Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.068e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.038e-10■□□□□ 9.1
SMNDC1O75940 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.48■■□□□ 1.033e-6■□□□□ 9.1
SMNDC1O75940 LONP1-205ENST00000587365 641 ntTSL 521.47■■□□□ 1.033e-6■□□□□ 9.1
SMNDC1O75940 LUC7L-219ENST00000494545 725 ntTSL 520.25■□□□□ 0.833e-6■□□□□ 9.1
SMNDC1O75940 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.793e-6■□□□□ 9.1
SMNDC1O75940 MBD6-202ENST00000546632 607 ntTSL 219.79■□□□□ 0.763e-6■□□□□ 9.1
SMNDC1O75940 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.743e-6■□□□□ 9.1
SMNDC1O75940 RAF1-203ENST00000423275 2354 ntTSL 219.17■□□□□ 0.668e-10■□□□□ 9.1
SMNDC1O75940 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.14■□□□□ 0.663e-6■□□□□ 9.1
SMNDC1O75940 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.653e-6■□□□□ 9.1
SMNDC1O75940 MBD6-210ENST00000549623 544 ntTSL 418.98■□□□□ 0.633e-6■□□□□ 9.1
SMNDC1O75940 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.478e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.428e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.418e-10■□□□□ 9.1
SMNDC1O75940 INO80E-211ENST00000567987 1926 ntTSL 1 (best)17.51■□□□□ 0.393e-6■□□□□ 9.1
SMNDC1O75940 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.383e-6■□□□□ 9.1
SMNDC1O75940 AP005263.1-202ENST00000578850 198 ntTSL 217.34■□□□□ 0.373e-6■□□□□ 9.1
SMNDC1O75940 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.34■□□□□ 0.373e-6■□□□□ 9.1
SMNDC1O75940 LONP1-214ENST00000591321 913 ntTSL 316.62■□□□□ 0.253e-6■□□□□ 9.1
SMNDC1O75940 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.46■□□□□ 0.238e-10■□□□□ 9.1
SMNDC1O75940 COPS6-210ENST00000496358 610 ntTSL 216.44■□□□□ 0.223e-6■□□□□ 9.1
SMNDC1O75940 LONP1-206ENST00000587552 2816 ntTSL 216.4■□□□□ 0.223e-6■□□□□ 9.1
SMNDC1O75940 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.2■□□□□ 0.183e-6■□□□□ 9.1
SMNDC1O75940 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.173e-6■□□□□ 9.1
SMNDC1O75940 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC16.03■□□□□ 0.163e-6■□□□□ 9.1
SMNDC1O75940 INO80E-205ENST00000562441 1412 ntTSL 216.01■□□□□ 0.153e-6■□□□□ 9.1
SMNDC1O75940 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.8■□□□□ 0.123e-6■□□□□ 9.1
SMNDC1O75940 LONP1-211ENST00000590558 2884 ntTSL 515.77■□□□□ 0.123e-6■□□□□ 9.1
SMNDC1O75940 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.118e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-207ENST00000361140 2701 ntTSL 1 (best)15.74■□□□□ 0.118e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.59■□□□□ 0.098e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.088e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-218ENST00000454523 810 ntAPPRIS ALT2 TSL 215.09■□□□□ 0.018e-10■□□□□ 9.1
SMNDC1O75940 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.94□□□□□ -0.023e-6■□□□□ 9.1
SMNDC1O75940 MBD6-213ENST00000552255 509 ntTSL 414.8□□□□□ -0.043e-6■□□□□ 9.1
SMNDC1O75940 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.8□□□□□ -0.043e-6■□□□□ 9.1
SMNDC1O75940 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.78□□□□□ -0.048e-10■□□□□ 9.1
SMNDC1O75940 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.053e-6■□□□□ 9.1
SMNDC1O75940 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.69□□□□□ -0.063e-6■□□□□ 9.1
SMNDC1O75940 PTGES3-206ENST00000537473 2939 ntTSL 214.66□□□□□ -0.063e-6■□□□□ 9.1
SMNDC1O75940 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.57□□□□□ -0.083e-6■□□□□ 9.1
SMNDC1O75940 INO80E-203ENST00000540562 3064 ntTSL 214.57□□□□□ -0.083e-6■□□□□ 9.1
SMNDC1O75940 HM13-219ENST00000487964 902 ntTSL 514.55□□□□□ -0.088e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-217ENST00000443231 932 ntAPPRIS ALT2 TSL 314.33□□□□□ -0.128e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.128e-10■□□□□ 9.1
SMNDC1O75940 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.26□□□□□ -0.133e-6■□□□□ 9.1
SMNDC1O75940 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.138e-10■□□□□ 9.1
SMNDC1O75940 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.23e-6■□□□□ 9.1
SMNDC1O75940 HM13-220ENST00000492709 1248 ntTSL 513.67□□□□□ -0.228e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-221ENST00000476093 1037 ntTSL 313.62□□□□□ -0.238e-10■□□□□ 9.1
SMNDC1O75940 MBD6-209ENST00000549231 538 ntTSL 413.57□□□□□ -0.243e-6■□□□□ 9.1
SMNDC1O75940 HM13-213ENST00000469126 756 ntTSL 513.5□□□□□ -0.258e-10■□□□□ 9.1
SMNDC1O75940 INO80E-208ENST00000567065 883 ntTSL 313.33□□□□□ -0.283e-6■□□□□ 9.1
SMNDC1O75940 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.283e-6■□□□□ 9.1
SMNDC1O75940 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.38e-10■□□□□ 9.1
SMNDC1O75940 MBD6-207ENST00000548887 568 ntTSL 412.72□□□□□ -0.373e-6■□□□□ 9.1
SMNDC1O75940 INO80E-213ENST00000569957 4469 ntTSL 212.72□□□□□ -0.373e-6■□□□□ 9.1
SMNDC1O75940 HM13-222ENST00000494153 757 ntTSL 512.67□□□□□ -0.388e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-202ENST00000311573 2682 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.418e-10■□□□□ 9.1
SMNDC1O75940 HM13-206ENST00000460389 1075 ntTSL 512.5□□□□□ -0.418e-10■□□□□ 9.1
SMNDC1O75940 PFKP-205ENST00000413079 496 ntTSL 312.41□□□□□ -0.423e-6■□□□□ 9.1
SMNDC1O75940 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC12.4□□□□□ -0.423e-6■□□□□ 9.1
SMNDC1O75940 YY1AP1-220ENST00000476027 927 ntTSL 312.37□□□□□ -0.438e-10■□□□□ 9.1
SMNDC1O75940 HM13-203ENST00000344042 847 ntTSL 512.32□□□□□ -0.448e-10■□□□□ 9.1
SMNDC1O75940 HM13-204ENST00000398174 3792 ntTSL 1 (best) BASIC12.29□□□□□ -0.448e-10■□□□□ 9.1
SMNDC1O75940 MBD6-211ENST00000551351 532 ntTSL 411.77□□□□□ -0.533e-6■□□□□ 9.1
SMNDC1O75940 HM13-211ENST00000468559 675 ntTSL 511.51□□□□□ -0.578e-10■□□□□ 9.1
SMNDC1O75940 HM13-217ENST00000483310 755 ntTSL 310.98□□□□□ -0.658e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-209ENST00000368330 2555 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.688e-10■□□□□ 9.1
SMNDC1O75940 MBD6-203ENST00000546805 596 ntTSL 510.73□□□□□ -0.693e-6■□□□□ 9.1
SMNDC1O75940 HM13-212ENST00000469097 801 ntTSL 510.44□□□□□ -0.748e-10■□□□□ 9.1
SMNDC1O75940 MED6-202ENST00000430055 1507 ntTSL 2 BASIC10.39□□□□□ -0.753e-6■□□□□ 9.1
SMNDC1O75940 PAN2-221ENST00000610546 5301 ntAPPRIS ALT1 TSL 5 BASIC10.12□□□□□ -0.793e-6■□□□□ 9.1
SMNDC1O75940 PAN2-205ENST00000547226 2642 ntTSL 510□□□□□ -0.813e-6■□□□□ 9.1
SMNDC1O75940 UBE4B-210ENST00000488228 560 ntTSL 39.84□□□□□ -0.833e-6■□□□□ 9.1
SMNDC1O75940 PAN2-203ENST00000440411 4576 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.853e-6■□□□□ 9.1
SMNDC1O75940 YY1AP1-204ENST00000354691 2498 ntTSL 29.73□□□□□ -0.858e-10■□□□□ 9.1
SMNDC1O75940 MED6-208ENST00000555296 856 ntTSL 29.67□□□□□ -0.863e-6■□□□□ 9.1
SMNDC1O75940 PAN2-202ENST00000425394 5372 ntAPPRIS ALT1 TSL 1 (best) BASIC9.62□□□□□ -0.873e-6■□□□□ 9.1
SMNDC1O75940 PAN2-209ENST00000548043 4641 ntAPPRIS ALT1 TSL 5 BASIC9.61□□□□□ -0.873e-6■□□□□ 9.1
SMNDC1O75940 YY1AP1-215ENST00000436865 2684 ntTSL 1 (best)9.55□□□□□ -0.888e-10■□□□□ 9.1
SMNDC1O75940 RAF1-209ENST00000475353 599 ntTSL 49.51□□□□□ -0.898e-10■□□□□ 9.1
SMNDC1O75940 RAF1-207ENST00000465826 1518 ntTSL 39.46□□□□□ -0.98e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-203ENST00000347088 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.918e-10■□□□□ 9.1
SMNDC1O75940 MED6-203ENST00000440435 931 ntTSL 2 BASIC9.34□□□□□ -0.913e-6■□□□□ 9.1
SMNDC1O75940 MBD6-208ENST00000549042 533 ntTSL 49.25□□□□□ -0.933e-6■□□□□ 9.1
SMNDC1O75940 PAN2-201ENST00000257931 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC9.22□□□□□ -0.933e-6■□□□□ 9.1
SMNDC1O75940 HM13-215ENST00000474466 440 ntTSL 39.16□□□□□ -0.948e-10■□□□□ 9.1
SMNDC1O75940 HM13-214ENST00000472128 865 ntTSL 59.01□□□□□ -0.978e-10■□□□□ 9.1
SMNDC1O75940 YY1AP1-225ENST00000496324 714 ntTSL 58.84□□□□□ -0.998e-10■□□□□ 9.1
SMNDC1O75940 INO80E-204ENST00000562291 255 ntTSL 38.72□□□□□ -1.013e-6■□□□□ 9.1
SMNDC1O75940 RAF1-212ENST00000494557 3205 ntTSL 1 (best)8.7□□□□□ -1.028e-10■□□□□ 9.1
SMNDC1O75940 UCK2-208ENST00000479872 4669 ntTSL 28.47□□□□□ -1.053e-6■□□□□ 9.1
SMNDC1O75940 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC8.38□□□□□ -1.073e-6■□□□□ 9.1
SMNDC1O75940 UCK2-202ENST00000462329 830 ntTSL 1 (best)8.16□□□□□ -1.13e-6■□□□□ 9.1
SMNDC1O75940 PAN2-204ENST00000547100 483 ntTSL 38.16□□□□□ -1.13e-6■□□□□ 9.1
SMNDC1O75940 PAN2-212ENST00000549090 423 ntTSL 28.16□□□□□ -1.13e-6■□□□□ 9.1
SMNDC1O75940 PAN2-217ENST00000551359 4685 ntTSL 57.87□□□□□ -1.153e-6■□□□□ 9.1
SMNDC1O75940 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC7.71□□□□□ -1.183e-6■□□□□ 9.1
Retrieved 100 of 11,362 protein–RNA pairs in 225.4 ms