RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 DCAF8L2P0C7V8 631 aa30.48■■■□□ 2.47
PHRF1-202ENST00000413872 NISCHQ9Y2I1 1504 aa29.91■■■□□ 2.38
PHRF1-202ENST00000413872 SUPT5HO00267 1087 aaKnown RBP28.64■■■□□ 2.18
PHRF1-202ENST00000413872 SHROOM4Q9ULL8 1493 aa28.26■■■□□ 2.11
PHRF1-202ENST00000413872 APLP2Q06481 763 aa27.38■■□□□ 1.97
PHRF1-202ENST00000413872 EHMT2Q96KQ7 1210 aa27.34■■□□□ 1.97
PHRF1-202ENST00000413872 FAM9AQ8IZU1 332 aaPredicted RBP27.34■■□□□ 1.97
PHRF1-202ENST00000413872 TRIM41Q8WV44 630 aa26.75■■□□□ 1.87
PHRF1-202ENST00000413872 PELP1Q8IZL8 1130 aaKnown RBP26.57■■□□□ 1.84
PHRF1-202ENST00000413872 RANGAP1P46060 587 aaPredicted RBP26.42■■□□□ 1.82
PHRF1-202ENST00000413872 UBTFP17480 764 aaKnown RBP26.4■■□□□ 1.82
PHRF1-202ENST00000413872 TTBK1Q5TCY1 1321 aaPredicted RBP26.4■■□□□ 1.82
PHRF1-202ENST00000413872 ATP1B4Q9UN42 357 aaPredicted RBP26.36■■□□□ 1.81
PHRF1-202ENST00000413872 PCGF6Q9BYE7 350 aa26.23■■□□□ 1.79
PHRF1-202ENST00000413872 ZEB1P37275 1124 aaPredicted RBP26.15■■□□□ 1.78
PHRF1-202ENST00000413872 CCER1Q8TC90 406 aaPredicted RBP26.02■■□□□ 1.76
PHRF1-202ENST00000413872 ABCC9O60706 1549 aa25.84■■□□□ 1.73
PHRF1-202ENST00000413872 CENPBP07199 599 aaPredicted RBP25.71■■□□□ 1.71
PHRF1-202ENST00000413872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.63■■□□□ 1.69
PHRF1-202ENST00000413872 HNRNPUL2Q1KMD3 747 aaKnown RBP25.63■■□□□ 1.69
PHRF1-202ENST00000413872 PABPN1Q86U42 306 aaKnown RBP eCLIP25.54■■□□□ 1.68
PHRF1-202ENST00000413872 MYT1LQ9UL68 1186 aa25.52■■□□□ 1.68
PHRF1-202ENST00000413872 TRIM26Q12899 539 aaPredicted RBP25.48■■□□□ 1.67
PHRF1-202ENST00000413872 CHIC1Q5VXU3 224 aa25.48■■□□□ 1.67
PHRF1-202ENST00000413872 PPARGC1BQ86YN6 1023 aaKnown RBP25.41■■□□□ 1.66
PHRF1-202ENST00000413872 ITGAEP38570 1179 aa25.3■■□□□ 1.64
PHRF1-202ENST00000413872 NEFLP07196 543 aa25.3■■□□□ 1.64
PHRF1-202ENST00000413872 LOC105371045A0A1W2PR82 267 aa25.21■■□□□ 1.63
PHRF1-202ENST00000413872 ERICH6Q7L0X2 663 aa25.19■■□□□ 1.62
PHRF1-202ENST00000413872 YTHDC1Q96MU7 727 aaKnown RBP24.97■■□□□ 1.59
PHRF1-202ENST00000413872 POLR3GLQ9BT43 218 aa24.95■■□□□ 1.59
PHRF1-202ENST00000413872 FAM50AQ14320 339 aaKnown RBP24.87■■□□□ 1.57
PHRF1-202ENST00000413872 FBLN2P98095 1184 aa24.83■■□□□ 1.57
PHRF1-202ENST00000413872 HRCP23327 699 aa24.79■■□□□ 1.56
PHRF1-202ENST00000413872 SCRIBQ14160 1630 aa24.75■■□□□ 1.55
PHRF1-202ENST00000413872 CCDC180Q9P1Z9 1646 aa24.75■■□□□ 1.55
PHRF1-202ENST00000413872 ZCCHC6Q5VYS8 1495 aaKnown RBP24.73■■□□□ 1.55
PHRF1-202ENST00000413872 TRIM52Q96A61 297 aa24.72■■□□□ 1.55
PHRF1-202ENST00000413872 SLC4A1APQ9BWU0 796 aaKnown RBP24.64■■□□□ 1.53
PHRF1-202ENST00000413872 CSRNP3Q8WYN3 585 aa24.63■■□□□ 1.53
PHRF1-202ENST00000413872 CDK11AQ9UQ88 783 aaPredicted RBP24.51■■□□□ 1.51
PHRF1-202ENST00000413872 CNGB1Q14028 1251 aaPredicted RBP24.49■■□□□ 1.51
PHRF1-202ENST00000413872 DAXXQ9UER7 740 aaPredicted RBP24.46■■□□□ 1.51
PHRF1-202ENST00000413872 RB1CC1Q8TDY2 1594 aa24.41■■□□□ 1.5
PHRF1-202ENST00000413872 NEUROD1Q13562 356 aa24.4■■□□□ 1.5
PHRF1-202ENST00000413872 P3H3Q8IVL6 736 aa24.39■■□□□ 1.49
PHRF1-202ENST00000413872 DIEXFQ68CQ4 756 aaKnown RBP24.31■■□□□ 1.48
PHRF1-202ENST00000413872 ZNF326Q5BKZ1 582 aaKnown RBP24.28■■□□□ 1.48
PHRF1-202ENST00000413872 NPM1P06748 294 aaKnown RBP eCLIP24.24■■□□□ 1.47
PHRF1-202ENST00000413872 ARID3CA6NKF2 412 aa24.24■■□□□ 1.47
PHRF1-202ENST00000413872 ZNF777Q9ULD5 760 aaPredicted RBP24.21■■□□□ 1.47
PHRF1-202ENST00000413872 NACADO15069 1562 aa24.17■■□□□ 1.46
PHRF1-202ENST00000413872 ANP32CO43423 234 aa24.16■■□□□ 1.46
PHRF1-202ENST00000413872 ESF1Q9H501 851 aaKnown RBP24.15■■□□□ 1.46
PHRF1-202ENST00000413872 BCANQ96GW7 911 aa24.11■■□□□ 1.45
PHRF1-202ENST00000413872 CLSPNQ9HAW4 1339 aa24.08■■□□□ 1.45
PHRF1-202ENST00000413872 MYT1Q01538 1121 aa24.02■■□□□ 1.44
PHRF1-202ENST00000413872 NEFMP07197 916 aa24.02■■□□□ 1.44
PHRF1-202ENST00000413872 CHMP7Q8WUX9 453 aaPredicted RBP23.99■■□□□ 1.43
PHRF1-202ENST00000413872 ZNF316A6NFI3 1004 aaPredicted RBP23.95■■□□□ 1.42
PHRF1-202ENST00000413872 ZBTB47Q9UFB7 747 aaPredicted RBP23.91■■□□□ 1.42
PHRF1-202ENST00000413872 STAG3Q9UJ98 1225 aa23.89■■□□□ 1.42
PHRF1-202ENST00000413872 BAZ1BQ9UIG0 1483 aaKnown RBP23.86■■□□□ 1.41
PHRF1-202ENST00000413872 EEA1Q15075 1411 aa23.86■■□□□ 1.41
PHRF1-202ENST00000413872 TONSLQ96HA7 1378 aa23.85■■□□□ 1.41
PHRF1-202ENST00000413872 TSPY4P0CV99 314 aa23.84■■□□□ 1.41
PHRF1-202ENST00000413872 TSPY10P0CW01 314 aa23.84■■□□□ 1.41
PHRF1-202ENST00000413872 RSF1Q96T23 1441 aaPredicted RBP23.84■■□□□ 1.41
PHRF1-202ENST00000413872 MTUS2Q5JR59 1369 aa23.82■■□□□ 1.4
PHRF1-202ENST00000413872 CHGAP10645 457 aaKnown RBP23.8■■□□□ 1.4
PHRF1-202ENST00000413872 DCAF1Q9Y4B6 1507 aa23.76■■□□□ 1.39
PHRF1-202ENST00000413872 CANXP27824 592 aaKnown RBP23.75■■□□□ 1.39
PHRF1-202ENST00000413872 SLC24A1O60721 1099 aa23.73■■□□□ 1.39
PHRF1-202ENST00000413872 CLIP1P30622 1438 aa23.73■■□□□ 1.39
PHRF1-202ENST00000413872 WRNQ14191 1432 aaPredicted RBP eCLIP23.7■■□□□ 1.38
PHRF1-202ENST00000413872 RTL5Q5HYW3 569 aaPredicted RBP23.68■■□□□ 1.38
PHRF1-202ENST00000413872 ACIN1Q9UKV3 1341 aaKnown RBP23.68■■□□□ 1.38
PHRF1-202ENST00000413872 BAZ1AQ9NRL2 1556 aaPredicted RBP23.67■■□□□ 1.38
PHRF1-202ENST00000413872 CHIC2Q9UKJ5 165 aa23.65■■□□□ 1.38
PHRF1-202ENST00000413872 GOLGA3Q08378 1498 aa23.64■■□□□ 1.38
PHRF1-202ENST00000413872 KIF27Q86VH2 1401 aa23.64■■□□□ 1.38
PHRF1-202ENST00000413872 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.64■■□□□ 1.376e-8■■■□□ 15.2
PHRF1-202ENST00000413872 PLEKHD1A6NEE1 506 aa23.63■■□□□ 1.37
PHRF1-202ENST00000413872 ERCC6Q03468 1493 aa23.56■■□□□ 1.36
PHRF1-202ENST00000413872 PLPPR3Q6T4P5 718 aa23.53■■□□□ 1.36
PHRF1-202ENST00000413872 CEP164Q9UPV0 1460 aa23.47■■□□□ 1.35
PHRF1-202ENST00000413872 KCNH8Q96L42 1107 aa23.46■■□□□ 1.35
PHRF1-202ENST00000413872 GTF3C3Q9Y5Q9 886 aa23.46■■□□□ 1.35
PHRF1-202ENST00000413872 CEP162Q5TB80 1403 aa23.43■■□□□ 1.34
PHRF1-202ENST00000413872 TNIKQ9UKE5 1360 aa23.38■■□□□ 1.33
PHRF1-202ENST00000413872 CFDP1Q9UEE9 299 aaPredicted RBP23.36■■□□□ 1.33
PHRF1-202ENST00000413872 KDM2AQ9Y2K7 1162 aa23.36■■□□□ 1.33
PHRF1-202ENST00000413872 DDX10Q13206 875 aaKnown RBP23.34■■□□□ 1.33
PHRF1-202ENST00000413872 RRP7BPQ9NSQ0 103 aa23.34■■□□□ 1.33
PHRF1-202ENST00000413872 TMC1Q8TDI8 760 aa23.32■■□□□ 1.32
PHRF1-202ENST00000413872 PPP1R15AO75807 674 aaPredicted RBP23.31■■□□□ 1.32
PHRF1-202ENST00000413872 CECR2Q9BXF3 1484 aa23.31■■□□□ 1.32
PHRF1-202ENST00000413872 BCL11AQ9H165 835 aa23.3■■□□□ 1.32
PHRF1-202ENST00000413872 WDR43Q15061 677 aaKnown RBP eCLIP23.27■■□□□ 1.32
PHRF1-202ENST00000413872 HNRNPUQ00839 825 aaKnown RBP eCLIP23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms