Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC38.39■■■■□ 3.74
SH3RF1Q7Z6J0 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC38.28■■■■□ 3.72
SH3RF1Q7Z6J0 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC37.85■■■■□ 3.65
SH3RF1Q7Z6J0 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC37.83■■■■□ 3.65
SH3RF1Q7Z6J0 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
SH3RF1Q7Z6J0 AL356512.1-201ENST00000607453 1739 ntBASIC37.16■■■■□ 3.54
SH3RF1Q7Z6J0 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
SH3RF1Q7Z6J0 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC36.99■■■■□ 3.51
SH3RF1Q7Z6J0 HES6-203ENST00000409160 1600 ntTSL 2 BASIC36.98■■■■□ 3.51
SH3RF1Q7Z6J0 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC36.96■■■■□ 3.51
SH3RF1Q7Z6J0 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC36.68■■■■□ 3.46
SH3RF1Q7Z6J0 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC36.67■■■■□ 3.46
SH3RF1Q7Z6J0 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC36.59■■■■□ 3.45
SH3RF1Q7Z6J0 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC36.51■■■■□ 3.44
SH3RF1Q7Z6J0 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC36.5■■■■□ 3.43
SH3RF1Q7Z6J0 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC36.27■■■■□ 3.4
SH3RF1Q7Z6J0 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC36.24■■■■□ 3.39
SH3RF1Q7Z6J0 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC36.22■■■■□ 3.39
SH3RF1Q7Z6J0 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC36.19■■■■□ 3.38
SH3RF1Q7Z6J0 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC36.13■■■■□ 3.37
SH3RF1Q7Z6J0 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC36.05■■■■□ 3.36
SH3RF1Q7Z6J0 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC36■■■■□ 3.35
SH3RF1Q7Z6J0 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC35.76■■■■□ 3.31
SH3RF1Q7Z6J0 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC35.72■■■■□ 3.31
SH3RF1Q7Z6J0 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.65■■■■□ 3.3
SH3RF1Q7Z6J0 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SH3RF1Q7Z6J0 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC35.53■■■■□ 3.28
SH3RF1Q7Z6J0 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC35.52■■■■□ 3.28
SH3RF1Q7Z6J0 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
SH3RF1Q7Z6J0 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC35.47■■■■□ 3.27
SH3RF1Q7Z6J0 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
SH3RF1Q7Z6J0 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC35.43■■■■□ 3.26
SH3RF1Q7Z6J0 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC35.4■■■■□ 3.26
SH3RF1Q7Z6J0 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC35.39■■■■□ 3.26
SH3RF1Q7Z6J0 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
SH3RF1Q7Z6J0 INO80B-203ENST00000409917 796 ntTSL 2 BASIC35.31■■■■□ 3.24
SH3RF1Q7Z6J0 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC35.31■■■■□ 3.24
SH3RF1Q7Z6J0 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC35.16■■■■□ 3.22
SH3RF1Q7Z6J0 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC35.09■■■■□ 3.21
SH3RF1Q7Z6J0 ZNRF2P1-201ENST00000441407 443 ntBASIC35.02■■■■□ 3.2
SH3RF1Q7Z6J0 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
SH3RF1Q7Z6J0 AC006077.2-201ENST00000623591 457 ntBASIC34.97■■■■□ 3.19
SH3RF1Q7Z6J0 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC34.91■■■■□ 3.18
SH3RF1Q7Z6J0 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC34.87■■■■□ 3.17
SH3RF1Q7Z6J0 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC34.86■■■■□ 3.17
SH3RF1Q7Z6J0 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC34.73■■■■□ 3.15
SH3RF1Q7Z6J0 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC34.67■■■■□ 3.14
SH3RF1Q7Z6J0 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
SH3RF1Q7Z6J0 AC015813.7-201ENST00000623294 581 ntBASIC34.66■■■■□ 3.14
SH3RF1Q7Z6J0 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC34.65■■■■□ 3.14
SH3RF1Q7Z6J0 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC34.64■■■■□ 3.14
SH3RF1Q7Z6J0 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
SH3RF1Q7Z6J0 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
SH3RF1Q7Z6J0 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
SH3RF1Q7Z6J0 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC34.39■■■■□ 3.1
SH3RF1Q7Z6J0 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
SH3RF1Q7Z6J0 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC34.27■■■■□ 3.08
SH3RF1Q7Z6J0 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC34.22■■■■□ 3.07
SH3RF1Q7Z6J0 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC34.16■■■■□ 3.06
SH3RF1Q7Z6J0 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
SH3RF1Q7Z6J0 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
SH3RF1Q7Z6J0 AP002365.1-201ENST00000603448 772 ntBASIC34.15■■■■□ 3.06
SH3RF1Q7Z6J0 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC34.14■■■■□ 3.06
SH3RF1Q7Z6J0 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC34.04■■■■□ 3.04
SH3RF1Q7Z6J0 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC33.94■■■■□ 3.02
SH3RF1Q7Z6J0 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC33.94■■■■□ 3.02
SH3RF1Q7Z6J0 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC33.93■■■■□ 3.02
SH3RF1Q7Z6J0 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC33.93■■■■□ 3.02
SH3RF1Q7Z6J0 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC33.93■■■■□ 3.02
SH3RF1Q7Z6J0 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
SH3RF1Q7Z6J0 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
SH3RF1Q7Z6J0 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC33.84■■■■□ 3.01
SH3RF1Q7Z6J0 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC33.8■■■■□ 3
SH3RF1Q7Z6J0 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
SH3RF1Q7Z6J0 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC33.79■■■■□ 3
SH3RF1Q7Z6J0 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.79■■■■□ 3
SH3RF1Q7Z6J0 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC33.79■■■■□ 3
SH3RF1Q7Z6J0 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC33.76■■■□□ 2.99
SH3RF1Q7Z6J0 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC33.74■■■□□ 2.99
SH3RF1Q7Z6J0 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
SH3RF1Q7Z6J0 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC33.7■■■□□ 2.99
SH3RF1Q7Z6J0 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC33.69■■■□□ 2.98
SH3RF1Q7Z6J0 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SH3RF1Q7Z6J0 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC33.68■■■□□ 2.98
SH3RF1Q7Z6J0 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC33.63■■■□□ 2.97
SH3RF1Q7Z6J0 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC33.6■■■□□ 2.97
SH3RF1Q7Z6J0 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC33.53■■■□□ 2.96
SH3RF1Q7Z6J0 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC33.52■■■□□ 2.96
SH3RF1Q7Z6J0 ILK-212ENST00000532063 1617 ntTSL 2 BASIC33.52■■■□□ 2.96
SH3RF1Q7Z6J0 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
SH3RF1Q7Z6J0 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
SH3RF1Q7Z6J0 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC33.43■■■□□ 2.94
SH3RF1Q7Z6J0 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC33.41■■■□□ 2.94
SH3RF1Q7Z6J0 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
SH3RF1Q7Z6J0 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
SH3RF1Q7Z6J0 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC33.36■■■□□ 2.93
SH3RF1Q7Z6J0 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC33.35■■■□□ 2.93
SH3RF1Q7Z6J0 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC33.35■■■□□ 2.93
SH3RF1Q7Z6J0 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC33.34■■■□□ 2.93
SH3RF1Q7Z6J0 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms