBP12.69□□□□□ -0.38
RFC4-211ENST00000460408 POLA2Q14181 598 aa12.63□□□□□ -0.39
RFC4-211ENST00000460408 RBM42Q9BTD8 480 aaKnown RBP12.62□□□□□ -0.39
RFC4-211ENST00000460408 FOXD4L1Q9NU39 408 aa12.62□□□□□ -0.39
RFC4-211ENST00000460408 ATF5Q9Y2D1 282 aaPredicted RBP12.51□□□□□ -0.41
RFC4-211ENST00000460408 ZBTB22O15209 634 aa12.39□□□□□ -0.43
RFC4-211ENST00000460408 ZBTB12Q9Y330 459 aaPredicted RBP12.39□□□□□ -0.43
RFC4-211ENST00000460408 CHRDL2Q6WN34 429 aa12.37□□□□□ -0.43
RFC4-211ENST00000460408 AKT1S1Q96B36 256 aa12.31□□□□□ -0.44
RFC4-211ENST00000460408 ATXN8OSP0DMR3 200 aa12.27□□□□□ -0.45
RFC4-211ENST00000460408 OSCARQ8IYS5 282 aa12.23□□□□□ -0.45
RFC4-211ENST00000460408 REM2Q8IYK8 340 aaPredicted RBP12.18□□□□□ -0.46
RFC4-211ENST00000460408 PIP4P2Q8N4L2 257 aa12.05□□□□□ -0.48
RFC4-211ENST00000460408 PITPNM1O00562 1244 aa12.04□□□□□ -0.48
RFC4-211ENST00000460408 FBLN2P98095 1184 aa12.02□□□□□ -0.49
RFC4-211ENST00000460408 SPDYE2BA6NHP3 402 aa12□□□□□ -0.49
RFC4-211ENST00000460408 SPDYE6P0CI01 402 aa12□□□□□ -0.49
RFC4-211ENST00000460408 SPDYE2Q495Y8 402 aa12□□□□□ -0.49
RFC4-211ENST00000460408 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.49
RFC4-211ENST00000460408 SP7Q8TDD2 431 aaPredicted RBP11.96□□□□□ -0.49
RFC4-211ENST00000460408 MKRN4PQ13434 485 aaPredicted RBP11.94□□□□□ -0.5
RFC4-211ENST00000460408 HAX1O00165 279 aa11.84□□□□□ -0.51
RFC4-211ENST00000460408 SSUH2Q9Y2M2 353 aa11.84□□□□□ -0.51
RFC4-211ENST00000460408 ZNF692Q9BU19 519 aaPredicted RBP11.82□□□□□ -0.52
RFC4-211ENST00000460408 SPDYE1Q8NFV5 336 aaPredicted RBP11.81□□□□□ -0.52
RFC4-211ENST00000460408 CLEC11AQ9Y240 323 aa11.76□□□□□ -0.53
RFC4-211ENST00000460408 PRKAR2AP13861 404 aaKnown RBP11.72□□□□□ -0.53
RFC4-211ENST00000460408 CSRNP3Q8WYN3 585 aa11.72□□□□□ -0.53
RFC4-211ENST00000460408 EVX2Q03828 476 aa11.7□□□□□ -0.54
RFC4-211ENST00000460408 PABPN1Q86U42 306 aaKnown RBP eCLIP11.64□□□□□ -0.55
RFC4-211ENST00000460408 C19orf67A6NJJ6 358 aa11.61□□□□□ -0.55
RFC4-211ENST00000460408 PRR29P0C7W0 189 aa11.57□□□□□ -0.56
RFC4-211ENST00000460408 CHADLQ6NUI6 762 aa11.56□□□□□ -0.56
RFC4-211ENST00000460408 EHMT2Q96KQ7 1210 aa11.46□□□□□ -0.57
RFC4-211ENST00000460408 GABBR2O75899 941 aa11.45□□□□□ -0.58
RFC4-211ENST00000460408 FARP1Q9Y4F1 1045 aaPredicted RBP11.4□□□□□ -0.58
RFC4-211ENST00000460408 CD44P16070 742 aaKnown RBP11.35□□□□□ -0.59
RFC4-211ENST00000460408 STAG3Q9UJ98 1225 aa11.32□□□□□ -0.6
RFC4-211ENST00000460408 SPDYE4A6NLX3 237 aa11.3□□□□□ -0.6
RFC4-211ENST00000460408 CREBZFQ9NS37 354 aa11.28□□□□□ -0.6
RFC4-211ENST00000460408 CLCN6P51797 869 aa11.27□□□□□ -0.61
RFC4-211ENST00000460408 POTEIP0CG38 1075 aa11.21□□□□□ -0.61
RFC4-211ENST00000460408 LHX8Q68G74 356 aa11.21□□□□□ -0.61
RFC4-211ENST00000460408 ZNF579Q8NAF0 562 aaKnown RBP11.19□□□□□ -0.62
RFC4-211ENST00000460408 ZRANB1Q9UGI0 708 aa11.17□□□□□ -0.62
RFC4-211ENST00000460408 MNX1P50219 401 aaPredicted RBP11.09□□□□□ -0.63
RFC4-211ENST00000460408 DCBLD2Q96PD2 775 aa11.09□□□□□ -0.63
RFC4-211ENST00000460408 PROM2Q8N271 834 aa11.07□□□□□ -0.64
RFC4-211ENST00000460408 NPM1P06748 294 aaKnown RBP eCLIP11.06□□□□□ -0.64
RFC4-211ENST00000460408 PAK3O75914 559 aaPredicted RBP11.05□□□□□ -0.64
RFC4-211ENST00000460408 GALR2O43603 387 aaPredicted RBP11.04□□□□□ -0.64
RFC4-211ENST00000460408 PHF12Q96QT6 1004 aa11□□□□□ -0.65
RFC4-211ENST00000460408 MS4A3Q96HJ5 214 aa10.86□□□□□ -0.67
RFC4-211ENST00000460408 PELP1Q8IZL8 1130 aaKnown RBP10.84□□□□□ -0.67
RFC4-211ENST00000460408 POTEB2H3BUK9 544 aa10.83□□□□□ -0.68
RFC4-211ENST00000460408 ASTLQ6HA08 431 aaPredicted RBP10.83□□□□□ -0.68
RFC4-211ENST00000460408 TSPYL2Q9H2G4 693 aaPredicted RBP10.83□□□□□ -0.68
RFC4-211ENST00000460408 CCDC61Q9Y6R9 512 aa10.83□□□□□ -0.68
RFC4-211ENST00000460408 OTUD5Q96G74 571 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms