RNA–Protein interactions for RNA: ENST00000418224.7

PMS1-206, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 5 BASIC

Gene PMS1, Length 3,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-206ENST00000418224 NISCHQ9Y2I1 1504 aa34.08■■■■□ 3.05
PMS1-206ENST00000418224 SHROOM4Q9ULL8 1493 aa29.82■■■□□ 2.36
PMS1-206ENST00000418224 HRCP23327 699 aa29.54■■■□□ 2.32
PMS1-206ENST00000418224 SUPT5HO00267 1087 aaKnown RBP29.47■■■□□ 2.31
PMS1-206ENST00000418224 PPARGC1BQ86YN6 1023 aaKnown RBP29.12■■■□□ 2.25
PMS1-206ENST00000418224 PCGF6Q9BYE7 350 aa28.99■■■□□ 2.23
PMS1-206ENST00000418224 ZCCHC6Q5VYS8 1495 aaKnown RBP28.86■■■□□ 2.21
PMS1-206ENST00000418224 PELP1Q8IZL8 1130 aaKnown RBP28.79■■■□□ 2.2
PMS1-206ENST00000418224 DCAF8L2P0C7V8 631 aa28.72■■■□□ 2.19
PMS1-206ENST00000418224 CHIC1Q5VXU3 224 aa28.64■■■□□ 2.18
PMS1-206ENST00000418224 MYO15BQ96JP2 1530 aa28.6■■■□□ 2.17
PMS1-206ENST00000418224 CCDC180Q9P1Z9 1646 aa28.58■■■□□ 2.17
PMS1-206ENST00000418224 SCAF1Q9H7N4 1312 aaKnown RBP28.16■■■□□ 2.1
PMS1-206ENST00000418224 LOC105371045A0A1W2PR82 267 aa27.97■■■□□ 2.07
PMS1-206ENST00000418224 TRIM26Q12899 539 aaPredicted RBP27.81■■■□□ 2.04
PMS1-206ENST00000418224 DCAF1Q9Y4B6 1507 aa27.79■■■□□ 2.04
PMS1-206ENST00000418224 MYT1Q01538 1121 aa27.68■■■□□ 2.02
PMS1-206ENST00000418224 ZEB1P37275 1124 aaPredicted RBP27.61■■■□□ 2.01
PMS1-206ENST00000418224 ACIN1Q9UKV3 1341 aaKnown RBP27.36■■□□□ 1.97
PMS1-206ENST00000418224 NEUROD1Q13562 356 aa27.34■■□□□ 1.97
PMS1-206ENST00000418224 ABCC9O60706 1549 aa27.31■■□□□ 1.96
PMS1-206ENST00000418224 TRIM41Q8WV44 630 aa27.3■■□□□ 1.96
PMS1-206ENST00000418224 FAM9AQ8IZU1 332 aaPredicted RBP27.29■■□□□ 1.96
PMS1-206ENST00000418224 GTF3C3Q9Y5Q9 886 aa27.25■■□□□ 1.95
PMS1-206ENST00000418224 RSF1Q96T23 1441 aaPredicted RBP27.21■■□□□ 1.95
PMS1-206ENST00000418224 EHMT2Q96KQ7 1210 aa27.21■■□□□ 1.95
PMS1-206ENST00000418224 SCRIBQ14160 1630 aa27.19■■□□□ 1.94
PMS1-206ENST00000418224 RB1CC1Q8TDY2 1594 aa27.01■■□□□ 1.91
PMS1-206ENST00000418224 CENPBP07199 599 aaPredicted RBP26.99■■□□□ 1.91
PMS1-206ENST00000418224 DIEXFQ68CQ4 756 aaKnown RBP26.81■■□□□ 1.88
PMS1-206ENST00000418224 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.78■■□□□ 1.88
PMS1-206ENST00000418224 CCER1Q8TC90 406 aaPredicted RBP26.72■■□□□ 1.87
PMS1-206ENST00000418224 CECR2Q9BXF3 1484 aa26.7■■□□□ 1.86
PMS1-206ENST00000418224 MROH2BQ7Z745 1585 aa26.6■■□□□ 1.85
PMS1-206ENST00000418224 YTHDC1Q96MU7 727 aaKnown RBP26.6■■□□□ 1.85
PMS1-206ENST00000418224 WIZO95785 1651 aa26.48■■□□□ 1.83
PMS1-206ENST00000418224 NACADO15069 1562 aa26.42■■□□□ 1.82
PMS1-206ENST00000418224 TTBK1Q5TCY1 1321 aaPredicted RBP26.42■■□□□ 1.82
PMS1-206ENST00000418224 BAZ1AQ9NRL2 1556 aaPredicted RBP26.23■■□□□ 1.79
PMS1-206ENST00000418224 ZNF316A6NFI3 1004 aaPredicted RBP26.17■■□□□ 1.78
PMS1-206ENST00000418224 ABCC8Q09428 1581 aa26.13■■□□□ 1.77
PMS1-206ENST00000418224 MIER1Q8N108 512 aa26.12■■□□□ 1.77
PMS1-206ENST00000418224 EIF4G1Q04637 1599 aaKnown RBP26.1■■□□□ 1.77
PMS1-206ENST00000418224 CCDC88BA6NC98 1476 aa26.1■■□□□ 1.77
PMS1-206ENST00000418224 BCL11AQ9H165 835 aa26.09■■□□□ 1.77
PMS1-206ENST00000418224 CEP162Q5TB80 1403 aa26.05■■□□□ 1.76
PMS1-206ENST00000418224 UBTFP17480 764 aaKnown RBP26.02■■□□□ 1.76
PMS1-206ENST00000418224 SOGA1O94964 1423 aa25.99■■□□□ 1.75
PMS1-206ENST00000418224 WRNQ14191 1432 aaPredicted RBP eCLIP25.97■■□□□ 1.75
PMS1-206ENST00000418224 TOP2AP11388 1531 aaKnown RBP25.96■■□□□ 1.75
PMS1-206ENST00000418224 ANP32EQ9BTT0 268 aa25.92■■□□□ 1.74
PMS1-206ENST00000418224 CSRNP3Q8WYN3 585 aa25.91■■□□□ 1.74
PMS1-206ENST00000418224 TNIKQ9UKE5 1360 aa25.9■■□□□ 1.74
PMS1-206ENST00000418224 SMARCA2P51531 1590 aa25.86■■□□□ 1.73
PMS1-206ENST00000418224 SMARCA4P51532 1647 aa25.85■■□□□ 1.73
PMS1-206ENST00000418224 RUSC2Q8N2Y8 1516 aa25.84■■□□□ 1.73
PMS1-206ENST00000418224 SUPT16HQ9Y5B9 1047 aaKnown RBP25.79■■□□□ 1.72
PMS1-206ENST00000418224 TSHZ2Q9NRE2 1034 aa25.75■■□□□ 1.71
PMS1-206ENST00000418224 EEA1Q15075 1411 aa25.74■■□□□ 1.71
PMS1-206ENST00000418224 HNRNPUL2Q1KMD3 747 aaKnown RBP25.74■■□□□ 1.71
PMS1-206ENST00000418224 GOLGA3Q08378 1498 aa25.69■■□□□ 1.7
PMS1-206ENST00000418224 PABPN1Q86U42 306 aaKnown RBP eCLIP25.62■■□□□ 1.69
PMS1-206ENST00000418224 RANGAP1P46060 587 aaPredicted RBP25.59■■□□□ 1.69
PMS1-206ENST00000418224 UNC13AQ9UPW8 1703 aa25.54■■□□□ 1.68
PMS1-206ENST00000418224 APLP2Q06481 763 aa25.53■■□□□ 1.68
PMS1-206ENST00000418224 CLIP1P30622 1438 aa25.5■■□□□ 1.67
PMS1-206ENST00000418224 CLSPNQ9HAW4 1339 aa25.49■■□□□ 1.67
PMS1-206ENST00000418224 CEP164Q9UPV0 1460 aa25.48■■□□□ 1.67
PMS1-206ENST00000418224 BCANQ96GW7 911 aa25.43■■□□□ 1.66
PMS1-206ENST00000418224 SYNJ1O43426 1573 aa25.4■■□□□ 1.66
PMS1-206ENST00000418224 VPS8Q8N3P4 1428 aa25.37■■□□□ 1.65
PMS1-206ENST00000418224 KIF21BO75037 1637 aa25.34■■□□□ 1.65
PMS1-206ENST00000418224 RAPGEF2Q9Y4G8 1499 aa25.3■■□□□ 1.64
PMS1-206ENST00000418224 BICRAQ9NZM4 1560 aa25.23■■□□□ 1.63
PMS1-206ENST00000418224 BAZ1BQ9UIG0 1483 aaKnown RBP25.2■■□□□ 1.62
PMS1-206ENST00000418224 PEG3Q9GZU2 1588 aa25.18■■□□□ 1.62
PMS1-206ENST00000418224 FKBP8Q14318 412 aa25.15■■□□□ 1.62
PMS1-206ENST00000418224 RBM19Q9Y4C8 960 aaKnown RBP25.15■■□□□ 1.62
PMS1-206ENST00000418224 ATAD2BQ9ULI0 1458 aa25.14■■□□□ 1.61
PMS1-206ENST00000418224 PRKCSHP14314 528 aaPredicted RBP25.14■■□□□ 1.61
PMS1-206ENST00000418224 KCNH8Q96L42 1107 aa25.1■■□□□ 1.61
PMS1-206ENST00000418224 DHX57Q6P158 1386 aaKnown RBP25.04■■□□□ 1.6
PMS1-206ENST00000418224 KANK4Q5T7N3 995 aaPredicted RBP25.04■■□□□ 1.6
PMS1-206ENST00000418224 ITGAEP38570 1179 aa25.01■■□□□ 1.59
PMS1-206ENST00000418224 TOP2BQ02880 1626 aa24.96■■□□□ 1.59
PMS1-206ENST00000418224 MSH5O43196 834 aa24.94■■□□□ 1.58
PMS1-206ENST00000418224 ARAP1Q96P48 1450 aa24.94■■□□□ 1.58
PMS1-206ENST00000418224 NEFLP07196 543 aa24.9■■□□□ 1.58
PMS1-206ENST00000418224 PRXQ9BXM0 1461 aa24.88■■□□□ 1.57
PMS1-206ENST00000418224 ERICH6Q7L0X2 663 aa24.86■■□□□ 1.57
PMS1-206ENST00000418224 ERICH3Q5RHP9 1530 aa24.85■■□□□ 1.57
PMS1-206ENST00000418224 BIVM-ERCC5R4GMW8 1640 aa24.8■■□□□ 1.56
PMS1-206ENST00000418224 CCNB3Q8WWL7 1395 aa24.78■■□□□ 1.56
PMS1-206ENST00000418224 RRBP1Q9P2E9 1410 aaKnown RBP24.77■■□□□ 1.56
PMS1-206ENST00000418224 KIF27Q86VH2 1401 aa24.76■■□□□ 1.55
PMS1-206ENST00000418224 TRIM52Q96A61 297 aa24.71■■□□□ 1.55
PMS1-206ENST00000418224 CUX1P39880 1505 aa24.71■■□□□ 1.55
PMS1-206ENST00000418224 ARHGAP35Q9NRY4 1499 aa24.67■■□□□ 1.54
PMS1-206ENST00000418224 DDX10Q13206 875 aaKnown RBP24.67■■□□□ 1.54
PMS1-206ENST00000418224 RAB3GAP2Q9H2M9 1393 aa24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms