Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.55■■□□□ 1.2
UPK3AO75631 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
UPK3AO75631 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
UPK3AO75631 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
UPK3AO75631 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC22.54■■□□□ 1.2
UPK3AO75631 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
UPK3AO75631 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22.54■■□□□ 1.2
UPK3AO75631 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
UPK3AO75631 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
UPK3AO75631 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
UPK3AO75631 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
UPK3AO75631 LINC01003-201ENST00000564834 1764 ntBASIC22.53■■□□□ 1.2
UPK3AO75631 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
UPK3AO75631 DUX4L13-201ENST00000554103 1267 ntBASIC22.52■■□□□ 1.2
UPK3AO75631 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.52■■□□□ 1.2
UPK3AO75631 DUX4L15-201ENST00000611059 1267 ntBASIC22.52■■□□□ 1.2
UPK3AO75631 DUX4L23-201ENST00000615195 1269 ntBASIC22.52■■□□□ 1.2
UPK3AO75631 DUX4L24-201ENST00000617576 1269 ntBASIC22.52■■□□□ 1.2
UPK3AO75631 DUX4L22-201ENST00000618238 1269 ntBASIC22.52■■□□□ 1.2
UPK3AO75631 DUX4L20-201ENST00000619712 1269 ntBASIC22.52■■□□□ 1.2
UPK3AO75631 DUX4L21-201ENST00000622058 1269 ntBASIC22.52■■□□□ 1.2
UPK3AO75631 DUX4L10-201ENST00000622460 1267 ntBASIC22.52■■□□□ 1.2
UPK3AO75631 DUX4L25-201ENST00000624915 1269 ntBASIC22.52■■□□□ 1.2
UPK3AO75631 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
UPK3AO75631 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
UPK3AO75631 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
UPK3AO75631 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC22.51■■□□□ 1.19
UPK3AO75631 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
UPK3AO75631 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
UPK3AO75631 AC110285.7-201ENST00000624417 1536 ntBASIC22.49■■□□□ 1.19
UPK3AO75631 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
UPK3AO75631 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.49■■□□□ 1.19
UPK3AO75631 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
UPK3AO75631 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.49■■□□□ 1.19
UPK3AO75631 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPK3AO75631 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC22.48■■□□□ 1.19
UPK3AO75631 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.48■■□□□ 1.19
UPK3AO75631 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
UPK3AO75631 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPK3AO75631 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPK3AO75631 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
UPK3AO75631 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.47■■□□□ 1.19
UPK3AO75631 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC22.47■■□□□ 1.19
UPK3AO75631 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
UPK3AO75631 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
UPK3AO75631 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.46■■□□□ 1.19
UPK3AO75631 CREM-210ENST00000374721 2020 ntTSL 5 BASIC22.46■■□□□ 1.19
UPK3AO75631 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
UPK3AO75631 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
UPK3AO75631 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
UPK3AO75631 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
UPK3AO75631 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
UPK3AO75631 CR559946.2-201ENST00000623684 991 ntBASIC22.45■■□□□ 1.18
UPK3AO75631 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
UPK3AO75631 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.45■■□□□ 1.18
UPK3AO75631 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
UPK3AO75631 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
UPK3AO75631 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
UPK3AO75631 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.44■■□□□ 1.18
UPK3AO75631 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.44■■□□□ 1.18
UPK3AO75631 AP002414.2-202ENST00000590929 1450 ntBASIC22.44■■□□□ 1.18
UPK3AO75631 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
UPK3AO75631 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.43■■□□□ 1.18
UPK3AO75631 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.43■■□□□ 1.18
UPK3AO75631 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC22.43■■□□□ 1.18
UPK3AO75631 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
UPK3AO75631 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC22.42■■□□□ 1.18
UPK3AO75631 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
UPK3AO75631 MACF1-219ENST00000484793 834 ntTSL 2 BASIC22.42■■□□□ 1.18
UPK3AO75631 MIR3648-2-201ENST00000581792 180 ntBASIC22.42■■□□□ 1.18
UPK3AO75631 MIR3648-1-201ENST00000615959 180 ntBASIC22.42■■□□□ 1.18
UPK3AO75631 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.42■■□□□ 1.18
UPK3AO75631 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
UPK3AO75631 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
UPK3AO75631 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
UPK3AO75631 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
UPK3AO75631 HES6-205ENST00000409356 528 ntTSL 2 BASIC22.41■■□□□ 1.18
UPK3AO75631 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.41■■□□□ 1.18
UPK3AO75631 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
UPK3AO75631 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
UPK3AO75631 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
UPK3AO75631 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
UPK3AO75631 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
UPK3AO75631 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
UPK3AO75631 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.4■■□□□ 1.18
UPK3AO75631 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
UPK3AO75631 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.18
UPK3AO75631 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
UPK3AO75631 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
UPK3AO75631 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
UPK3AO75631 AC016575.1-201ENST00000607026 382 ntBASIC22.39■■□□□ 1.17
UPK3AO75631 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.39■■□□□ 1.17
UPK3AO75631 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
UPK3AO75631 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.17
UPK3AO75631 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
UPK3AO75631 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
UPK3AO75631 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
UPK3AO75631 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
UPK3AO75631 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
UPK3AO75631 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms