RNA–Protein interactions for RNA: ENST00000536782.2

TNFRSF1B-204, Transcript of TNF receptor superfamily member 1B, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1B, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-204ENST00000536782 NISCHQ9Y2I1 1504 aa49.19■■■■■ 5.47
TNFRSF1B-204ENST00000536782 ABCC9O60706 1549 aa44.24■■■■■ 4.67
TNFRSF1B-204ENST00000536782 CCDC180Q9P1Z9 1646 aa44.21■■■■■ 4.67
TNFRSF1B-204ENST00000536782 RB1CC1Q8TDY2 1594 aa42.05■■■■■ 4.32
TNFRSF1B-204ENST00000536782 NACADO15069 1562 aa41.76■■■■■ 4.28
TNFRSF1B-204ENST00000536782 DNAJC5BQ9UF47 199 aa41.66■■■■■ 4.26
TNFRSF1B-204ENST00000536782 DCAF8L2P0C7V8 631 aa41.51■■■■■ 4.24
TNFRSF1B-204ENST00000536782 UNC13AQ9UPW8 1703 aa41.32■■■■■ 4.2
TNFRSF1B-204ENST00000536782 MYO15BQ96JP2 1530 aa41.18■■■■■ 4.18
TNFRSF1B-204ENST00000536782 PABPN1Q86U42 306 aaKnown RBP eCLIP41.14■■■■■ 4.18
TNFRSF1B-204ENST00000536782 BICRAQ9NZM4 1560 aa40.97■■■■■ 4.15
TNFRSF1B-204ENST00000536782 ZCCHC6Q5VYS8 1495 aaKnown RBP40.77■■■■■ 4.12
TNFRSF1B-204ENST00000536782 DCAF1Q9Y4B6 1507 aa40.63■■■■■ 4.1
TNFRSF1B-204ENST00000536782 SHROOM4Q9ULL8 1493 aa40.26■■■■■ 4.04
TNFRSF1B-204ENST00000536782 SCRIBQ14160 1630 aa40.25■■■■■ 4.03
TNFRSF1B-204ENST00000536782 CC2D2AQ9P2K1 1620 aa40.01■■■■■ 4
TNFRSF1B-204ENST00000536782 EIF4G1Q04637 1599 aaKnown RBP39.89■■■■□ 3.98
TNFRSF1B-204ENST00000536782 CECR2Q9BXF3 1484 aa39.84■■■■□ 3.97
TNFRSF1B-204ENST00000536782 NCAPD3P42695 1498 aa38.57■■■■□ 3.76
TNFRSF1B-204ENST00000536782 ATAD2BQ9ULI0 1458 aa38.45■■■■□ 3.75
TNFRSF1B-204ENST00000536782 SMARCA4P51532 1647 aa38.42■■■■□ 3.74
TNFRSF1B-204ENST00000536782 SMARCA2P51531 1590 aa38.29■■■■□ 3.72
TNFRSF1B-204ENST00000536782 HMGXB3Q12766 1538 aa38.28■■■■□ 3.72
TNFRSF1B-204ENST00000536782 DNAJC5Q9H3Z4 198 aa38.22■■■■□ 3.71
TNFRSF1B-204ENST00000536782 BAZ1AQ9NRL2 1556 aaPredicted RBP38.16■■■■□ 3.7
TNFRSF1B-204ENST00000536782 CUX2O14529 1486 aa38.13■■■■□ 3.69
TNFRSF1B-204ENST00000536782 ERCC6Q03468 1493 aa38.1■■■■□ 3.69
TNFRSF1B-204ENST00000536782 PEG3Q9GZU2 1588 aa38.06■■■■□ 3.68
TNFRSF1B-204ENST00000536782 NESP48681 1621 aa38.04■■■■□ 3.68
TNFRSF1B-204ENST00000536782 BAZ1BQ9UIG0 1483 aaKnown RBP38.02■■■■□ 3.68
TNFRSF1B-204ENST00000536782 MROH2BQ7Z745 1585 aa37.93■■■■□ 3.66
TNFRSF1B-204ENST00000536782 THOC2Q8NI27 1593 aaKnown RBP37.7■■■■□ 3.63
TNFRSF1B-204ENST00000536782 LAMC3Q9Y6N6 1575 aa37.7■■■■□ 3.63
TNFRSF1B-204ENST00000536782 KIF21AQ7Z4S6 1674 aa37.59■■■■□ 3.61
TNFRSF1B-204ENST00000536782 WIZO95785 1651 aa37.5■■■■□ 3.59
TNFRSF1B-204ENST00000536782 PDS5BQ9NTI5 1447 aa37.41■■■■□ 3.58
TNFRSF1B-204ENST00000536782 CADPSQ9ULU8 1353 aa37.35■■■■□ 3.57
TNFRSF1B-204ENST00000536782 MRC2Q9UBG0 1479 aa37.15■■■■□ 3.54
TNFRSF1B-204ENST00000536782 RSF1Q96T23 1441 aaPredicted RBP37.13■■■■□ 3.53
TNFRSF1B-204ENST00000536782 WDR62O43379 1518 aa37.11■■■■□ 3.53
TNFRSF1B-204ENST00000536782 TOP2AP11388 1531 aaKnown RBP36.96■■■■□ 3.51
TNFRSF1B-204ENST00000536782 CEP164Q9UPV0 1460 aa36.96■■■■□ 3.51
TNFRSF1B-204ENST00000536782 CFTRP13569 1480 aa36.94■■■■□ 3.5
TNFRSF1B-204ENST00000536782 FANCD2Q9BXW9 1451 aa36.94■■■■□ 3.5
TNFRSF1B-204ENST00000536782 URB2Q14146 1524 aaKnown RBP36.71■■■■□ 3.47
TNFRSF1B-204ENST00000536782 PRDM2Q13029 1718 aa36.68■■■■□ 3.46
TNFRSF1B-204ENST00000536782 CCDC88BA6NC98 1476 aa36.56■■■■□ 3.44
TNFRSF1B-204ENST00000536782 TRIM41Q8WV44 630 aa36.43■■■■□ 3.42
TNFRSF1B-204ENST00000536782 OSCARQ8IYS5 282 aa36.32■■■■□ 3.4
TNFRSF1B-204ENST00000536782 TOPBP1Q92547 1522 aa36.27■■■■□ 3.4
TNFRSF1B-204ENST00000536782 ZNF608Q9ULD9 1512 aaPredicted RBP36.26■■■■□ 3.4
TNFRSF1B-204ENST00000536782 IFT140Q96RY7 1462 aa36.23■■■■□ 3.39
TNFRSF1B-204ENST00000536782 ABCC8Q09428 1581 aa36.14■■■■□ 3.38
TNFRSF1B-204ENST00000536782 DNMBPQ6XZF7 1577 aa36.12■■■■□ 3.37
TNFRSF1B-204ENST00000536782 EIF4G3O43432 1585 aaKnown RBP36.06■■■■□ 3.36
TNFRSF1B-204ENST00000536782 TARBP1Q13395 1621 aaKnown RBP36.01■■■■□ 3.36
TNFRSF1B-204ENST00000536782 RIMBP3CA6NJZ7 1639 aa35.99■■■■□ 3.35
TNFRSF1B-204ENST00000536782 RIMBP3BA6NNM3 1639 aa35.99■■■■□ 3.35
TNFRSF1B-204ENST00000536782 RIMBP3Q9UFD9 1639 aa35.99■■■■□ 3.35
TNFRSF1B-204ENST00000536782 AQRO60306 1485 aaKnown RBP eCLIP35.89■■■■□ 3.346e-9■■■■■ 46.7
TNFRSF1B-204ENST00000536782 POLA1P09884 1462 aaPredicted RBP35.89■■■■□ 3.34
TNFRSF1B-204ENST00000536782 CHD1O14646 1710 aa35.86■■■■□ 3.33
TNFRSF1B-204ENST00000536782 ARHGEF11O15085 1522 aa35.83■■■■□ 3.33
TNFRSF1B-204ENST00000536782 RAD54L2Q9Y4B4 1467 aa35.77■■■■□ 3.32
TNFRSF1B-204ENST00000536782 SOGA1O94964 1423 aa35.67■■■■□ 3.3
TNFRSF1B-204ENST00000536782 CUX1P39880 1505 aa35.65■■■■□ 3.3
TNFRSF1B-204ENST00000536782 FGD5Q6ZNL6 1462 aa35.64■■■■□ 3.3
TNFRSF1B-204ENST00000536782 TDRD9Q8NDG6 1382 aaKnown RBP35.63■■■■□ 3.29
TNFRSF1B-204ENST00000536782 FBLN2P98095 1184 aa35.58■■■■□ 3.29
TNFRSF1B-204ENST00000536782 SUPT5HO00267 1087 aaKnown RBP35.57■■■■□ 3.28
TNFRSF1B-204ENST00000536782 WDR97A6NE52 1622 aa35.56■■■■□ 3.28
TNFRSF1B-204ENST00000536782 SNAPC4Q5SXM2 1469 aa35.5■■■■□ 3.27
TNFRSF1B-204ENST00000536782 ARAP1Q96P48 1450 aa35.49■■■■□ 3.27
TNFRSF1B-204ENST00000536782 CYB5RLQ6IPT4 315 aa35.49■■■■□ 3.27
TNFRSF1B-204ENST00000536782 CLASP1Q7Z460 1538 aa35.41■■■■□ 3.26
TNFRSF1B-204ENST00000536782 MAGI1Q96QZ7 1491 aaPredicted RBP35.39■■■■□ 3.26
TNFRSF1B-204ENST00000536782 GRIN2BQ13224 1484 aa35.37■■■■□ 3.25
TNFRSF1B-204ENST00000536782 PBRM1Q86U86 1689 aa35.34■■■■□ 3.25
TNFRSF1B-204ENST00000536782 CHMP7Q8WUX9 453 aaPredicted RBP35.33■■■■□ 3.25
TNFRSF1B-204ENST00000536782 SYNJ1O43426 1573 aa35.29■■■■□ 3.24
TNFRSF1B-204ENST00000536782 SYNJ2O15056 1496 aa35.28■■■■□ 3.24
TNFRSF1B-204ENST00000536782 GAPVD1Q14C86 1478 aa35.25■■■■□ 3.23
TNFRSF1B-204ENST00000536782 ABCA5Q8WWZ7 1642 aa35.24■■■■□ 3.23
TNFRSF1B-204ENST00000536782 ABCA10Q8WWZ4 1543 aa35.24■■■■□ 3.23
TNFRSF1B-204ENST00000536782 WRNQ14191 1432 aaPredicted RBP eCLIP35.1■■■■□ 3.21
TNFRSF1B-204ENST00000536782 BIVM-ERCC5R4GMW8 1640 aa35.07■■■■□ 3.21
TNFRSF1B-204ENST00000536782 TRHP20396 242 aaPredicted RBP35.05■■■■□ 3.2
TNFRSF1B-204ENST00000536782 TOP2BQ02880 1626 aa35.03■■■■□ 3.2
TNFRSF1B-204ENST00000536782 ADAMTS12P58397 1594 aa34.96■■■■□ 3.19
TNFRSF1B-204ENST00000536782 GRIN2AQ12879 1464 aa34.95■■■■□ 3.19
TNFRSF1B-204ENST00000536782 ERCC6L2Q5T890 1561 aa34.89■■■■□ 3.18
TNFRSF1B-204ENST00000536782 CEP170Q5SW79 1584 aa34.88■■■■□ 3.17
TNFRSF1B-204ENST00000536782 NUP160Q12769 1436 aa34.86■■■■□ 3.17
TNFRSF1B-204ENST00000536782 FHAD1B1AJZ9 1412 aa34.8■■■■□ 3.16
TNFRSF1B-204ENST00000536782 ERICH3Q5RHP9 1530 aa34.78■■■■□ 3.16
TNFRSF1B-204ENST00000536782 SHROOM2Q13796 1616 aa34.77■■■■□ 3.16
TNFRSF1B-204ENST00000536782 PRG4Q92954 1404 aaPredicted RBP34.47■■■■□ 3.11
TNFRSF1B-204ENST00000536782 RUSC2Q8N2Y8 1516 aa34.47■■■■□ 3.11
TNFRSF1B-204ENST00000536782 JPH4Q96JJ6 628 aa34.44■■■■□ 3.1
TNFRSF1B-204ENST00000536782 KIF13AQ9H1H9 1805 aa34.4■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms