RNA–Protein interactions for RNA: ENST00000343090.10

UBE4B-202, Transcript of ubiquitination factor E4B, humanhuman

TSL 1 (best) BASIC

Gene UBE4B, Length 5,267 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-202ENST00000343090 DCAF8L2P0C7V8 631 aa14.03□□□□□ -0.16
UBE4B-202ENST00000343090 NISCHQ9Y2I1 1504 aa13.75□□□□□ -0.21
UBE4B-202ENST00000343090 SUPT5HO00267 1087 aaKnown RBP13.55□□□□□ -0.24
UBE4B-202ENST00000343090 SHROOM4Q9ULL8 1493 aa13.41□□□□□ -0.26
UBE4B-202ENST00000343090 EHMT2Q96KQ7 1210 aa13.12□□□□□ -0.31
UBE4B-202ENST00000343090 PELP1Q8IZL8 1130 aaKnown RBP12.96□□□□□ -0.34
UBE4B-202ENST00000343090 FAM9AQ8IZU1 332 aaPredicted RBP12.78□□□□□ -0.36
UBE4B-202ENST00000343090 PCGF6Q9BYE7 350 aa12.76□□□□□ -0.37
UBE4B-202ENST00000343090 MYT1Q01538 1121 aa12.7□□□□□ -0.38
UBE4B-202ENST00000343090 TTBK1Q5TCY1 1321 aaPredicted RBP12.68□□□□□ -0.38
UBE4B-202ENST00000343090 HRCP23327 699 aa12.59□□□□□ -0.39
UBE4B-202ENST00000343090 APLP2Q06481 763 aa12.52□□□□□ -0.4
UBE4B-202ENST00000343090 TRIM41Q8WV44 630 aa12.47□□□□□ -0.41
UBE4B-202ENST00000343090 RANGAP1P46060 587 aaPredicted RBP12.46□□□□□ -0.42
UBE4B-202ENST00000343090 PPARGC1BQ86YN6 1023 aaKnown RBP12.39□□□□□ -0.43
UBE4B-202ENST00000343090 CENPBP07199 599 aaPredicted RBP12.36□□□□□ -0.43
UBE4B-202ENST00000343090 CCER1Q8TC90 406 aaPredicted RBP12.36□□□□□ -0.43
UBE4B-202ENST00000343090 ZEB1P37275 1124 aaPredicted RBP12.34□□□□□ -0.43
UBE4B-202ENST00000343090 UBTFP17480 764 aaKnown RBP12.25□□□□□ -0.45
UBE4B-202ENST00000343090 LOC105371045A0A1W2PR82 267 aa12.22□□□□□ -0.45
UBE4B-202ENST00000343090 ATP1B4Q9UN42 357 aaPredicted RBP12.19□□□□□ -0.46
UBE4B-202ENST00000343090 CHIC1Q5VXU3 224 aa12.17□□□□□ -0.46
UBE4B-202ENST00000343090 YTHDC1Q96MU7 727 aaKnown RBP12.17□□□□□ -0.46
UBE4B-202ENST00000343090 TRIM26Q12899 539 aaPredicted RBP12.14□□□□□ -0.47
UBE4B-202ENST00000343090 ERICH6Q7L0X2 663 aa11.96□□□□□ -0.49
UBE4B-202ENST00000343090 ITGAEP38570 1179 aa11.94□□□□□ -0.5
UBE4B-202ENST00000343090 GTF3C3Q9Y5Q9 886 aa11.94□□□□□ -0.5
UBE4B-202ENST00000343090 HNRNPUL2Q1KMD3 747 aaKnown RBP11.92□□□□□ -0.5
UBE4B-202ENST00000343090 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.89□□□□□ -0.51
UBE4B-202ENST00000343090 SCAF1Q9H7N4 1312 aaKnown RBP11.88□□□□□ -0.51
UBE4B-202ENST00000343090 NEFLP07196 543 aa11.87□□□□□ -0.51
UBE4B-202ENST00000343090 ACIN1Q9UKV3 1341 aaKnown RBP11.84□□□□□ -0.51
UBE4B-202ENST00000343090 DIEXFQ68CQ4 756 aaKnown RBP11.8□□□□□ -0.52
UBE4B-202ENST00000343090 POLR3GLQ9BT43 218 aa11.72□□□□□ -0.53
UBE4B-202ENST00000343090 CNGB1Q14028 1251 aaPredicted RBP11.71□□□□□ -0.53
UBE4B-202ENST00000343090 ABCC9O60706 1549 aa11.7□□□□□ -0.54
UBE4B-202ENST00000343090 PABPN1Q86U42 306 aaKnown RBP eCLIP11.7□□□□□ -0.54
UBE4B-202ENST00000343090 NEUROD1Q13562 356 aa11.66□□□□□ -0.54
UBE4B-202ENST00000343090 FAM50AQ14320 339 aaKnown RBP11.59□□□□□ -0.55
UBE4B-202ENST00000343090 MYT1LQ9UL68 1186 aa11.54□□□□□ -0.56
UBE4B-202ENST00000343090 DCAF1Q9Y4B6 1507 aa11.5□□□□□ -0.57
UBE4B-202ENST00000343090 BCANQ96GW7 911 aa11.5□□□□□ -0.57
UBE4B-202ENST00000343090 TRIM52Q96A61 297 aa11.46□□□□□ -0.57
UBE4B-202ENST00000343090 ZNF316A6NFI3 1004 aaPredicted RBP11.45□□□□□ -0.58
UBE4B-202ENST00000343090 CSRNP3Q8WYN3 585 aa11.42□□□□□ -0.58
UBE4B-202ENST00000343090 ZCCHC6Q5VYS8 1495 aaKnown RBP11.42□□□□□ -0.58
UBE4B-202ENST00000343090 MYO15BQ96JP2 1530 aa11.42□□□□□ -0.58
UBE4B-202ENST00000343090 DAXXQ9UER7 740 aaPredicted RBP11.41□□□□□ -0.58
UBE4B-202ENST00000343090 P3H3Q8IVL6 736 aa11.4□□□□□ -0.58
UBE4B-202ENST00000343090 SCRIBQ14160 1630 aa11.4□□□□□ -0.58
UBE4B-202ENST00000343090 BCL11AQ9H165 835 aa11.37□□□□□ -0.59
UBE4B-202ENST00000343090 SLC4A1APQ9BWU0 796 aaKnown RBP11.37□□□□□ -0.59
UBE4B-202ENST00000343090 ZNF326Q5BKZ1 582 aaKnown RBP11.37□□□□□ -0.59
UBE4B-202ENST00000343090 ARID3CA6NKF2 412 aa11.35□□□□□ -0.59
UBE4B-202ENST00000343090 ANP32EQ9BTT0 268 aa11.35□□□□□ -0.59
UBE4B-202ENST00000343090 ANP32CO43423 234 aa11.34□□□□□ -0.59
UBE4B-202ENST00000343090 RTL5Q5HYW3 569 aaPredicted RBP11.34□□□□□ -0.59
UBE4B-202ENST00000343090 CLSPNQ9HAW4 1339 aa11.28□□□□□ -0.6
UBE4B-202ENST00000343090 FBLN2P98095 1184 aa11.27□□□□□ -0.61
UBE4B-202ENST00000343090 CCDC180Q9P1Z9 1646 aa11.26□□□□□ -0.61
UBE4B-202ENST00000343090 CDK11AQ9UQ88 783 aaPredicted RBP11.23□□□□□ -0.61
UBE4B-202ENST00000343090 MIER1Q8N108 512 aa11.22□□□□□ -0.61
UBE4B-202ENST00000343090 FKBP8Q14318 412 aa11.2□□□□□ -0.62
UBE4B-202ENST00000343090 ZNF777Q9ULD5 760 aaPredicted RBP11.17□□□□□ -0.62
UBE4B-202ENST00000343090 DDX10Q13206 875 aaKnown RBP11.16□□□□□ -0.62
UBE4B-202ENST00000343090 RSF1Q96T23 1441 aaPredicted RBP11.11□□□□□ -0.63
UBE4B-202ENST00000343090 EIF5BO60841 1220 aaKnown RBP11.11□□□□□ -0.63
UBE4B-202ENST00000343090 TONSLQ96HA7 1378 aa11.1□□□□□ -0.63
UBE4B-202ENST00000343090 HIRIP3Q9BW71 556 aaPredicted RBP11.1□□□□□ -0.63
UBE4B-202ENST00000343090 CHIC2Q9UKJ5 165 aa11.09□□□□□ -0.63
UBE4B-202ENST00000343090 HNRNPUQ00839 825 aaKnown RBP eCLIP11.08□□□□□ -0.64
UBE4B-202ENST00000343090 SUPT16HQ9Y5B9 1047 aaKnown RBP11.08□□□□□ -0.64
UBE4B-202ENST00000343090 FAM9BQ8IZU0 186 aa11.07□□□□□ -0.64
UBE4B-202ENST00000343090 NBR1Q14596 966 aa11.06□□□□□ -0.64
UBE4B-202ENST00000343090 CLIP1P30622 1438 aa11.06□□□□□ -0.64
UBE4B-202ENST00000343090 NPM2Q86SE8 214 aaKnown RBP11.05□□□□□ -0.64
UBE4B-202ENST00000343090 CEP162Q5TB80 1403 aa11.04□□□□□ -0.64
UBE4B-202ENST00000343090 CANXP27824 592 aaKnown RBP11.03□□□□□ -0.64
UBE4B-202ENST00000343090 SALL2Q9Y467 1007 aaPredicted RBP11.02□□□□□ -0.64
UBE4B-202ENST00000343090 ANP32AP39687 249 aaKnown RBP11.01□□□□□ -0.65
UBE4B-202ENST00000343090 IRX6P78412 446 aaPredicted RBP11□□□□□ -0.65
UBE4B-202ENST00000343090 TSHZ2Q9NRE2 1034 aa10.98□□□□□ -0.65
UBE4B-202ENST00000343090 GOLGA3Q08378 1498 aa10.96□□□□□ -0.66
UBE4B-202ENST00000343090 MTUS2Q5JR59 1369 aa10.94□□□□□ -0.66
UBE4B-202ENST00000343090 RRP7BPQ9NSQ0 103 aa10.94□□□□□ -0.66
UBE4B-202ENST00000343090 SLC24A1O60721 1099 aa10.93□□□□□ -0.66
UBE4B-202ENST00000343090 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.93□□□□□ -0.663e-6■□□□□ 9.2
UBE4B-202ENST00000343090 KDM2AQ9Y2K7 1162 aa10.93□□□□□ -0.66
UBE4B-202ENST00000343090 MRS2Q9HD23 443 aa10.93□□□□□ -0.66
UBE4B-202ENST00000343090 SENP3-EIF4A1A0A087X0R7 540 aa10.92□□□□□ -0.66
UBE4B-202ENST00000343090 WRNQ14191 1432 aaPredicted RBP eCLIP10.92□□□□□ -0.66
UBE4B-202ENST00000343090 ZBTB47Q9UFB7 747 aaPredicted RBP10.92□□□□□ -0.66
UBE4B-202ENST00000343090 CHGAP10645 457 aaKnown RBP10.92□□□□□ -0.66
UBE4B-202ENST00000343090 TMC1Q8TDI8 760 aa10.9□□□□□ -0.66
UBE4B-202ENST00000343090 RBM19Q9Y4C8 960 aaKnown RBP10.9□□□□□ -0.66
UBE4B-202ENST00000343090 CECR2Q9BXF3 1484 aa10.9□□□□□ -0.66
UBE4B-202ENST00000343090 TNIKQ9UKE5 1360 aa10.89□□□□□ -0.67
UBE4B-202ENST00000343090 RTN4Q9NQC3 1192 aaKnown RBP10.89□□□□□ -0.67
UBE4B-202ENST00000343090 DEKP35659 375 aaKnown RBP10.89□□□□□ -0.67
UBE4B-202ENST00000343090 GLIPR1L2Q4G1C9 344 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms