RNA–Protein interactions for RNA: ENST00000376957.6

SRM-201, Transcript of spermidine synthase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRM, Length 1,266 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRM-201ENST00000376957 NISCHQ9Y2I1 1504 aa53.68■■■■■ 6.18
SRM-201ENST00000376957 CCDC180Q9P1Z9 1646 aa47.88■■■■■ 5.25
SRM-201ENST00000376957 ABCC9O60706 1549 aa47.01■■■■■ 5.12
SRM-201ENST00000376957 RB1CC1Q8TDY2 1594 aa45.22■■■■■ 4.83
SRM-201ENST00000376957 DCAF8L2P0C7V8 631 aa45.13■■■■■ 4.82
SRM-201ENST00000376957 NACADO15069 1562 aa45.1■■■■■ 4.81
SRM-201ENST00000376957 MYO15BQ96JP2 1530 aa44.75■■■■■ 4.75
SRM-201ENST00000376957 ZCCHC6Q5VYS8 1495 aaKnown RBP44.64■■■■■ 4.74
SRM-201ENST00000376957 DCAF1Q9Y4B6 1507 aa44.45■■■■■ 4.71
SRM-201ENST00000376957 UNC13AQ9UPW8 1703 aa44.03■■■■■ 4.64
SRM-201ENST00000376957 PABPN1Q86U42 306 aaKnown RBP eCLIP43.9■■■■■ 4.62
SRM-201ENST00000376957 BICRAQ9NZM4 1560 aa43.67■■■■■ 4.58
SRM-201ENST00000376957 SCRIBQ14160 1630 aa43.61■■■■■ 4.57
SRM-201ENST00000376957 SHROOM4Q9ULL8 1493 aa43.39■■■■■ 4.54
SRM-201ENST00000376957 DNAJC5BQ9UF47 199 aa43.24■■■■■ 4.51
SRM-201ENST00000376957 EIF4G1Q04637 1599 aaKnown RBP42.63■■■■■ 4.41
SRM-201ENST00000376957 CC2D2AQ9P2K1 1620 aa42.51■■■■■ 4.4
SRM-201ENST00000376957 CECR2Q9BXF3 1484 aa42.3■■■■■ 4.36
SRM-201ENST00000376957 BAZ1AQ9NRL2 1556 aaPredicted RBP41.7■■■■■ 4.27
SRM-201ENST00000376957 SMARCA4P51532 1647 aa41.69■■■■■ 4.27
SRM-201ENST00000376957 NCAPD3P42695 1498 aa41.58■■■■■ 4.25
SRM-201ENST00000376957 SMARCA2P51531 1590 aa41.56■■■■■ 4.24
SRM-201ENST00000376957 ATAD2BQ9ULI0 1458 aa41.53■■■■■ 4.24
SRM-201ENST00000376957 HMGXB3Q12766 1538 aa41.35■■■■■ 4.21
SRM-201ENST00000376957 MROH2BQ7Z745 1585 aa41.31■■■■■ 4.2
SRM-201ENST00000376957 PEG3Q9GZU2 1588 aa41.29■■■■■ 4.2
SRM-201ENST00000376957 BAZ1BQ9UIG0 1483 aaKnown RBP41.26■■■■■ 4.2
SRM-201ENST00000376957 WIZO95785 1651 aa40.87■■■■■ 4.13
SRM-201ENST00000376957 RSF1Q96T23 1441 aaPredicted RBP40.79■■■■■ 4.12
SRM-201ENST00000376957 ERCC6Q03468 1493 aa40.67■■■■■ 4.1
SRM-201ENST00000376957 LAMC3Q9Y6N6 1575 aa40.56■■■■■ 4.08
SRM-201ENST00000376957 NESP48681 1621 aa40.55■■■■■ 4.08
SRM-201ENST00000376957 TOP2AP11388 1531 aaKnown RBP40.47■■■■■ 4.07
SRM-201ENST00000376957 CADPSQ9ULU8 1353 aa40.38■■■■■ 4.06
SRM-201ENST00000376957 PDS5BQ9NTI5 1447 aa40.35■■■■■ 4.05
SRM-201ENST00000376957 CUX2O14529 1486 aa40.27■■■■■ 4.04
SRM-201ENST00000376957 KIF21AQ7Z4S6 1674 aa40.1■■■■■ 4.01
SRM-201ENST00000376957 CFTRP13569 1480 aa40.05■■■■■ 4
SRM-201ENST00000376957 THOC2Q8NI27 1593 aaKnown RBP39.99■■■■□ 3.99
SRM-201ENST00000376957 CCDC88BA6NC98 1476 aa39.99■■■■□ 3.99
SRM-201ENST00000376957 FANCD2Q9BXW9 1451 aa39.9■■■■□ 3.98
SRM-201ENST00000376957 CEP164Q9UPV0 1460 aa39.9■■■■□ 3.98
SRM-201ENST00000376957 MRC2Q9UBG0 1479 aa39.87■■■■□ 3.97
SRM-201ENST00000376957 PRDM2Q13029 1718 aa39.75■■■■□ 3.95
SRM-201ENST00000376957 SUPT5HO00267 1087 aaKnown RBP39.71■■■■□ 3.95
SRM-201ENST00000376957 WDR62O43379 1518 aa39.7■■■■□ 3.95
SRM-201ENST00000376957 URB2Q14146 1524 aaKnown RBP39.43■■■■□ 3.9
SRM-201ENST00000376957 ABCC8Q09428 1581 aa39.35■■■■□ 3.89
SRM-201ENST00000376957 DNAJC5Q9H3Z4 198 aa39.29■■■■□ 3.88
SRM-201ENST00000376957 TOPBP1Q92547 1522 aa39.21■■■■□ 3.87
SRM-201ENST00000376957 DNMBPQ6XZF7 1577 aa39.16■■■■□ 3.86
SRM-201ENST00000376957 IFT140Q96RY7 1462 aa39.09■■■■□ 3.85
SRM-201ENST00000376957 POLA1P09884 1462 aaPredicted RBP38.84■■■■□ 3.81
SRM-201ENST00000376957 ZNF608Q9ULD9 1512 aaPredicted RBP38.8■■■■□ 3.8
SRM-201ENST00000376957 SOGA1O94964 1423 aa38.77■■■■□ 3.8
SRM-201ENST00000376957 CUX1P39880 1505 aa38.77■■■■□ 3.8
SRM-201ENST00000376957 TARBP1Q13395 1621 aaKnown RBP38.74■■■■□ 3.79
SRM-201ENST00000376957 FGD5Q6ZNL6 1462 aa38.73■■■■□ 3.79
SRM-201ENST00000376957 EIF4G3O43432 1585 aaKnown RBP38.69■■■■□ 3.78
SRM-201ENST00000376957 OSCARQ8IYS5 282 aa38.66■■■■□ 3.78
SRM-201ENST00000376957 RAD54L2Q9Y4B4 1467 aa38.66■■■■□ 3.78
SRM-201ENST00000376957 AQRO60306 1485 aaKnown RBP eCLIP38.6■■■■□ 3.772e-6■■■■■ 27
SRM-201ENST00000376957 WDR97A6NE52 1622 aa38.57■■■■□ 3.77
SRM-201ENST00000376957 WRNQ14191 1432 aaPredicted RBP eCLIP38.55■■■■□ 3.76
SRM-201ENST00000376957 TDRD9Q8NDG6 1382 aaKnown RBP38.53■■■■□ 3.76
SRM-201ENST00000376957 TOP2BQ02880 1626 aa38.45■■■■□ 3.75
SRM-201ENST00000376957 BIVM-ERCC5R4GMW8 1640 aa38.43■■■■□ 3.74
SRM-201ENST00000376957 ABCA10Q8WWZ4 1543 aa38.37■■■■□ 3.73
SRM-201ENST00000376957 SYNJ1O43426 1573 aa38.36■■■■□ 3.73
SRM-201ENST00000376957 FBLN2P98095 1184 aa38.35■■■■□ 3.73
SRM-201ENST00000376957 GRIN2BQ13224 1484 aa38.34■■■■□ 3.73
SRM-201ENST00000376957 GAPVD1Q14C86 1478 aa38.3■■■■□ 3.72
SRM-201ENST00000376957 MAGI1Q96QZ7 1491 aaPredicted RBP38.28■■■■□ 3.72
SRM-201ENST00000376957 SNAPC4Q5SXM2 1469 aa38.26■■■■□ 3.72
SRM-201ENST00000376957 CHD1O14646 1710 aa38.24■■■■□ 3.71
SRM-201ENST00000376957 CHMP7Q8WUX9 453 aaPredicted RBP38.22■■■■□ 3.71
SRM-201ENST00000376957 PBRM1Q86U86 1689 aa38.19■■■■□ 3.7
SRM-201ENST00000376957 ABCA5Q8WWZ7 1642 aa38.18■■■■□ 3.7
SRM-201ENST00000376957 SYNJ2O15056 1496 aa38.11■■■■□ 3.69
SRM-201ENST00000376957 ERICH3Q5RHP9 1530 aa37.94■■■■□ 3.66
SRM-201ENST00000376957 TRIM41Q8WV44 630 aa37.94■■■■□ 3.66
SRM-201ENST00000376957 RIMBP3CA6NJZ7 1639 aa37.89■■■■□ 3.66
SRM-201ENST00000376957 RIMBP3BA6NNM3 1639 aa37.89■■■■□ 3.66
SRM-201ENST00000376957 RIMBP3Q9UFD9 1639 aa37.89■■■■□ 3.66
SRM-201ENST00000376957 FHAD1B1AJZ9 1412 aa37.87■■■■□ 3.65
SRM-201ENST00000376957 ARHGEF11O15085 1522 aa37.87■■■■□ 3.65
SRM-201ENST00000376957 ADAMTS12P58397 1594 aa37.85■■■■□ 3.65
SRM-201ENST00000376957 KIF27Q86VH2 1401 aa37.82■■■■□ 3.64
SRM-201ENST00000376957 GRIN2AQ12879 1464 aa37.8■■■■□ 3.64
SRM-201ENST00000376957 CLASP1Q7Z460 1538 aa37.79■■■■□ 3.64
SRM-201ENST00000376957 CYB5RLQ6IPT4 315 aa37.63■■■■□ 3.61
SRM-201ENST00000376957 NUP160Q12769 1436 aa37.61■■■■□ 3.61
SRM-201ENST00000376957 IGF1RP08069 1367 aa37.6■■■■□ 3.61
SRM-201ENST00000376957 CUL7Q14999 1698 aa37.58■■■■□ 3.61
SRM-201ENST00000376957 CEP170Q5SW79 1584 aa37.55■■■■□ 3.6
SRM-201ENST00000376957 ARAP1Q96P48 1450 aa37.51■■■■□ 3.59
SRM-201ENST00000376957 CARMIL1Q5VZK9 1371 aa37.43■■■■□ 3.58
SRM-201ENST00000376957 JPH4Q96JJ6 628 aa37.34■■■■□ 3.57
SRM-201ENST00000376957 SHROOM2Q13796 1616 aa37.34■■■■□ 3.57
SRM-201ENST00000376957 RUSC2Q8N2Y8 1516 aa37.28■■■■□ 3.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms