RNA–Protein interactions for RNA: ENST00000447873.5

SGCE-207, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-207ENST00000447873 NISCHQ9Y2I1 1504 aa45.58■■■■■ 4.89
SGCE-207ENST00000447873 CCDC180Q9P1Z9 1646 aa40.1■■■■■ 4.01
SGCE-207ENST00000447873 ABCC9O60706 1549 aa38.42■■■■□ 3.74
SGCE-207ENST00000447873 ZCCHC6Q5VYS8 1495 aaKnown RBP38.15■■■■□ 3.7
SGCE-207ENST00000447873 DCAF8L2P0C7V8 631 aa37.84■■■■□ 3.65
SGCE-207ENST00000447873 DCAF1Q9Y4B6 1507 aa37.71■■■■□ 3.63
SGCE-207ENST00000447873 MYO15BQ96JP2 1530 aa37.52■■■■□ 3.6
SGCE-207ENST00000447873 NACADO15069 1562 aa37.48■■■■□ 3.59
SGCE-207ENST00000447873 RB1CC1Q8TDY2 1594 aa37.33■■■■□ 3.57
SGCE-207ENST00000447873 SCRIBQ14160 1630 aa36.73■■■■□ 3.47
SGCE-207ENST00000447873 SHROOM4Q9ULL8 1493 aa36.67■■■■□ 3.46
SGCE-207ENST00000447873 UNC13AQ9UPW8 1703 aa36.53■■■■□ 3.44
SGCE-207ENST00000447873 BICRAQ9NZM4 1560 aa36.15■■■■□ 3.38
SGCE-207ENST00000447873 PABPN1Q86U42 306 aaKnown RBP eCLIP36.08■■■■□ 3.37
SGCE-207ENST00000447873 CECR2Q9BXF3 1484 aa35.42■■■■□ 3.26
SGCE-207ENST00000447873 BAZ1AQ9NRL2 1556 aaPredicted RBP35.28■■■■□ 3.24
SGCE-207ENST00000447873 SMARCA4P51532 1647 aa35.19■■■■□ 3.22
SGCE-207ENST00000447873 MROH2BQ7Z745 1585 aa35.16■■■■□ 3.22
SGCE-207ENST00000447873 EIF4G1Q04637 1599 aaKnown RBP35.14■■■■□ 3.22
SGCE-207ENST00000447873 RSF1Q96T23 1441 aaPredicted RBP35.09■■■■□ 3.21
SGCE-207ENST00000447873 SUPT5HO00267 1087 aaKnown RBP34.99■■■■□ 3.19
SGCE-207ENST00000447873 WIZO95785 1651 aa34.86■■■■□ 3.17
SGCE-207ENST00000447873 PEG3Q9GZU2 1588 aa34.78■■■■□ 3.16
SGCE-207ENST00000447873 CC2D2AQ9P2K1 1620 aa34.78■■■■□ 3.16
SGCE-207ENST00000447873 SMARCA2P51531 1590 aa34.75■■■■□ 3.15
SGCE-207ENST00000447873 ATAD2BQ9ULI0 1458 aa34.74■■■■□ 3.15
SGCE-207ENST00000447873 NCAPD3P42695 1498 aa34.57■■■■□ 3.12
SGCE-207ENST00000447873 BAZ1BQ9UIG0 1483 aaKnown RBP34.54■■■■□ 3.12
SGCE-207ENST00000447873 TOP2AP11388 1531 aaKnown RBP34.5■■■■□ 3.11
SGCE-207ENST00000447873 HMGXB3Q12766 1538 aa34.49■■■■□ 3.11
SGCE-207ENST00000447873 DNAJC5BQ9UF47 199 aa34.4■■■■□ 3.1
SGCE-207ENST00000447873 CCDC88BA6NC98 1476 aa34.11■■■■□ 3.05
SGCE-207ENST00000447873 CADPSQ9ULU8 1353 aa33.64■■■□□ 2.98
SGCE-207ENST00000447873 CFTRP13569 1480 aa33.62■■■□□ 2.97
SGCE-207ENST00000447873 LAMC3Q9Y6N6 1575 aa33.53■■■□□ 2.96
SGCE-207ENST00000447873 NESP48681 1621 aa33.51■■■□□ 2.96
SGCE-207ENST00000447873 PRDM2Q13029 1718 aa33.48■■■□□ 2.95
SGCE-207ENST00000447873 PDS5BQ9NTI5 1447 aa33.29■■■□□ 2.92
SGCE-207ENST00000447873 FANCD2Q9BXW9 1451 aa33.26■■■□□ 2.91
SGCE-207ENST00000447873 ABCC8Q09428 1581 aa33.19■■■□□ 2.9
SGCE-207ENST00000447873 KIF21AQ7Z4S6 1674 aa33.16■■■□□ 2.9
SGCE-207ENST00000447873 CHIC1Q5VXU3 224 aa33.15■■■□□ 2.9
SGCE-207ENST00000447873 CEP164Q9UPV0 1460 aa33.13■■■□□ 2.89
SGCE-207ENST00000447873 WRNQ14191 1432 aaPredicted RBP eCLIP33.07■■■□□ 2.88
SGCE-207ENST00000447873 ERCC6Q03468 1493 aa33.05■■■□□ 2.88
SGCE-207ENST00000447873 TRIM41Q8WV44 630 aa32.99■■■□□ 2.87
SGCE-207ENST00000447873 SYNJ1O43426 1573 aa32.95■■■□□ 2.87
SGCE-207ENST00000447873 CUX1P39880 1505 aa32.93■■■□□ 2.86
SGCE-207ENST00000447873 TOP2BQ02880 1626 aa32.9■■■□□ 2.86
SGCE-207ENST00000447873 MRC2Q9UBG0 1479 aa32.88■■■□□ 2.85
SGCE-207ENST00000447873 BIVM-ERCC5R4GMW8 1640 aa32.88■■■□□ 2.85
SGCE-207ENST00000447873 DNMBPQ6XZF7 1577 aa32.87■■■□□ 2.85
SGCE-207ENST00000447873 URB2Q14146 1524 aaKnown RBP32.86■■■□□ 2.85
SGCE-207ENST00000447873 TOPBP1Q92547 1522 aa32.83■■■□□ 2.85
SGCE-207ENST00000447873 THOC2Q8NI27 1593 aaKnown RBP32.77■■■□□ 2.84
SGCE-207ENST00000447873 WDR62O43379 1518 aa32.74■■■□□ 2.83
SGCE-207ENST00000447873 FGD5Q6ZNL6 1462 aa32.68■■■□□ 2.82
SGCE-207ENST00000447873 POLA1P09884 1462 aaPredicted RBP32.62■■■□□ 2.81
SGCE-207ENST00000447873 SOGA1O94964 1423 aa32.51■■■□□ 2.79
SGCE-207ENST00000447873 RAD54L2Q9Y4B4 1467 aa32.48■■■□□ 2.79
SGCE-207ENST00000447873 CUX2O14529 1486 aa32.45■■■□□ 2.79
SGCE-207ENST00000447873 TARBP1Q13395 1621 aaKnown RBP32.39■■■□□ 2.78
SGCE-207ENST00000447873 ABCA10Q8WWZ4 1543 aa32.39■■■□□ 2.77
SGCE-207ENST00000447873 IFT140Q96RY7 1462 aa32.38■■■□□ 2.77
SGCE-207ENST00000447873 WDR97A6NE52 1622 aa32.36■■■□□ 2.77
SGCE-207ENST00000447873 FAM9AQ8IZU1 332 aaPredicted RBP32.32■■■□□ 2.77
SGCE-207ENST00000447873 RUSC2Q8N2Y8 1516 aa32.32■■■□□ 2.76
SGCE-207ENST00000447873 KIF27Q86VH2 1401 aa32.31■■■□□ 2.76
SGCE-207ENST00000447873 EEA1Q15075 1411 aa32.29■■■□□ 2.76
SGCE-207ENST00000447873 TDRD9Q8NDG6 1382 aaKnown RBP32.23■■■□□ 2.75
SGCE-207ENST00000447873 ZNF608Q9ULD9 1512 aaPredicted RBP32.18■■■□□ 2.74
SGCE-207ENST00000447873 ABCA5Q8WWZ7 1642 aa32.18■■■□□ 2.74
SGCE-207ENST00000447873 GAPVD1Q14C86 1478 aa32.15■■■□□ 2.74
SGCE-207ENST00000447873 CSRNP3Q8WYN3 585 aa32.15■■■□□ 2.74
SGCE-207ENST00000447873 AQRO60306 1485 aaKnown RBP eCLIP32.13■■■□□ 2.73
SGCE-207ENST00000447873 EIF4G3O43432 1585 aaKnown RBP32.1■■■□□ 2.73
SGCE-207ENST00000447873 IGF1RP08069 1367 aa32.05■■■□□ 2.72
SGCE-207ENST00000447873 PBRM1Q86U86 1689 aa32.04■■■□□ 2.72
SGCE-207ENST00000447873 ERICH3Q5RHP9 1530 aa32.02■■■□□ 2.72
SGCE-207ENST00000447873 GRIN2BQ13224 1484 aa32■■■□□ 2.71
SGCE-207ENST00000447873 CUL7Q14999 1698 aa31.93■■■□□ 2.7
SGCE-207ENST00000447873 KIF21BO75037 1637 aa31.9■■■□□ 2.7
SGCE-207ENST00000447873 CARMIL1Q5VZK9 1371 aa31.9■■■□□ 2.7
SGCE-207ENST00000447873 PRXQ9BXM0 1461 aa31.9■■■□□ 2.7
SGCE-207ENST00000447873 EHMT2Q96KQ7 1210 aa31.86■■■□□ 2.69
SGCE-207ENST00000447873 SNAPC4Q5SXM2 1469 aa31.85■■■□□ 2.69
SGCE-207ENST00000447873 LOC105371045A0A1W2PR82 267 aa31.84■■■□□ 2.69
SGCE-207ENST00000447873 MAGI1Q96QZ7 1491 aaPredicted RBP31.82■■■□□ 2.68
SGCE-207ENST00000447873 ADAMTS12P58397 1594 aa31.81■■■□□ 2.68
SGCE-207ENST00000447873 RAPGEF2Q9Y4G8 1499 aa31.8■■■□□ 2.68
SGCE-207ENST00000447873 GOLGA3Q08378 1498 aa31.8■■■□□ 2.68
SGCE-207ENST00000447873 FHAD1B1AJZ9 1412 aa31.79■■■□□ 2.68
SGCE-207ENST00000447873 UBTFP17480 764 aaKnown RBP31.69■■■□□ 2.66
SGCE-207ENST00000447873 SYNJ2O15056 1496 aa31.69■■■□□ 2.66
SGCE-207ENST00000447873 CHMP7Q8WUX9 453 aaPredicted RBP31.65■■■□□ 2.66
SGCE-207ENST00000447873 FBLN2P98095 1184 aa31.63■■■□□ 2.65
SGCE-207ENST00000447873 GRIN2AQ12879 1464 aa31.6■■■□□ 2.65
SGCE-207ENST00000447873 TNIKQ9UKE5 1360 aa31.56■■■□□ 2.64
SGCE-207ENST00000447873 CHD1O14646 1710 aa31.55■■■□□ 2.64
SGCE-207ENST00000447873 CTTNBP2Q8WZ74 1663 aa31.48■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms