RNA–Protein interactions for RNA: ENST00000622702.1

PDLIM2-221, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5 BASIC

Gene PDLIM2, Length 1,490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-221ENST00000622702 NISCHQ9Y2I1 1504 aa47.08■■■■■ 5.13
PDLIM2-221ENST00000622702 CCDC180Q9P1Z9 1646 aa41.78■■■■■ 4.28
PDLIM2-221ENST00000622702 ABCC9O60706 1549 aa40.79■■■■■ 4.12
PDLIM2-221ENST00000622702 DCAF8L2P0C7V8 631 aa39.36■■■■□ 3.89
PDLIM2-221ENST00000622702 RB1CC1Q8TDY2 1594 aa39.27■■■■□ 3.88
PDLIM2-221ENST00000622702 NACADO15069 1562 aa39.25■■■■□ 3.87
PDLIM2-221ENST00000622702 ZCCHC6Q5VYS8 1495 aaKnown RBP39.23■■■■□ 3.87
PDLIM2-221ENST00000622702 MYO15BQ96JP2 1530 aa39.02■■■■□ 3.84
PDLIM2-221ENST00000622702 DCAF1Q9Y4B6 1507 aa38.92■■■■□ 3.82
PDLIM2-221ENST00000622702 UNC13AQ9UPW8 1703 aa38.42■■■■□ 3.74
PDLIM2-221ENST00000622702 SCRIBQ14160 1630 aa38.17■■■■□ 3.7
PDLIM2-221ENST00000622702 PABPN1Q86U42 306 aaKnown RBP eCLIP38.16■■■■□ 3.7
PDLIM2-221ENST00000622702 BICRAQ9NZM4 1560 aa38.09■■■■□ 3.69
PDLIM2-221ENST00000622702 SHROOM4Q9ULL8 1493 aa37.64■■■■□ 3.62
PDLIM2-221ENST00000622702 DNAJC5BQ9UF47 199 aa37.32■■■■□ 3.56
PDLIM2-221ENST00000622702 EIF4G1Q04637 1599 aaKnown RBP37.07■■■■□ 3.53
PDLIM2-221ENST00000622702 CC2D2AQ9P2K1 1620 aa36.9■■■■□ 3.5
PDLIM2-221ENST00000622702 CECR2Q9BXF3 1484 aa36.67■■■■□ 3.46
PDLIM2-221ENST00000622702 SMARCA4P51532 1647 aa36.5■■■■□ 3.43
PDLIM2-221ENST00000622702 BAZ1AQ9NRL2 1556 aaPredicted RBP36.47■■■■□ 3.43
PDLIM2-221ENST00000622702 MROH2BQ7Z745 1585 aa36.3■■■■□ 3.4
PDLIM2-221ENST00000622702 ATAD2BQ9ULI0 1458 aa36.26■■■■□ 3.4
PDLIM2-221ENST00000622702 SMARCA2P51531 1590 aa36.22■■■■□ 3.39
PDLIM2-221ENST00000622702 NCAPD3P42695 1498 aa36.21■■■■□ 3.39
PDLIM2-221ENST00000622702 PEG3Q9GZU2 1588 aa36.11■■■■□ 3.37
PDLIM2-221ENST00000622702 HMGXB3Q12766 1538 aa36.04■■■■□ 3.36
PDLIM2-221ENST00000622702 RSF1Q96T23 1441 aaPredicted RBP35.99■■■■□ 3.35
PDLIM2-221ENST00000622702 BAZ1BQ9UIG0 1483 aaKnown RBP35.98■■■■□ 3.35
PDLIM2-221ENST00000622702 WIZO95785 1651 aa35.93■■■■□ 3.34
PDLIM2-221ENST00000622702 SUPT5HO00267 1087 aaKnown RBP35.57■■■■□ 3.28
PDLIM2-221ENST00000622702 TOP2AP11388 1531 aaKnown RBP35.52■■■■□ 3.28
PDLIM2-221ENST00000622702 NESP48681 1621 aa35.34■■■■□ 3.25
PDLIM2-221ENST00000622702 LAMC3Q9Y6N6 1575 aa35.25■■■■□ 3.23
PDLIM2-221ENST00000622702 CADPSQ9ULU8 1353 aa35.17■■■■□ 3.22
PDLIM2-221ENST00000622702 ERCC6Q03468 1493 aa35.14■■■■□ 3.22
PDLIM2-221ENST00000622702 CCDC88BA6NC98 1476 aa35.13■■■■□ 3.21
PDLIM2-221ENST00000622702 PDS5BQ9NTI5 1447 aa35■■■■□ 3.19
PDLIM2-221ENST00000622702 CFTRP13569 1480 aa34.99■■■■□ 3.19
PDLIM2-221ENST00000622702 KIF21AQ7Z4S6 1674 aa34.94■■■■□ 3.18
PDLIM2-221ENST00000622702 FANCD2Q9BXW9 1451 aa34.78■■■■□ 3.16
PDLIM2-221ENST00000622702 PRDM2Q13029 1718 aa34.76■■■■□ 3.15
PDLIM2-221ENST00000622702 THOC2Q8NI27 1593 aaKnown RBP34.75■■■■□ 3.15
PDLIM2-221ENST00000622702 CEP164Q9UPV0 1460 aa34.72■■■■□ 3.15
PDLIM2-221ENST00000622702 CUX2O14529 1486 aa34.69■■■■□ 3.14
PDLIM2-221ENST00000622702 MRC2Q9UBG0 1479 aa34.64■■■■□ 3.14
PDLIM2-221ENST00000622702 WDR62O43379 1518 aa34.52■■■■□ 3.12
PDLIM2-221ENST00000622702 URB2Q14146 1524 aaKnown RBP34.43■■■■□ 3.1
PDLIM2-221ENST00000622702 TOPBP1Q92547 1522 aa34.24■■■■□ 3.07
PDLIM2-221ENST00000622702 ABCC8Q09428 1581 aa34.23■■■■□ 3.07
PDLIM2-221ENST00000622702 DNMBPQ6XZF7 1577 aa34.2■■■■□ 3.07
PDLIM2-221ENST00000622702 CUX1P39880 1505 aa34.04■■■■□ 3.04
PDLIM2-221ENST00000622702 IFT140Q96RY7 1462 aa33.98■■■■□ 3.03
PDLIM2-221ENST00000622702 POLA1P09884 1462 aaPredicted RBP33.96■■■■□ 3.03
PDLIM2-221ENST00000622702 WRNQ14191 1432 aaPredicted RBP eCLIP33.91■■■■□ 3.02
PDLIM2-221ENST00000622702 FGD5Q6ZNL6 1462 aa33.9■■■■□ 3.02
PDLIM2-221ENST00000622702 TARBP1Q13395 1621 aaKnown RBP33.86■■■■□ 3.01
PDLIM2-221ENST00000622702 ZNF608Q9ULD9 1512 aaPredicted RBP33.84■■■■□ 3.01
PDLIM2-221ENST00000622702 SOGA1O94964 1423 aa33.83■■■■□ 3.01
PDLIM2-221ENST00000622702 RAD54L2Q9Y4B4 1467 aa33.83■■■■□ 3.01
PDLIM2-221ENST00000622702 SYNJ1O43426 1573 aa33.79■■■■□ 3
PDLIM2-221ENST00000622702 TOP2BQ02880 1626 aa33.78■■■■□ 3
PDLIM2-221ENST00000622702 BIVM-ERCC5R4GMW8 1640 aa33.78■■■■□ 3
PDLIM2-221ENST00000622702 EIF4G3O43432 1585 aaKnown RBP33.71■■■□□ 2.99
PDLIM2-221ENST00000622702 AQRO60306 1485 aaKnown RBP eCLIP33.67■■■□□ 2.98
PDLIM2-221ENST00000622702 CHIC1Q5VXU3 224 aa33.66■■■□□ 2.98
PDLIM2-221ENST00000622702 TDRD9Q8NDG6 1382 aaKnown RBP33.64■■■□□ 2.98
PDLIM2-221ENST00000622702 WDR97A6NE52 1622 aa33.61■■■□□ 2.97
PDLIM2-221ENST00000622702 TRIM41Q8WV44 630 aa33.58■■■□□ 2.97
PDLIM2-221ENST00000622702 ABCA10Q8WWZ4 1543 aa33.56■■■□□ 2.96
PDLIM2-221ENST00000622702 DNAJC5Q9H3Z4 198 aa33.49■■■□□ 2.95
PDLIM2-221ENST00000622702 GAPVD1Q14C86 1478 aa33.44■■■□□ 2.94
PDLIM2-221ENST00000622702 ABCA5Q8WWZ7 1642 aa33.43■■■□□ 2.94
PDLIM2-221ENST00000622702 GRIN2BQ13224 1484 aa33.41■■■□□ 2.94
PDLIM2-221ENST00000622702 PBRM1Q86U86 1689 aa33.38■■■□□ 2.93
PDLIM2-221ENST00000622702 SNAPC4Q5SXM2 1469 aa33.36■■■□□ 2.93
PDLIM2-221ENST00000622702 OSCARQ8IYS5 282 aa33.31■■■□□ 2.92
PDLIM2-221ENST00000622702 MAGI1Q96QZ7 1491 aaPredicted RBP33.29■■■□□ 2.92
PDLIM2-221ENST00000622702 FBLN2P98095 1184 aa33.28■■■□□ 2.92
PDLIM2-221ENST00000622702 CHD1O14646 1710 aa33.27■■■□□ 2.92
PDLIM2-221ENST00000622702 CHMP7Q8WUX9 453 aaPredicted RBP33.18■■■□□ 2.9
PDLIM2-221ENST00000622702 SYNJ2O15056 1496 aa33.18■■■□□ 2.9
PDLIM2-221ENST00000622702 ERICH3Q5RHP9 1530 aa33.16■■■□□ 2.9
PDLIM2-221ENST00000622702 KIF27Q86VH2 1401 aa33.15■■■□□ 2.9
PDLIM2-221ENST00000622702 ADAMTS12P58397 1594 aa33.1■■■□□ 2.89
PDLIM2-221ENST00000622702 FHAD1B1AJZ9 1412 aa33.05■■■□□ 2.88
PDLIM2-221ENST00000622702 RUSC2Q8N2Y8 1516 aa33.04■■■□□ 2.88
PDLIM2-221ENST00000622702 EEA1Q15075 1411 aa33.01■■■□□ 2.87
PDLIM2-221ENST00000622702 IGF1RP08069 1367 aa33■■■□□ 2.87
PDLIM2-221ENST00000622702 GRIN2AQ12879 1464 aa32.98■■■□□ 2.87
PDLIM2-221ENST00000622702 CUL7Q14999 1698 aa32.91■■■□□ 2.86
PDLIM2-221ENST00000622702 CLASP1Q7Z460 1538 aa32.88■■■□□ 2.85
PDLIM2-221ENST00000622702 CSRNP3Q8WYN3 585 aa32.84■■■□□ 2.85
PDLIM2-221ENST00000622702 FAM9AQ8IZU1 332 aaPredicted RBP32.83■■■□□ 2.85
PDLIM2-221ENST00000622702 CEP170Q5SW79 1584 aa32.82■■■□□ 2.84
PDLIM2-221ENST00000622702 NUP160Q12769 1436 aa32.81■■■□□ 2.84
PDLIM2-221ENST00000622702 CARMIL1Q5VZK9 1371 aa32.81■■■□□ 2.84
PDLIM2-221ENST00000622702 ARHGEF11O15085 1522 aa32.76■■■□□ 2.83
PDLIM2-221ENST00000622702 RIMBP3CA6NJZ7 1639 aa32.76■■■□□ 2.83
PDLIM2-221ENST00000622702 RIMBP3BA6NNM3 1639 aa32.76■■■□□ 2.83
PDLIM2-221ENST00000622702 RIMBP3Q9UFD9 1639 aa32.76■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms