Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SH3RF1Q7Z6J0 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC28.75■■■□□ 2.19
SH3RF1Q7Z6J0 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC28.75■■■□□ 2.19
SH3RF1Q7Z6J0 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.75■■■□□ 2.19
SH3RF1Q7Z6J0 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
SH3RF1Q7Z6J0 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SH3RF1Q7Z6J0 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SH3RF1Q7Z6J0 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SH3RF1Q7Z6J0 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SH3RF1Q7Z6J0 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
SH3RF1Q7Z6J0 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SH3RF1Q7Z6J0 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.71■■■□□ 2.19
SH3RF1Q7Z6J0 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.71■■■□□ 2.19
SH3RF1Q7Z6J0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC28.71■■■□□ 2.19
SH3RF1Q7Z6J0 HYI-213ENST00000583037 1322 ntTSL 5 BASIC28.7■■■□□ 2.19
SH3RF1Q7Z6J0 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
SH3RF1Q7Z6J0 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
SH3RF1Q7Z6J0 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
SH3RF1Q7Z6J0 GFER-205ENST00000569451 517 ntTSL 5 BASIC28.69■■■□□ 2.18
SH3RF1Q7Z6J0 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SH3RF1Q7Z6J0 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SH3RF1Q7Z6J0 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SH3RF1Q7Z6J0 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
SH3RF1Q7Z6J0 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SH3RF1Q7Z6J0 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC28.67■■■□□ 2.18
SH3RF1Q7Z6J0 AC135983.2-203ENST00000454486 1613 ntBASIC28.67■■■□□ 2.18
SH3RF1Q7Z6J0 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
SH3RF1Q7Z6J0 BX255925.1-201ENST00000566954 1854 ntBASIC28.67■■■□□ 2.18
SH3RF1Q7Z6J0 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC28.66■■■□□ 2.18
SH3RF1Q7Z6J0 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SH3RF1Q7Z6J0 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC28.66■■■□□ 2.18
SH3RF1Q7Z6J0 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.65■■■□□ 2.18
SH3RF1Q7Z6J0 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
SH3RF1Q7Z6J0 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
SH3RF1Q7Z6J0 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.64■■■□□ 2.17
SH3RF1Q7Z6J0 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.63■■■□□ 2.17
SH3RF1Q7Z6J0 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SH3RF1Q7Z6J0 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC28.63■■■□□ 2.17
SH3RF1Q7Z6J0 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SH3RF1Q7Z6J0 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SH3RF1Q7Z6J0 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SH3RF1Q7Z6J0 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SH3RF1Q7Z6J0 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC28.62■■■□□ 2.17
SH3RF1Q7Z6J0 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SH3RF1Q7Z6J0 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
SH3RF1Q7Z6J0 CHST11-203ENST00000547956 936 ntTSL 2 BASIC28.62■■■□□ 2.17
SH3RF1Q7Z6J0 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
SH3RF1Q7Z6J0 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC28.62■■■□□ 2.17
SH3RF1Q7Z6J0 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC28.61■■■□□ 2.17
SH3RF1Q7Z6J0 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC28.61■■■□□ 2.17
SH3RF1Q7Z6J0 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
SH3RF1Q7Z6J0 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SH3RF1Q7Z6J0 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SH3RF1Q7Z6J0 AC060814.1-201ENST00000554326 538 ntBASIC28.61■■■□□ 2.17
SH3RF1Q7Z6J0 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
SH3RF1Q7Z6J0 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.61■■■□□ 2.17
SH3RF1Q7Z6J0 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SH3RF1Q7Z6J0 AL121749.1-202ENST00000609313 2153 ntBASIC28.6■■■□□ 2.17
SH3RF1Q7Z6J0 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
SH3RF1Q7Z6J0 AC004987.1-201ENST00000428627 508 ntBASIC28.6■■■□□ 2.17
SH3RF1Q7Z6J0 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
SH3RF1Q7Z6J0 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SH3RF1Q7Z6J0 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 MEST-211ENST00000437945 1455 ntTSL 5 BASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 WHAMMP2-203ENST00000563942 1603 ntBASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 KRT18P60-201ENST00000312876 1297 ntBASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 TSPY13P-201ENST00000338964 914 ntBASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 AP002414.2-202ENST00000590929 1450 ntBASIC28.59■■■□□ 2.17
SH3RF1Q7Z6J0 LINC01003-201ENST00000564834 1764 ntBASIC28.58■■■□□ 2.17
SH3RF1Q7Z6J0 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SH3RF1Q7Z6J0 RARRES2P1-201ENST00000474487 481 ntBASIC28.58■■■□□ 2.17
SH3RF1Q7Z6J0 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC28.58■■■□□ 2.17
SH3RF1Q7Z6J0 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SH3RF1Q7Z6J0 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC28.58■■■□□ 2.17
SH3RF1Q7Z6J0 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC28.57■■■□□ 2.16
SH3RF1Q7Z6J0 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.57■■■□□ 2.16
SH3RF1Q7Z6J0 ATP5G2P3-201ENST00000429083 425 ntBASIC28.55■■■□□ 2.16
SH3RF1Q7Z6J0 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.55■■■□□ 2.16
SH3RF1Q7Z6J0 SHF-208ENST00000560734 1731 ntTSL 3 BASIC28.55■■■□□ 2.16
SH3RF1Q7Z6J0 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SH3RF1Q7Z6J0 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.54■■■□□ 2.16
SH3RF1Q7Z6J0 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SH3RF1Q7Z6J0 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SH3RF1Q7Z6J0 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC28.53■■■□□ 2.16
SH3RF1Q7Z6J0 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SH3RF1Q7Z6J0 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC28.53■■■□□ 2.16
SH3RF1Q7Z6J0 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.52■■■□□ 2.16
SH3RF1Q7Z6J0 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC28.52■■■□□ 2.16
SH3RF1Q7Z6J0 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
SH3RF1Q7Z6J0 GUK1-208ENST00000366728 842 ntTSL 2 BASIC28.51■■■□□ 2.15
SH3RF1Q7Z6J0 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SH3RF1Q7Z6J0 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC28.51■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms