Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 AP006587.1-201ENST00000534129 1502 ntBASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 AC004264.1-201ENST00000608354 794 ntBASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PPP4R4Q6NUP7 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 SLC25A6P5-201ENST00000435663 894 ntBASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PPP4R4Q6NUP7 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms