RNA–Protein interactions for RNA: ENST00000252622.14

LSM7-201, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM7, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM7-201ENST00000252622 NISCHQ9Y2I1 1504 aa61.25■■■■■ 7.4
LSM7-201ENST00000252622 CCDC180Q9P1Z9 1646 aa54.54■■■■■ 6.32
LSM7-201ENST00000252622 ABCC9O60706 1549 aa53.37■■■■■ 6.13
LSM7-201ENST00000252622 RB1CC1Q8TDY2 1594 aa51.36■■■■■ 5.81
LSM7-201ENST00000252622 NACADO15069 1562 aa51.29■■■■■ 5.8
LSM7-201ENST00000252622 DCAF8L2P0C7V8 631 aa51.06■■■■■ 5.76
LSM7-201ENST00000252622 ZCCHC6Q5VYS8 1495 aaKnown RBP51.03■■■■■ 5.76
LSM7-201ENST00000252622 MYO15BQ96JP2 1530 aa51■■■■■ 5.75
LSM7-201ENST00000252622 DCAF1Q9Y4B6 1507 aa50.73■■■■■ 5.71
LSM7-201ENST00000252622 UNC13AQ9UPW8 1703 aa50.14■■■■■ 5.62
LSM7-201ENST00000252622 PABPN1Q86U42 306 aaKnown RBP eCLIP49.81■■■■■ 5.56
LSM7-201ENST00000252622 BICRAQ9NZM4 1560 aa49.8■■■■■ 5.56
LSM7-201ENST00000252622 SCRIBQ14160 1630 aa49.68■■■■■ 5.54
LSM7-201ENST00000252622 SHROOM4Q9ULL8 1493 aa49.37■■■■■ 5.49
LSM7-201ENST00000252622 DNAJC5BQ9UF47 199 aa49.04■■■■■ 5.44
LSM7-201ENST00000252622 EIF4G1Q04637 1599 aaKnown RBP48.5■■■■■ 5.35
LSM7-201ENST00000252622 CC2D2AQ9P2K1 1620 aa48.3■■■■■ 5.32
LSM7-201ENST00000252622 CECR2Q9BXF3 1484 aa48■■■■■ 5.27
LSM7-201ENST00000252622 SMARCA4P51532 1647 aa47.55■■■■■ 5.2
LSM7-201ENST00000252622 BAZ1AQ9NRL2 1556 aaPredicted RBP47.49■■■■■ 5.19
LSM7-201ENST00000252622 NCAPD3P42695 1498 aa47.33■■■■■ 5.17
LSM7-201ENST00000252622 ATAD2BQ9ULI0 1458 aa47.32■■■■■ 5.17
LSM7-201ENST00000252622 SMARCA2P51531 1590 aa47.27■■■■■ 5.16
LSM7-201ENST00000252622 MROH2BQ7Z745 1585 aa47.18■■■■■ 5.14
LSM7-201ENST00000252622 PEG3Q9GZU2 1588 aa47.13■■■■■ 5.14
LSM7-201ENST00000252622 HMGXB3Q12766 1538 aa47.1■■■■■ 5.13
LSM7-201ENST00000252622 BAZ1BQ9UIG0 1483 aaKnown RBP46.92■■■■■ 5.1
LSM7-201ENST00000252622 WIZO95785 1651 aa46.64■■■■■ 5.06
LSM7-201ENST00000252622 RSF1Q96T23 1441 aaPredicted RBP46.62■■■■■ 5.05
LSM7-201ENST00000252622 TOP2AP11388 1531 aaKnown RBP46.2■■■■■ 4.99
LSM7-201ENST00000252622 NESP48681 1621 aa46.15■■■■■ 4.98
LSM7-201ENST00000252622 LAMC3Q9Y6N6 1575 aa46.09■■■■■ 4.97
LSM7-201ENST00000252622 ERCC6Q03468 1493 aa46.02■■■■■ 4.96
LSM7-201ENST00000252622 CADPSQ9ULU8 1353 aa45.92■■■■■ 4.94
LSM7-201ENST00000252622 PDS5BQ9NTI5 1447 aa45.77■■■■■ 4.92
LSM7-201ENST00000252622 CFTRP13569 1480 aa45.64■■■■■ 4.9
LSM7-201ENST00000252622 CUX2O14529 1486 aa45.63■■■■■ 4.9
LSM7-201ENST00000252622 KIF21AQ7Z4S6 1674 aa45.62■■■■■ 4.89
LSM7-201ENST00000252622 CCDC88BA6NC98 1476 aa45.61■■■■■ 4.89
LSM7-201ENST00000252622 THOC2Q8NI27 1593 aaKnown RBP45.54■■■■■ 4.88
LSM7-201ENST00000252622 FANCD2Q9BXW9 1451 aa45.38■■■■■ 4.86
LSM7-201ENST00000252622 CEP164Q9UPV0 1460 aa45.35■■■■■ 4.85
LSM7-201ENST00000252622 MRC2Q9UBG0 1479 aa45.32■■■■■ 4.85
LSM7-201ENST00000252622 PRDM2Q13029 1718 aa45.28■■■■■ 4.84
LSM7-201ENST00000252622 SUPT5HO00267 1087 aaKnown RBP45.24■■■■■ 4.83
LSM7-201ENST00000252622 WDR62O43379 1518 aa45.19■■■■■ 4.82
LSM7-201ENST00000252622 URB2Q14146 1524 aaKnown RBP44.94■■■■■ 4.78
LSM7-201ENST00000252622 ABCC8Q09428 1581 aa44.67■■■■■ 4.74
LSM7-201ENST00000252622 TOPBP1Q92547 1522 aa44.65■■■■■ 4.74
LSM7-201ENST00000252622 DNMBPQ6XZF7 1577 aa44.61■■■■■ 4.73
LSM7-201ENST00000252622 IFT140Q96RY7 1462 aa44.41■■■■■ 4.7
LSM7-201ENST00000252622 DNAJC5Q9H3Z4 198 aa44.28■■■■■ 4.68
LSM7-201ENST00000252622 CUX1P39880 1505 aa44.28■■■■■ 4.68
LSM7-201ENST00000252622 POLA1P09884 1462 aaPredicted RBP44.27■■■■■ 4.68
LSM7-201ENST00000252622 TARBP1Q13395 1621 aaKnown RBP44.18■■■■■ 4.66
LSM7-201ENST00000252622 ZNF608Q9ULD9 1512 aaPredicted RBP44.18■■■■■ 4.66
LSM7-201ENST00000252622 FGD5Q6ZNL6 1462 aa44.15■■■■■ 4.66
LSM7-201ENST00000252622 SOGA1O94964 1423 aa44.06■■■■■ 4.64
LSM7-201ENST00000252622 RAD54L2Q9Y4B4 1467 aa44.04■■■■■ 4.64
LSM7-201ENST00000252622 EIF4G3O43432 1585 aaKnown RBP44.04■■■■■ 4.64
LSM7-201ENST00000252622 WRNQ14191 1432 aaPredicted RBP eCLIP43.96■■■■■ 4.63
LSM7-201ENST00000252622 AQRO60306 1485 aaKnown RBP eCLIP43.91■■■■■ 4.623e-7■■■■□ 21.6
LSM7-201ENST00000252622 WDR97A6NE52 1622 aa43.89■■■■■ 4.62
LSM7-201ENST00000252622 TOP2BQ02880 1626 aa43.88■■■■■ 4.62
LSM7-201ENST00000252622 BIVM-ERCC5R4GMW8 1640 aa43.88■■■■■ 4.62
LSM7-201ENST00000252622 SYNJ1O43426 1573 aa43.85■■■■■ 4.61
LSM7-201ENST00000252622 TDRD9Q8NDG6 1382 aaKnown RBP43.8■■■■■ 4.6
LSM7-201ENST00000252622 ABCA10Q8WWZ4 1543 aa43.73■■■■■ 4.59
LSM7-201ENST00000252622 OSCARQ8IYS5 282 aa43.65■■■■■ 4.58
LSM7-201ENST00000252622 GRIN2BQ13224 1484 aa43.59■■■■■ 4.57
LSM7-201ENST00000252622 ABCA5Q8WWZ7 1642 aa43.57■■■■■ 4.57
LSM7-201ENST00000252622 GAPVD1Q14C86 1478 aa43.57■■■■■ 4.56
LSM7-201ENST00000252622 SNAPC4Q5SXM2 1469 aa43.53■■■■■ 4.56
LSM7-201ENST00000252622 MAGI1Q96QZ7 1491 aaPredicted RBP43.51■■■■■ 4.56
LSM7-201ENST00000252622 PBRM1Q86U86 1689 aa43.48■■■■■ 4.55
LSM7-201ENST00000252622 CHD1O14646 1710 aa43.47■■■■■ 4.55
LSM7-201ENST00000252622 FBLN2P98095 1184 aa43.34■■■■■ 4.53
LSM7-201ENST00000252622 SYNJ2O15056 1496 aa43.32■■■■■ 4.53
LSM7-201ENST00000252622 CHMP7Q8WUX9 453 aaPredicted RBP43.25■■■■■ 4.51
LSM7-201ENST00000252622 ERICH3Q5RHP9 1530 aa43.22■■■■■ 4.51
LSM7-201ENST00000252622 ADAMTS12P58397 1594 aa43.17■■■■■ 4.5
LSM7-201ENST00000252622 FHAD1B1AJZ9 1412 aa43.07■■■■■ 4.49
LSM7-201ENST00000252622 CLASP1Q7Z460 1538 aa43.05■■■■■ 4.48
LSM7-201ENST00000252622 KIF27Q86VH2 1401 aa43.05■■■■■ 4.48
LSM7-201ENST00000252622 GRIN2AQ12879 1464 aa43.03■■■■■ 4.48
LSM7-201ENST00000252622 ARHGEF11O15085 1522 aa42.99■■■■■ 4.47
LSM7-201ENST00000252622 RIMBP3CA6NJZ7 1639 aa42.99■■■■■ 4.47
LSM7-201ENST00000252622 RIMBP3BA6NNM3 1639 aa42.99■■■■■ 4.47
LSM7-201ENST00000252622 RIMBP3Q9UFD9 1639 aa42.99■■■■■ 4.47
LSM7-201ENST00000252622 IGF1RP08069 1367 aa42.87■■■■■ 4.45
LSM7-201ENST00000252622 NUP160Q12769 1436 aa42.87■■■■■ 4.45
LSM7-201ENST00000252622 CEP170Q5SW79 1584 aa42.81■■■■■ 4.44
LSM7-201ENST00000252622 CUL7Q14999 1698 aa42.8■■■■■ 4.44
LSM7-201ENST00000252622 TRIM41Q8WV44 630 aa42.78■■■■■ 4.44
LSM7-201ENST00000252622 ARAP1Q96P48 1450 aa42.64■■■■■ 4.42
LSM7-201ENST00000252622 CARMIL1Q5VZK9 1371 aa42.61■■■■■ 4.41
LSM7-201ENST00000252622 RUSC2Q8N2Y8 1516 aa42.57■■■■■ 4.41
LSM7-201ENST00000252622 SHROOM2Q13796 1616 aa42.55■■■■■ 4.4
LSM7-201ENST00000252622 CYB5RLQ6IPT4 315 aa42.51■■■■■ 4.4
LSM7-201ENST00000252622 KIAA0586Q9BVV6 1533 aa42.41■■■■■ 4.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms