RNA–Protein interactions for RNA: ENST00000540562.1

INO80E-203, Transcript of INO80 complex subunit E, humanhuman

TSL 2

Gene INO80E, Length 3,064 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
INO80E-203ENST00000540562 NISCHQ9Y2I1 1504 aa28.33■■■□□ 2.13
INO80E-203ENST00000540562 SHROOM4Q9ULL8 1493 aa25.31■■□□□ 1.64
INO80E-203ENST00000540562 SUPT5HO00267 1087 aaKnown RBP24.87■■□□□ 1.57
INO80E-203ENST00000540562 DCAF8L2P0C7V8 631 aa24.74■■□□□ 1.55
INO80E-203ENST00000540562 ZCCHC6Q5VYS8 1495 aaKnown RBP23.89■■□□□ 1.42
INO80E-203ENST00000540562 CHIC1Q5VXU3 224 aa23.74■■□□□ 1.39
INO80E-203ENST00000540562 MYO15BQ96JP2 1530 aa23.69■■□□□ 1.38
INO80E-203ENST00000540562 CCDC180Q9P1Z9 1646 aa23.56■■□□□ 1.36
INO80E-203ENST00000540562 PCGF6Q9BYE7 350 aa23.53■■□□□ 1.36
INO80E-203ENST00000540562 LOC105371045A0A1W2PR82 267 aa23.47■■□□□ 1.35
INO80E-203ENST00000540562 EHMT2Q96KQ7 1210 aa23.38■■□□□ 1.33
INO80E-203ENST00000540562 PPARGC1BQ86YN6 1023 aaKnown RBP23.25■■□□□ 1.31
INO80E-203ENST00000540562 HRCP23327 699 aa23.17■■□□□ 1.3
INO80E-203ENST00000540562 FAM9AQ8IZU1 332 aaPredicted RBP23.16■■□□□ 1.3
INO80E-203ENST00000540562 SCRIBQ14160 1630 aa22.9■■□□□ 1.26
INO80E-203ENST00000540562 TRIM41Q8WV44 630 aa22.83■■□□□ 1.25
INO80E-203ENST00000540562 ABCC9O60706 1549 aa22.77■■□□□ 1.24
INO80E-203ENST00000540562 DCAF1Q9Y4B6 1507 aa22.74■■□□□ 1.23
INO80E-203ENST00000540562 RSF1Q96T23 1441 aaPredicted RBP22.66■■□□□ 1.22
INO80E-203ENST00000540562 TRIM26Q12899 539 aaPredicted RBP22.59■■□□□ 1.21
INO80E-203ENST00000540562 TTBK1Q5TCY1 1321 aaPredicted RBP22.56■■□□□ 1.2
INO80E-203ENST00000540562 RB1CC1Q8TDY2 1594 aa22.52■■□□□ 1.19
INO80E-203ENST00000540562 CECR2Q9BXF3 1484 aa22.48■■□□□ 1.19
INO80E-203ENST00000540562 MROH2BQ7Z745 1585 aa22.26■■□□□ 1.15
INO80E-203ENST00000540562 WIZO95785 1651 aa22.15■■□□□ 1.14
INO80E-203ENST00000540562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.14■■□□□ 1.14
INO80E-203ENST00000540562 PABPN1Q86U42 306 aaKnown RBP eCLIP22.12■■□□□ 1.131e-6■■■□□ 19
INO80E-203ENST00000540562 RANGAP1P46060 587 aaPredicted RBP21.99■■□□□ 1.11
INO80E-203ENST00000540562 CCER1Q8TC90 406 aaPredicted RBP21.97■■□□□ 1.11
INO80E-203ENST00000540562 NACADO15069 1562 aa21.96■■□□□ 1.11
INO80E-203ENST00000540562 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
INO80E-203ENST00000540562 ZEB1P37275 1124 aaPredicted RBP21.9■■□□□ 1.1
INO80E-203ENST00000540562 UBTFP17480 764 aaKnown RBP21.89■■□□□ 1.1
INO80E-203ENST00000540562 CCDC88BA6NC98 1476 aa21.81■■□□□ 1.08
INO80E-203ENST00000540562 SOGA1O94964 1423 aa21.76■■□□□ 1.07
INO80E-203ENST00000540562 BAZ1AQ9NRL2 1556 aaPredicted RBP21.69■■□□□ 1.06
INO80E-203ENST00000540562 RUSC2Q8N2Y8 1516 aa21.68■■□□□ 1.06
INO80E-203ENST00000540562 SCAF1Q9H7N4 1312 aaKnown RBP21.63■■□□□ 1.05
INO80E-203ENST00000540562 HNRNPUL2Q1KMD3 747 aaKnown RBP21.61■■□□□ 1.05
INO80E-203ENST00000540562 CSRNP3Q8WYN3 585 aa21.59■■□□□ 1.05
INO80E-203ENST00000540562 CEP162Q5TB80 1403 aa21.58■■□□□ 1.04
INO80E-203ENST00000540562 SMARCA4P51532 1647 aa21.52■■□□□ 1.04
INO80E-203ENST00000540562 TOP2AP11388 1531 aaKnown RBP21.5■■□□□ 1.03
INO80E-203ENST00000540562 SMARCA2P51531 1590 aa21.49■■□□□ 1.03
INO80E-203ENST00000540562 DIEXFQ68CQ4 756 aaKnown RBP21.47■■□□□ 1.03
INO80E-203ENST00000540562 YTHDC1Q96MU7 727 aaKnown RBP21.46■■□□□ 1.03
INO80E-203ENST00000540562 EIF4G1Q04637 1599 aaKnown RBP21.45■■□□□ 1.02
INO80E-203ENST00000540562 NEUROD1Q13562 356 aa21.41■■□□□ 1.02
INO80E-203ENST00000540562 UNC13AQ9UPW8 1703 aa21.39■■□□□ 1.02
INO80E-203ENST00000540562 WRNQ14191 1432 aaPredicted RBP eCLIP21.34■■□□□ 1.01
INO80E-203ENST00000540562 TNIKQ9UKE5 1360 aa21.32■■□□□ 1
INO80E-203ENST00000540562 APLP2Q06481 763 aa21.3■■□□□ 1
INO80E-203ENST00000540562 GTF3C3Q9Y5Q9 886 aa21.24■□□□□ 0.99
INO80E-203ENST00000540562 ACIN1Q9UKV3 1341 aaKnown RBP21.23■□□□□ 0.99
INO80E-203ENST00000540562 GOLGA3Q08378 1498 aa21.21■□□□□ 0.99
INO80E-203ENST00000540562 ITGAEP38570 1179 aa21.19■□□□□ 0.98
INO80E-203ENST00000540562 BICRAQ9NZM4 1560 aa21.19■□□□□ 0.98
INO80E-203ENST00000540562 CLIP1P30622 1438 aa21.17■□□□□ 0.98
INO80E-203ENST00000540562 SYNJ1O43426 1573 aa21.16■□□□□ 0.98
INO80E-203ENST00000540562 BAZ1BQ9UIG0 1483 aaKnown RBP21.12■□□□□ 0.97
INO80E-203ENST00000540562 RAPGEF2Q9Y4G8 1499 aa21.12■□□□□ 0.97
INO80E-203ENST00000540562 ZNF316A6NFI3 1004 aaPredicted RBP21.12■□□□□ 0.97
INO80E-203ENST00000540562 CENPBP07199 599 aaPredicted RBP21.08■□□□□ 0.96
INO80E-203ENST00000540562 ATAD2BQ9ULI0 1458 aa21.07■□□□□ 0.96
INO80E-203ENST00000540562 MIER1Q8N108 512 aa21.06■□□□□ 0.96
INO80E-203ENST00000540562 EEA1Q15075 1411 aa21.06■□□□□ 0.96
INO80E-203ENST00000540562 CEP164Q9UPV0 1460 aa21.03■□□□□ 0.96
INO80E-203ENST00000540562 KANK4Q5T7N3 995 aaPredicted RBP21■□□□□ 0.95
INO80E-203ENST00000540562 ATP1B4Q9UN42 357 aaPredicted RBP20.97■□□□□ 0.95
INO80E-203ENST00000540562 VPS8Q8N3P4 1428 aa20.92■□□□□ 0.94
INO80E-203ENST00000540562 P3H3Q8IVL6 736 aa20.9■□□□□ 0.94
INO80E-203ENST00000540562 KIF21BO75037 1637 aa20.81■□□□□ 0.92
INO80E-203ENST00000540562 PEG3Q9GZU2 1588 aa20.76■□□□□ 0.91
INO80E-203ENST00000540562 PELP1Q8IZL8 1130 aaKnown RBP20.71■□□□□ 0.91
INO80E-203ENST00000540562 ARAP1Q96P48 1450 aa20.69■□□□□ 0.9
INO80E-203ENST00000540562 FAM50AQ14320 339 aaKnown RBP20.69■□□□□ 0.9
INO80E-203ENST00000540562 HIRIP3Q9BW71 556 aaPredicted RBP20.66■□□□□ 0.9
INO80E-203ENST00000540562 TOP2BQ02880 1626 aa20.65■□□□□ 0.9
INO80E-203ENST00000540562 CUX1P39880 1505 aa20.64■□□□□ 0.9
INO80E-203ENST00000540562 DHX57Q6P158 1386 aaKnown RBP20.64■□□□□ 0.89
INO80E-203ENST00000540562 KIF27Q86VH2 1401 aa20.62■□□□□ 0.89
INO80E-203ENST00000540562 PRXQ9BXM0 1461 aa20.58■□□□□ 0.89
INO80E-203ENST00000540562 KCNH8Q96L42 1107 aa20.58■□□□□ 0.88
INO80E-203ENST00000540562 CUX2O14529 1486 aa20.57■□□□□ 0.88
INO80E-203ENST00000540562 SIN3AQ96ST3 1273 aa20.55■□□□□ 0.88
INO80E-203ENST00000540562 CCNB3Q8WWL7 1395 aa20.5■□□□□ 0.87
INO80E-203ENST00000540562 ARHGAP35Q9NRY4 1499 aa20.5■□□□□ 0.87
INO80E-203ENST00000540562 ARID3CA6NKF2 412 aa20.46■□□□□ 0.87
INO80E-203ENST00000540562 NCAPD3P42695 1498 aa20.46■□□□□ 0.87
INO80E-203ENST00000540562 IGF1RP08069 1367 aa20.45■□□□□ 0.86
INO80E-203ENST00000540562 BCANQ96GW7 911 aa20.44■□□□□ 0.86
INO80E-203ENST00000540562 BIVM-ERCC5R4GMW8 1640 aa20.43■□□□□ 0.86
INO80E-203ENST00000540562 RAB3GAP2Q9H2M9 1393 aa20.43■□□□□ 0.86
INO80E-203ENST00000540562 DDX10Q13206 875 aaKnown RBP20.43■□□□□ 0.86
INO80E-203ENST00000540562 CARMIL1Q5VZK9 1371 aa20.43■□□□□ 0.86
INO80E-203ENST00000540562 CFTRP13569 1480 aa20.41■□□□□ 0.86
INO80E-203ENST00000540562 ERICH3Q5RHP9 1530 aa20.39■□□□□ 0.85
INO80E-203ENST00000540562 PHLDB1Q86UU1 1377 aa20.35■□□□□ 0.85
INO80E-203ENST00000540562 FGD5Q6ZNL6 1462 aa20.35■□□□□ 0.85
INO80E-203ENST00000540562 FHOD3Q2V2M9 1422 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms