RNA–Protein interactions for RNA: ENST00000479307.5

RFC4-212, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,043 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-212ENST00000479307 AEBP2Q6ZN18 517 aaPredicted RBP23.24■■□□□ 1.31
RFC4-212ENST00000479307 CHIC1Q5VXU3 224 aa22.52■■□□□ 1.2
RFC4-212ENST00000479307 SENP3Q9H4L4 574 aaPredicted RBP19.84■□□□□ 0.77
RFC4-212ENST00000479307 PHF23Q9BUL5 403 aaPredicted RBP19.79■□□□□ 0.76
RFC4-212ENST00000479307 FOXD1Q16676 465 aa18.57■□□□□ 0.56
RFC4-212ENST00000479307 PLPPR3Q6T4P5 718 aa18.49■□□□□ 0.55
RFC4-212ENST00000479307 POTEDQ86YR6 584 aa17.63■□□□□ 0.41
RFC4-212ENST00000479307 MSH5O43196 834 aa17.45■□□□□ 0.38
RFC4-212ENST00000479307 ADRA2BP18089 450 aa17.32■□□□□ 0.36
RFC4-212ENST00000479307 PPP6R1Q9UPN7 881 aa17.31■□□□□ 0.36
RFC4-212ENST00000479307 PIAS4Q8N2W9 510 aaPredicted RBP17.3■□□□□ 0.36
RFC4-212ENST00000479307 KCNA4P22459 653 aa16.32■□□□□ 0.2
RFC4-212ENST00000479307 PPP4R3CPQ6ZMV5 832 aa16.3■□□□□ 0.2
RFC4-212ENST00000479307 NCBP3Q53F19 620 aaKnown RBP16.04■□□□□ 0.16
RFC4-212ENST00000479307 SCAF1Q9H7N4 1312 aaKnown RBP15.98■□□□□ 0.15
RFC4-212ENST00000479307 MAPK8IP2Q13387 824 aaPredicted RBP15.81■□□□□ 0.12
RFC4-212ENST00000479307 CNKSR2Q8WXI2 1034 aa15.8■□□□□ 0.12
RFC4-212ENST00000479307 NPM3O75607 178 aaKnown RBP15.74■□□□□ 0.11
RFC4-212ENST00000479307 DMRT2Q9Y5R5 561 aa15.67■□□□□ 0.1
RFC4-212ENST00000479307 SLC4A1APQ9BWU0 796 aaKnown RBP15.64■□□□□ 0.09
RFC4-212ENST00000479307 EHMT2Q96KQ7 1210 aa15.56■□□□□ 0.08
RFC4-212ENST00000479307 RNF216Q9NWF9 866 aaPredicted RBP15.4■□□□□ 0.06
RFC4-212ENST00000479307 DNAJC5BQ9UF47 199 aa15.35■□□□□ 0.05
RFC4-212ENST00000479307 CACNB1Q02641 598 aaPredicted RBP15.26■□□□□ 0.03
RFC4-212ENST00000479307 HOXD11P31277 338 aaPredicted RBP15.24■□□□□ 0.03
RFC4-212ENST00000479307 CSRNP3Q8WYN3 585 aa15.24■□□□□ 0.03
RFC4-212ENST00000479307 DCAF8L1A6NGE4 600 aa15.21■□□□□ 0.03
RFC4-212ENST00000479307 ZBTB22O15209 634 aa15□□□□□ -0.01
RFC4-212ENST00000479307 FOXD4L1Q9NU39 408 aa14.97□□□□□ -0.01
RFC4-212ENST00000479307 RNF39Q9H2S5 420 aa14.87□□□□□ -0.03
RFC4-212ENST00000479307 SLC4A2P04920 1241 aa14.75□□□□□ -0.05
RFC4-212ENST00000479307 C1QBPQ07021 282 aaKnown RBP14.61□□□□□ -0.07
RFC4-212ENST00000479307 MYCNP04198 464 aaPredicted RBP14.59□□□□□ -0.07
RFC4-212ENST00000479307 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.48□□□□□ -0.099e-6■□□□□ 10.7
RFC4-212ENST00000479307 ATXN8OSP0DMR3 200 aa14.46□□□□□ -0.09
RFC4-212ENST00000479307 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.33□□□□□ -0.12
RFC4-212ENST00000479307 HNRNPUL2Q1KMD3 747 aaKnown RBP14.33□□□□□ -0.12
RFC4-212ENST00000479307 U3KPZ7 1027 aaPredicted RBP14.29□□□□□ -0.12
RFC4-212ENST00000479307 SAMD1Q6SPF0 538 aaPredicted RBP14.27□□□□□ -0.13
RFC4-212ENST00000479307 APLP2Q06481 763 aa14.12□□□□□ -0.15
RFC4-212ENST00000479307 ATF5Q9Y2D1 282 aaPredicted RBP14.06□□□□□ -0.16
RFC4-212ENST00000479307 CAPN15O75808 1086 aa13.92□□□□□ -0.18
RFC4-212ENST00000479307 SPINK5Q9NQ38 1064 aaPredicted RBP13.9□□□□□ -0.18
RFC4-212ENST00000479307 ZNF219Q9P2Y4 722 aaPredicted RBP13.87□□□□□ -0.19
RFC4-212ENST00000479307 DSG3P32926 999 aa13.83□□□□□ -0.2
RFC4-212ENST00000479307 FKBP8Q14318 412 aa13.76□□□□□ -0.21
RFC4-212ENST00000479307 POTEHQ6S545 545 aa13.75□□□□□ -0.21
RFC4-212ENST00000479307 TRHP20396 242 aaPredicted RBP13.71□□□□□ -0.21
RFC4-212ENST00000479307 ABCB7O75027 752 aa13.59□□□□□ -0.23
RFC4-212ENST00000479307 POLA2Q14181 598 aa13.59□□□□□ -0.23
RFC4-212ENST00000479307 FBLN2P98095 1184 aa13.55□□□□□ -0.24
RFC4-212ENST00000479307 MKRN4PQ13434 485 aaPredicted RBP13.5□□□□□ -0.25
RFC4-212ENST00000479307 ZBTB12Q9Y330 459 aaPredicted RBP13.49□□□□□ -0.25
RFC4-212ENST00000479307 SPDYE4A6NLX3 237 aa13.42□□□□□ -0.26
RFC4-212ENST00000479307 PROM2Q8N271 834 aa13.28□□□□□ -0.28
RFC4-212ENST00000479307 AMER1Q5JTC6 1135 aaPredicted RBP13.27□□□□□ -0.29
RFC4-212ENST00000479307 FBXO3Q9UK99 471 aa13.27□□□□□ -0.29
RFC4-212ENST00000479307 RBM42Q9BTD8 480 aaKnown RBP13.18□□□□□ -0.3
RFC4-212ENST00000479307 RTN4Q9NQC3 1192 aaKnown RBP13.16□□□□□ -0.3
RFC4-212ENST00000479307 SPDYE2BA6NHP3 402 aa13.12□□□□□ -0.31
RFC4-212ENST00000479307 SPDYE6P0CI01 402 aa13.12□□□□□ -0.31
RFC4-212ENST00000479307 SPDYE2Q495Y8 402 aa13.12□□□□□ -0.31
RFC4-212ENST00000479307 OSCARQ8IYS5 282 aa13.1□□□□□ -0.31
RFC4-212ENST00000479307 ZNF692Q9BU19 519 aaPredicted RBP13.08□□□□□ -0.32
RFC4-212ENST00000479307 CHRDL2Q6WN34 429 aa13.06□□□□□ -0.32
RFC4-212ENST00000479307 SSUH2Q9Y2M2 353 aa13.04□□□□□ -0.32
RFC4-212ENST00000479307 VASPP50552 380 aaPredicted RBP13.01□□□□□ -0.33
RFC4-212ENST00000479307 PABPN1Q86U42 306 aaKnown RBP eCLIP12.91□□□□□ -0.34
RFC4-212ENST00000479307 STAG3Q9UJ98 1225 aa12.9□□□□□ -0.34
RFC4-212ENST00000479307 IFNLR1Q8IU57 520 aaPredicted RBP12.83□□□□□ -0.36
RFC4-212ENST00000479307 AKT1S1Q96B36 256 aa12.82□□□□□ -0.36
RFC4-212ENST00000479307 REM2Q8IYK8 340 aaPredicted RBP12.74□□□□□ -0.37
RFC4-212ENST00000479307 SP7Q8TDD2 431 aaPredicted RBP12.73□□□□□ -0.37
RFC4-212ENST00000479307 PLCD3Q8N3E9 789 aa12.71□□□□□ -0.37
RFC4-212ENST00000479307 PIP4P2Q8N4L2 257 aa12.69□□□□□ -0.38
RFC4-212ENST00000479307 MIER1Q8N108 512 aa12.68□□□□□ -0.38
RFC4-212ENST00000479307 KLHL34Q8N239 644 aa12.68□□□□□ -0.38
RFC4-212ENST00000479307 PLEKHG5O94827 1062 aa12.66□□□□□ -0.38
RFC4-212ENST00000479307 SPOCK2Q92563 424 aa12.66□□□□□ -0.38
RFC4-212ENST00000479307 SPDYE1Q8NFV5 336 aaPredicted RBP12.64□□□□□ -0.39
RFC4-212ENST00000479307 ZBTB47Q9UFB7 747 aaPredicted RBP12.63□□□□□ -0.39
RFC4-212ENST00000479307 HAX1O00165 279 aa12.61□□□□□ -0.39
RFC4-212ENST00000479307 PITPNM1O00562 1244 aa12.61□□□□□ -0.39
RFC4-212ENST00000479307 PKD2Q13563 968 aa12.55□□□□□ -0.4
RFC4-212ENST00000479307 SLC24A1O60721 1099 aa12.54□□□□□ -0.4
RFC4-212ENST00000479307 FXR2P51116 673 aaKnown RBP eCLIP12.52□□□□□ -0.41
RFC4-212ENST00000479307 CLEC11AQ9Y240 323 aa12.5□□□□□ -0.41
RFC4-212ENST00000479307 PRR29P0C7W0 189 aa12.47□□□□□ -0.41
RFC4-212ENST00000479307 ECM2O94769 699 aaPredicted RBP12.42□□□□□ -0.42
RFC4-212ENST00000479307 EVX2Q03828 476 aa12.4□□□□□ -0.42
RFC4-212ENST00000479307 DCAF8L2P0C7V8 631 aa12.38□□□□□ -0.43
RFC4-212ENST00000479307 CREBZFQ9NS37 354 aa12.38□□□□□ -0.43
RFC4-212ENST00000479307 TRIM41Q8WV44 630 aa12.36□□□□□ -0.43
RFC4-212ENST00000479307 CIZ1Q9ULV3 898 aaPredicted RBP12.36□□□□□ -0.43
RFC4-212ENST00000479307 GSE1Q14687 1217 aa12.33□□□□□ -0.44
RFC4-212ENST00000479307 MNX1P50219 401 aaPredicted RBP12.31□□□□□ -0.44
RFC4-212ENST00000479307 NUBP1P53384 320 aa12.31□□□□□ -0.44
RFC4-212ENST00000479307 PRKAR2AP13861 404 aaKnown RBP12.3□□□□□ -0.44
RFC4-212ENST00000479307 RGL2O15211 777 aa12.26□□□□□ -0.45
RFC4-212ENST00000479307 NPM1P06748 294 aaKnown RBP eCLIP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms