RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 NISCHQ9Y2I1 1504 aa35.21■■■■□ 3.23
SYNE3-202ENST00000553340 SHROOM4Q9ULL8 1493 aa30.3■■■□□ 2.44
SYNE3-202ENST00000553340 SUPT5HO00267 1087 aaKnown RBP29.94■■■□□ 2.38
SYNE3-202ENST00000553340 ZCCHC6Q5VYS8 1495 aaKnown RBP29.86■■■□□ 2.37
SYNE3-202ENST00000553340 CCDC180Q9P1Z9 1646 aa29.75■■■□□ 2.35
SYNE3-202ENST00000553340 CHIC1Q5VXU3 224 aa29.32■■■□□ 2.28
SYNE3-202ENST00000553340 MYO15BQ96JP2 1530 aa29.28■■■□□ 2.28
SYNE3-202ENST00000553340 HRCP23327 699 aa29.17■■■□□ 2.26
SYNE3-202ENST00000553340 DCAF8L2P0C7V8 631 aa29.08■■■□□ 2.25
SYNE3-202ENST00000553340 DCAF1Q9Y4B6 1507 aa28.91■■■□□ 2.22
SYNE3-202ENST00000553340 PCGF6Q9BYE7 350 aa28.85■■■□□ 2.21
SYNE3-202ENST00000553340 LOC105371045A0A1W2PR82 267 aa28.45■■■□□ 2.14
SYNE3-202ENST00000553340 PPARGC1BQ86YN6 1023 aaKnown RBP28.42■■■□□ 2.14
SYNE3-202ENST00000553340 ABCC9O60706 1549 aa28.26■■■□□ 2.12
SYNE3-202ENST00000553340 TRIM26Q12899 539 aaPredicted RBP28.24■■■□□ 2.11
SYNE3-202ENST00000553340 RSF1Q96T23 1441 aaPredicted RBP28.02■■■□□ 2.08
SYNE3-202ENST00000553340 SCRIBQ14160 1630 aa27.93■■■□□ 2.06
SYNE3-202ENST00000553340 TRIM41Q8WV44 630 aa27.89■■■□□ 2.06
SYNE3-202ENST00000553340 ZEB1P37275 1124 aaPredicted RBP27.87■■■□□ 2.05
SYNE3-202ENST00000553340 RB1CC1Q8TDY2 1594 aa27.81■■■□□ 2.04
SYNE3-202ENST00000553340 FAM9AQ8IZU1 332 aaPredicted RBP27.64■■■□□ 2.01
SYNE3-202ENST00000553340 NACADO15069 1562 aa27.42■■□□□ 1.98
SYNE3-202ENST00000553340 CECR2Q9BXF3 1484 aa27.41■■□□□ 1.98
SYNE3-202ENST00000553340 MROH2BQ7Z745 1585 aa27.38■■□□□ 1.97
SYNE3-202ENST00000553340 EHMT2Q96KQ7 1210 aa27.37■■□□□ 1.97
SYNE3-202ENST00000553340 WIZO95785 1651 aa27.26■■□□□ 1.95
SYNE3-202ENST00000553340 PELP1Q8IZL8 1130 aaKnown RBP27.18■■□□□ 1.94
SYNE3-202ENST00000553340 BAZ1AQ9NRL2 1556 aaPredicted RBP27.15■■□□□ 1.94
SYNE3-202ENST00000553340 SCAF1Q9H7N4 1312 aaKnown RBP27.1■■□□□ 1.93
SYNE3-202ENST00000553340 EIF4G1Q04637 1599 aaKnown RBP27.07■■□□□ 1.92
SYNE3-202ENST00000553340 CCER1Q8TC90 406 aaPredicted RBP26.99■■□□□ 1.91
SYNE3-202ENST00000553340 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.98■■□□□ 1.91
SYNE3-202ENST00000553340 WRNQ14191 1432 aaPredicted RBP eCLIP26.85■■□□□ 1.89
SYNE3-202ENST00000553340 TOP2AP11388 1531 aaKnown RBP26.85■■□□□ 1.89
SYNE3-202ENST00000553340 ABCC8Q09428 1581 aa26.8■■□□□ 1.88
SYNE3-202ENST00000553340 CCDC88BA6NC98 1476 aa26.79■■□□□ 1.88
SYNE3-202ENST00000553340 ACIN1Q9UKV3 1341 aaKnown RBP26.75■■□□□ 1.87
SYNE3-202ENST00000553340 CEP162Q5TB80 1403 aa26.74■■□□□ 1.87
SYNE3-202ENST00000553340 SMARCA4P51532 1647 aa26.73■■□□□ 1.87
SYNE3-202ENST00000553340 SMARCA2P51531 1590 aa26.71■■□□□ 1.87
SYNE3-202ENST00000553340 TNIKQ9UKE5 1360 aa26.69■■□□□ 1.86
SYNE3-202ENST00000553340 DIEXFQ68CQ4 756 aaKnown RBP26.69■■□□□ 1.86
SYNE3-202ENST00000553340 EEA1Q15075 1411 aa26.64■■□□□ 1.86
SYNE3-202ENST00000553340 NEUROD1Q13562 356 aa26.64■■□□□ 1.86
SYNE3-202ENST00000553340 SOGA1O94964 1423 aa26.64■■□□□ 1.85
SYNE3-202ENST00000553340 TTBK1Q5TCY1 1321 aaPredicted RBP26.61■■□□□ 1.85
SYNE3-202ENST00000553340 CENPBP07199 599 aaPredicted RBP26.59■■□□□ 1.85
SYNE3-202ENST00000553340 CSRNP3Q8WYN3 585 aa26.57■■□□□ 1.84
SYNE3-202ENST00000553340 UBTFP17480 764 aaKnown RBP26.51■■□□□ 1.83
SYNE3-202ENST00000553340 RUSC2Q8N2Y8 1516 aa26.46■■□□□ 1.83
SYNE3-202ENST00000553340 GOLGA3Q08378 1498 aa26.46■■□□□ 1.83
SYNE3-202ENST00000553340 UNC13AQ9UPW8 1703 aa26.46■■□□□ 1.83
SYNE3-202ENST00000553340 GTF3C3Q9Y5Q9 886 aa26.44■■□□□ 1.82
SYNE3-202ENST00000553340 ZNF316A6NFI3 1004 aaPredicted RBP26.39■■□□□ 1.81
SYNE3-202ENST00000553340 CEP164Q9UPV0 1460 aa26.27■■□□□ 1.8
SYNE3-202ENST00000553340 KIF21BO75037 1637 aa26.23■■□□□ 1.79
SYNE3-202ENST00000553340 PEG3Q9GZU2 1588 aa26.19■■□□□ 1.78
SYNE3-202ENST00000553340 CLIP1P30622 1438 aa26.17■■□□□ 1.78
SYNE3-202ENST00000553340 SYNJ1O43426 1573 aa26.16■■□□□ 1.78
SYNE3-202ENST00000553340 HNRNPUL2Q1KMD3 747 aaKnown RBP26.15■■□□□ 1.78
SYNE3-202ENST00000553340 VPS8Q8N3P4 1428 aa26.11■■□□□ 1.77
SYNE3-202ENST00000553340 BICRAQ9NZM4 1560 aa26.1■■□□□ 1.77
SYNE3-202ENST00000553340 BAZ1BQ9UIG0 1483 aaKnown RBP26.09■■□□□ 1.77
SYNE3-202ENST00000553340 PABPN1Q86U42 306 aaKnown RBP eCLIP26.08■■□□□ 1.77
SYNE3-202ENST00000553340 APLP2Q06481 763 aa26.06■■□□□ 1.76
SYNE3-202ENST00000553340 YTHDC1Q96MU7 727 aaKnown RBP26.05■■□□□ 1.76
SYNE3-202ENST00000553340 MIER1Q8N108 512 aa26.03■■□□□ 1.76
SYNE3-202ENST00000553340 RAPGEF2Q9Y4G8 1499 aa25.98■■□□□ 1.75
SYNE3-202ENST00000553340 MYT1Q01538 1121 aa25.95■■□□□ 1.74
SYNE3-202ENST00000553340 ATAD2BQ9ULI0 1458 aa25.93■■□□□ 1.74
SYNE3-202ENST00000553340 CLSPNQ9HAW4 1339 aa25.83■■□□□ 1.73
SYNE3-202ENST00000553340 TOP2BQ02880 1626 aa25.82■■□□□ 1.72
SYNE3-202ENST00000553340 RANGAP1P46060 587 aaPredicted RBP25.82■■□□□ 1.72
SYNE3-202ENST00000553340 ERICH3Q5RHP9 1530 aa25.74■■□□□ 1.71
SYNE3-202ENST00000553340 BIVM-ERCC5R4GMW8 1640 aa25.72■■□□□ 1.71
SYNE3-202ENST00000553340 DHX57Q6P158 1386 aaKnown RBP25.71■■□□□ 1.71
SYNE3-202ENST00000553340 PRXQ9BXM0 1461 aa25.69■■□□□ 1.7
SYNE3-202ENST00000553340 ARAP1Q96P48 1450 aa25.67■■□□□ 1.7
SYNE3-202ENST00000553340 KANK4Q5T7N3 995 aaPredicted RBP25.59■■□□□ 1.69
SYNE3-202ENST00000553340 RRBP1Q9P2E9 1410 aaKnown RBP25.57■■□□□ 1.68
SYNE3-202ENST00000553340 KIF27Q86VH2 1401 aa25.5■■□□□ 1.67
SYNE3-202ENST00000553340 CUX2O14529 1486 aa25.49■■□□□ 1.67
SYNE3-202ENST00000553340 CUX1P39880 1505 aa25.46■■□□□ 1.67
SYNE3-202ENST00000553340 CCNB3Q8WWL7 1395 aa25.44■■□□□ 1.66
SYNE3-202ENST00000553340 HMGXB3Q12766 1538 aa25.4■■□□□ 1.66
SYNE3-202ENST00000553340 ARHGAP35Q9NRY4 1499 aa25.38■■□□□ 1.65
SYNE3-202ENST00000553340 SUPT16HQ9Y5B9 1047 aaKnown RBP25.38■■□□□ 1.65
SYNE3-202ENST00000553340 NCAPD3P42695 1498 aa25.37■■□□□ 1.65
SYNE3-202ENST00000553340 ITGAEP38570 1179 aa25.29■■□□□ 1.64
SYNE3-202ENST00000553340 CFTRP13569 1480 aa25.28■■□□□ 1.64
SYNE3-202ENST00000553340 RAB3GAP2Q9H2M9 1393 aa25.25■■□□□ 1.63
SYNE3-202ENST00000553340 MAP3K1Q13233 1512 aa25.23■■□□□ 1.63
SYNE3-202ENST00000553340 MAPKBP1O60336 1514 aa25.21■■□□□ 1.63
SYNE3-202ENST00000553340 TIAM1Q13009 1591 aa25.2■■□□□ 1.63
SYNE3-202ENST00000553340 SETD5Q9C0A6 1442 aa25.15■■□□□ 1.62
SYNE3-202ENST00000553340 IGF1RP08069 1367 aa25.15■■□□□ 1.62
SYNE3-202ENST00000553340 LRRC9Q6ZRR7 1453 aa25.11■■□□□ 1.61
SYNE3-202ENST00000553340 PRDM2Q13029 1718 aa25.1■■□□□ 1.61
SYNE3-202ENST00000553340 CARMIL1Q5VZK9 1371 aa25.07■■□□□ 1.6
SYNE3-202ENST00000553340 KCNH8Q96L42 1107 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms