RNA–Protein interactions for RNA: ENST00000494557.1

RAF1-212, Transcript of Raf-1 proto-oncogene, serine/threonine kinase, humanhuman

TSL 1 (best)

Gene RAF1, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1-212ENST00000494557 NISCHQ9Y2I1 1504 aa19.24■□□□□ 0.67
RAF1-212ENST00000494557 CCDC180Q9P1Z9 1646 aa17■□□□□ 0.31
RAF1-212ENST00000494557 ZCCHC6Q5VYS8 1495 aaKnown RBP16.38■□□□□ 0.21
RAF1-212ENST00000494557 DCAF1Q9Y4B6 1507 aa16.3■□□□□ 0.2
RAF1-212ENST00000494557 MYO15BQ96JP2 1530 aa16■□□□□ 0.15
RAF1-212ENST00000494557 ABCC9O60706 1549 aa15.5■□□□□ 0.07
RAF1-212ENST00000494557 NACADO15069 1562 aa15.44■□□□□ 0.06
RAF1-212ENST00000494557 UNC13AQ9UPW8 1703 aa15.17■□□□□ 0.02
RAF1-212ENST00000494557 RB1CC1Q8TDY2 1594 aa15.08■□□□□ 0
RAF1-212ENST00000494557 SHROOM4Q9ULL8 1493 aa15.07■□□□□ 0
RAF1-212ENST00000494557 SCRIBQ14160 1630 aa15.07■□□□□ 0
RAF1-212ENST00000494557 EIF4G1Q04637 1599 aaKnown RBP15.02□□□□□ -0.01
RAF1-212ENST00000494557 RSF1Q96T23 1441 aaPredicted RBP14.94□□□□□ -0.02
RAF1-212ENST00000494557 BAZ1AQ9NRL2 1556 aaPredicted RBP14.94□□□□□ -0.02
RAF1-212ENST00000494557 PEG3Q9GZU2 1588 aa14.88□□□□□ -0.03
RAF1-212ENST00000494557 BICRAQ9NZM4 1560 aa14.8□□□□□ -0.04
RAF1-212ENST00000494557 SMARCA4P51532 1647 aa14.78□□□□□ -0.04
RAF1-212ENST00000494557 MROH2BQ7Z745 1585 aa14.76□□□□□ -0.05
RAF1-212ENST00000494557 WIZO95785 1651 aa14.73□□□□□ -0.05
RAF1-212ENST00000494557 TOP2AP11388 1531 aaKnown RBP14.71□□□□□ -0.05
RAF1-212ENST00000494557 CHIC1Q5VXU3 224 aa14.68□□□□□ -0.06
RAF1-212ENST00000494557 CECR2Q9BXF3 1484 aa14.66□□□□□ -0.06
RAF1-212ENST00000494557 SUPT5HO00267 1087 aaKnown RBP14.59□□□□□ -0.07
RAF1-212ENST00000494557 SMARCA2P51531 1590 aa14.58□□□□□ -0.08
RAF1-212ENST00000494557 PRDM2Q13029 1718 aa14.43□□□□□ -0.1
RAF1-212ENST00000494557 DCAF8L2P0C7V8 631 aa14.39□□□□□ -0.11
RAF1-212ENST00000494557 HMGXB3Q12766 1538 aa14.35□□□□□ -0.11
RAF1-212ENST00000494557 CCDC88BA6NC98 1476 aa14.33□□□□□ -0.12
RAF1-212ENST00000494557 BIVM-ERCC5R4GMW8 1640 aa14.28□□□□□ -0.12
RAF1-212ENST00000494557 ATAD2BQ9ULI0 1458 aa14.23□□□□□ -0.13
RAF1-212ENST00000494557 KIF21BO75037 1637 aa14.17□□□□□ -0.14
RAF1-212ENST00000494557 EEA1Q15075 1411 aa14.16□□□□□ -0.14
RAF1-212ENST00000494557 NCAPD3P42695 1498 aa14.14□□□□□ -0.15
RAF1-212ENST00000494557 TOP2BQ02880 1626 aa14.14□□□□□ -0.15
RAF1-212ENST00000494557 WRNQ14191 1432 aaPredicted RBP eCLIP14.1□□□□□ -0.15
RAF1-212ENST00000494557 SYNJ1O43426 1573 aa14.1□□□□□ -0.15
RAF1-212ENST00000494557 ABCC8Q09428 1581 aa14.09□□□□□ -0.15
RAF1-212ENST00000494557 BAZ1BQ9UIG0 1483 aaKnown RBP14.04□□□□□ -0.16
RAF1-212ENST00000494557 ERICH3Q5RHP9 1530 aa13.96□□□□□ -0.17
RAF1-212ENST00000494557 CFTRP13569 1480 aa13.93□□□□□ -0.18
RAF1-212ENST00000494557 HRCP23327 699 aa13.9□□□□□ -0.18
RAF1-212ENST00000494557 TRIM41Q8WV44 630 aa13.9□□□□□ -0.18
RAF1-212ENST00000494557 TNIKQ9UKE5 1360 aa13.89□□□□□ -0.19
RAF1-212ENST00000494557 WDR97A6NE52 1622 aa13.86□□□□□ -0.19
RAF1-212ENST00000494557 GOLGA3Q08378 1498 aa13.84□□□□□ -0.19
RAF1-212ENST00000494557 CEP164Q9UPV0 1460 aa13.83□□□□□ -0.2
RAF1-212ENST00000494557 CUX1P39880 1505 aa13.83□□□□□ -0.2
RAF1-212ENST00000494557 LOC105371045A0A1W2PR82 267 aa13.82□□□□□ -0.2
RAF1-212ENST00000494557 SOGA1O94964 1423 aa13.81□□□□□ -0.2
RAF1-212ENST00000494557 PRXQ9BXM0 1461 aa13.8□□□□□ -0.2
RAF1-212ENST00000494557 TRIM26Q12899 539 aaPredicted RBP13.78□□□□□ -0.2
RAF1-212ENST00000494557 RUSC2Q8N2Y8 1516 aa13.77□□□□□ -0.2
RAF1-212ENST00000494557 CC2D2AQ9P2K1 1620 aa13.75□□□□□ -0.21
RAF1-212ENST00000494557 CEP162Q5TB80 1403 aa13.74□□□□□ -0.21
RAF1-212ENST00000494557 LAMC3Q9Y6N6 1575 aa13.67□□□□□ -0.22
RAF1-212ENST00000494557 MAP3K1Q13233 1512 aa13.66□□□□□ -0.22
RAF1-212ENST00000494557 DNMBPQ6XZF7 1577 aa13.65□□□□□ -0.22
RAF1-212ENST00000494557 PABPN1Q86U42 306 aaKnown RBP eCLIP13.65□□□□□ -0.22
RAF1-212ENST00000494557 CUL7Q14999 1698 aa13.63□□□□□ -0.23
RAF1-212ENST00000494557 CTTNBP2Q8WZ74 1663 aa13.6□□□□□ -0.23
RAF1-212ENST00000494557 CFAP43Q8NDM7 1665 aa13.6□□□□□ -0.23
RAF1-212ENST00000494557 ABCA5Q8WWZ7 1642 aa13.6□□□□□ -0.23
RAF1-212ENST00000494557 RAPGEF2Q9Y4G8 1499 aa13.59□□□□□ -0.23
RAF1-212ENST00000494557 KIF21AQ7Z4S6 1674 aa13.59□□□□□ -0.23
RAF1-212ENST00000494557 VPS8Q8N3P4 1428 aa13.59□□□□□ -0.23
RAF1-212ENST00000494557 CSRNP3Q8WYN3 585 aa13.58□□□□□ -0.24
RAF1-212ENST00000494557 ARAP1Q96P48 1450 aa13.56□□□□□ -0.24
RAF1-212ENST00000494557 CADPSQ9ULU8 1353 aa13.56□□□□□ -0.24
RAF1-212ENST00000494557 ABCA10Q8WWZ4 1543 aa13.56□□□□□ -0.24
RAF1-212ENST00000494557 PCGF6Q9BYE7 350 aa13.55□□□□□ -0.24
RAF1-212ENST00000494557 CUX2O14529 1486 aa13.54□□□□□ -0.24
RAF1-212ENST00000494557 CLIP1P30622 1438 aa13.5□□□□□ -0.25
RAF1-212ENST00000494557 ZEB1P37275 1124 aaPredicted RBP13.5□□□□□ -0.25
RAF1-212ENST00000494557 KIF27Q86VH2 1401 aa13.49□□□□□ -0.25
RAF1-212ENST00000494557 SAMD9Q5K651 1589 aa13.48□□□□□ -0.25
RAF1-212ENST00000494557 TARBP1Q13395 1621 aaKnown RBP13.48□□□□□ -0.25
RAF1-212ENST00000494557 EFCAB5A4FU69 1503 aa13.47□□□□□ -0.25
RAF1-212ENST00000494557 FGD5Q6ZNL6 1462 aa13.45□□□□□ -0.26
RAF1-212ENST00000494557 TOPBP1Q92547 1522 aa13.45□□□□□ -0.26
RAF1-212ENST00000494557 AQRO60306 1485 aaKnown RBP eCLIP13.43□□□□□ -0.261e-11■■■■■ 39.8
RAF1-212ENST00000494557 THOC2Q8NI27 1593 aaKnown RBP13.43□□□□□ -0.26
RAF1-212ENST00000494557 FANCD2Q9BXW9 1451 aa13.42□□□□□ -0.26
RAF1-212ENST00000494557 ARHGAP35Q9NRY4 1499 aa13.42□□□□□ -0.26
RAF1-212ENST00000494557 PBRM1Q86U86 1689 aa13.42□□□□□ -0.26
RAF1-212ENST00000494557 LRRIQ1Q96JM4 1722 aa13.42□□□□□ -0.26
RAF1-212ENST00000494557 RRBP1Q9P2E9 1410 aaKnown RBP13.41□□□□□ -0.26
RAF1-212ENST00000494557 TIAM1Q13009 1591 aa13.39□□□□□ -0.27
RAF1-212ENST00000494557 POLA1P09884 1462 aaPredicted RBP13.38□□□□□ -0.27
RAF1-212ENST00000494557 IGF1RP08069 1367 aa13.37□□□□□ -0.27
RAF1-212ENST00000494557 URB2Q14146 1524 aaKnown RBP13.36□□□□□ -0.27
RAF1-212ENST00000494557 WDR62O43379 1518 aa13.3□□□□□ -0.28
RAF1-212ENST00000494557 FAM9AQ8IZU1 332 aaPredicted RBP13.29□□□□□ -0.28
RAF1-212ENST00000494557 PCF11O94913 1555 aaKnown RBP13.29□□□□□ -0.28
RAF1-212ENST00000494557 FYCO1Q9BQS8 1478 aa13.29□□□□□ -0.28
RAF1-212ENST00000494557 ARHGEF11O15085 1522 aa13.28□□□□□ -0.28
RAF1-212ENST00000494557 ADAMTS12P58397 1594 aa13.28□□□□□ -0.28
RAF1-212ENST00000494557 SNAPC4Q5SXM2 1469 aa13.27□□□□□ -0.28
RAF1-212ENST00000494557 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.26□□□□□ -0.29
RAF1-212ENST00000494557 CLSPNQ9HAW4 1339 aa13.21□□□□□ -0.29
RAF1-212ENST00000494557 NESP48681 1621 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms