RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 NISCHQ9Y2I1 1504 aa40.43■■■■■ 4.06
CCDC43-201ENST00000315286 CCDC180Q9P1Z9 1646 aa34.91■■■■□ 3.18
CCDC43-201ENST00000315286 ZCCHC6Q5VYS8 1495 aaKnown RBP34.04■■■■□ 3.04
CCDC43-201ENST00000315286 SHROOM4Q9ULL8 1493 aa33.53■■■□□ 2.96
CCDC43-201ENST00000315286 DCAF8L2P0C7V8 631 aa33.46■■■□□ 2.95
CCDC43-201ENST00000315286 DCAF1Q9Y4B6 1507 aa33.32■■■□□ 2.92
CCDC43-201ENST00000315286 ABCC9O60706 1549 aa32.81■■■□□ 2.84
CCDC43-201ENST00000315286 MYO15BQ96JP2 1530 aa32.72■■■□□ 2.83
CCDC43-201ENST00000315286 SUPT5HO00267 1087 aaKnown RBP32.5■■■□□ 2.79
CCDC43-201ENST00000315286 NACADO15069 1562 aa32.44■■■□□ 2.78
CCDC43-201ENST00000315286 SCRIBQ14160 1630 aa32.35■■■□□ 2.77
CCDC43-201ENST00000315286 RB1CC1Q8TDY2 1594 aa32.07■■■□□ 2.72
CCDC43-201ENST00000315286 RSF1Q96T23 1441 aaPredicted RBP31.6■■■□□ 2.65
CCDC43-201ENST00000315286 UNC13AQ9UPW8 1703 aa31.54■■■□□ 2.64
CCDC43-201ENST00000315286 CECR2Q9BXF3 1484 aa31.48■■■□□ 2.63
CCDC43-201ENST00000315286 MROH2BQ7Z745 1585 aa31.32■■■□□ 2.6
CCDC43-201ENST00000315286 CHIC1Q5VXU3 224 aa31.3■■■□□ 2.6
CCDC43-201ENST00000315286 BICRAQ9NZM4 1560 aa31.18■■■□□ 2.58
CCDC43-201ENST00000315286 BAZ1AQ9NRL2 1556 aaPredicted RBP31.14■■■□□ 2.58
CCDC43-201ENST00000315286 PABPN1Q86U42 306 aaKnown RBP eCLIP31.12■■■□□ 2.57
CCDC43-201ENST00000315286 WIZO95785 1651 aa31.1■■■□□ 2.57
CCDC43-201ENST00000315286 SMARCA4P51532 1647 aa30.98■■■□□ 2.55
CCDC43-201ENST00000315286 TOP2AP11388 1531 aaKnown RBP30.69■■■□□ 2.5
CCDC43-201ENST00000315286 PEG3Q9GZU2 1588 aa30.51■■■□□ 2.47
CCDC43-201ENST00000315286 CCDC88BA6NC98 1476 aa30.47■■■□□ 2.47
CCDC43-201ENST00000315286 SMARCA2P51531 1590 aa30.47■■■□□ 2.47
CCDC43-201ENST00000315286 TRIM41Q8WV44 630 aa30.45■■■□□ 2.46
CCDC43-201ENST00000315286 EIF4G1Q04637 1599 aaKnown RBP30.38■■■□□ 2.45
CCDC43-201ENST00000315286 ATAD2BQ9ULI0 1458 aa30.37■■■□□ 2.45
CCDC43-201ENST00000315286 LOC105371045A0A1W2PR82 267 aa30.23■■■□□ 2.43
CCDC43-201ENST00000315286 BAZ1BQ9UIG0 1483 aaKnown RBP30.22■■■□□ 2.43
CCDC43-201ENST00000315286 ABCC8Q09428 1581 aa30.03■■■□□ 2.4
CCDC43-201ENST00000315286 FAM9AQ8IZU1 332 aaPredicted RBP30.02■■■□□ 2.4
CCDC43-201ENST00000315286 NCAPD3P42695 1498 aa29.99■■■□□ 2.39
CCDC43-201ENST00000315286 HMGXB3Q12766 1538 aa29.93■■■□□ 2.38
CCDC43-201ENST00000315286 WRNQ14191 1432 aaPredicted RBP eCLIP29.71■■■□□ 2.35
CCDC43-201ENST00000315286 EHMT2Q96KQ7 1210 aa29.65■■■□□ 2.34
CCDC43-201ENST00000315286 CC2D2AQ9P2K1 1620 aa29.64■■■□□ 2.34
CCDC43-201ENST00000315286 SYNJ1O43426 1573 aa29.59■■■□□ 2.33
CCDC43-201ENST00000315286 SOGA1O94964 1423 aa29.58■■■□□ 2.33
CCDC43-201ENST00000315286 CFTRP13569 1480 aa29.47■■■□□ 2.31
CCDC43-201ENST00000315286 RUSC2Q8N2Y8 1516 aa29.47■■■□□ 2.31
CCDC43-201ENST00000315286 EEA1Q15075 1411 aa29.45■■■□□ 2.3
CCDC43-201ENST00000315286 CSRNP3Q8WYN3 585 aa29.38■■■□□ 2.29
CCDC43-201ENST00000315286 TOP2BQ02880 1626 aa29.38■■■□□ 2.29
CCDC43-201ENST00000315286 PCGF6Q9BYE7 350 aa29.32■■■□□ 2.28
CCDC43-201ENST00000315286 BIVM-ERCC5R4GMW8 1640 aa29.32■■■□□ 2.28
CCDC43-201ENST00000315286 CADPSQ9ULU8 1353 aa29.29■■■□□ 2.28
CCDC43-201ENST00000315286 PRDM2Q13029 1718 aa29.29■■■□□ 2.28
CCDC43-201ENST00000315286 CUX1P39880 1505 aa29.23■■■□□ 2.27
CCDC43-201ENST00000315286 TNIKQ9UKE5 1360 aa29.15■■■□□ 2.26
CCDC43-201ENST00000315286 GOLGA3Q08378 1498 aa29.13■■■□□ 2.25
CCDC43-201ENST00000315286 TRIM26Q12899 539 aaPredicted RBP29.1■■■□□ 2.25
CCDC43-201ENST00000315286 UBTFP17480 764 aaKnown RBP29.09■■■□□ 2.25
CCDC43-201ENST00000315286 KIF21BO75037 1637 aa29.07■■■□□ 2.24
CCDC43-201ENST00000315286 CEP164Q9UPV0 1460 aa29.07■■■□□ 2.24
CCDC43-201ENST00000315286 CEP162Q5TB80 1403 aa29.06■■■□□ 2.24
CCDC43-201ENST00000315286 FANCD2Q9BXW9 1451 aa28.98■■■□□ 2.23
CCDC43-201ENST00000315286 NESP48681 1621 aa28.97■■■□□ 2.23
CCDC43-201ENST00000315286 DNAJC5BQ9UF47 199 aa28.95■■■□□ 2.22
CCDC43-201ENST00000315286 RAPGEF2Q9Y4G8 1499 aa28.93■■■□□ 2.22
CCDC43-201ENST00000315286 KIF27Q86VH2 1401 aa28.9■■■□□ 2.22
CCDC43-201ENST00000315286 LAMC3Q9Y6N6 1575 aa28.86■■■□□ 2.21
CCDC43-201ENST00000315286 FGD5Q6ZNL6 1462 aa28.84■■■□□ 2.21
CCDC43-201ENST00000315286 PRXQ9BXM0 1461 aa28.83■■■□□ 2.21
CCDC43-201ENST00000315286 PPARGC1BQ86YN6 1023 aaKnown RBP28.82■■■□□ 2.2
CCDC43-201ENST00000315286 HRCP23327 699 aa28.8■■■□□ 2.2
CCDC43-201ENST00000315286 ERICH3Q5RHP9 1530 aa28.77■■■□□ 2.2
CCDC43-201ENST00000315286 DNMBPQ6XZF7 1577 aa28.76■■■□□ 2.19
CCDC43-201ENST00000315286 CUX2O14529 1486 aa28.75■■■□□ 2.19
CCDC43-201ENST00000315286 CLIP1P30622 1438 aa28.72■■■□□ 2.19
CCDC43-201ENST00000315286 TOPBP1Q92547 1522 aa28.72■■■□□ 2.19
CCDC43-201ENST00000315286 PDS5BQ9NTI5 1447 aa28.65■■■□□ 2.18
CCDC43-201ENST00000315286 IGF1RP08069 1367 aa28.65■■■□□ 2.18
CCDC43-201ENST00000315286 POLA1P09884 1462 aaPredicted RBP28.62■■■□□ 2.17
CCDC43-201ENST00000315286 URB2Q14146 1524 aaKnown RBP28.61■■■□□ 2.17
CCDC43-201ENST00000315286 RAD54L2Q9Y4B4 1467 aa28.6■■■□□ 2.17
CCDC43-201ENST00000315286 RANGAP1P46060 587 aaPredicted RBP28.6■■■□□ 2.17
CCDC43-201ENST00000315286 KIF21AQ7Z4S6 1674 aa28.56■■■□□ 2.16
CCDC43-201ENST00000315286 ABCA10Q8WWZ4 1543 aa28.54■■■□□ 2.16
CCDC43-201ENST00000315286 VPS8Q8N3P4 1428 aa28.51■■■□□ 2.15
CCDC43-201ENST00000315286 CARMIL1Q5VZK9 1371 aa28.5■■■□□ 2.15
CCDC43-201ENST00000315286 TTBK1Q5TCY1 1321 aaPredicted RBP28.49■■■□□ 2.15
CCDC43-201ENST00000315286 WDR97A6NE52 1622 aa28.39■■■□□ 2.13
CCDC43-201ENST00000315286 ARAP1Q96P48 1450 aa28.38■■■□□ 2.13
CCDC43-201ENST00000315286 TDRD9Q8NDG6 1382 aaKnown RBP28.29■■■□□ 2.12
CCDC43-201ENST00000315286 ARHGAP35Q9NRY4 1499 aa28.29■■■□□ 2.12
CCDC43-201ENST00000315286 APLP2Q06481 763 aa28.28■■■□□ 2.12
CCDC43-201ENST00000315286 CUL7Q14999 1698 aa28.27■■■□□ 2.12
CCDC43-201ENST00000315286 ABCA5Q8WWZ7 1642 aa28.27■■■□□ 2.12
CCDC43-201ENST00000315286 MRC2Q9UBG0 1479 aa28.26■■■□□ 2.11
CCDC43-201ENST00000315286 TARBP1Q13395 1621 aaKnown RBP28.24■■■□□ 2.11
CCDC43-201ENST00000315286 GAPVD1Q14C86 1478 aa28.22■■■□□ 2.11
CCDC43-201ENST00000315286 ZEB1P37275 1124 aaPredicted RBP28.11■■■□□ 2.09
CCDC43-201ENST00000315286 WDR62O43379 1518 aa28.08■■■□□ 2.09
CCDC43-201ENST00000315286 CTTNBP2Q8WZ74 1663 aa28.06■■■□□ 2.08
CCDC43-201ENST00000315286 KANK4Q5T7N3 995 aaPredicted RBP28.03■■■□□ 2.08
CCDC43-201ENST00000315286 AQRO60306 1485 aaKnown RBP eCLIP28.02■■■□□ 2.08
CCDC43-201ENST00000315286 ERCC6Q03468 1493 aa28.02■■■□□ 2.08
CCDC43-201ENST00000315286 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms