Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC33.76■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC33.75■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC33.74■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC33.74■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC33.73■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC33.71■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC33.7■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 MEST-211ENST00000437945 1455 ntTSL 5 BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC33.68■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC33.68■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC33.67■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 RARRES2P2-201ENST00000394842 485 ntBASIC33.67■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC33.64■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC33.64■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC33.64■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC33.63■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC33.62■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC33.62■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC33.62■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC33.61■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 AL121749.1-202ENST00000609313 2153 ntBASIC33.61■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 PROC-203ENST00000409048 1586 ntTSL 5 BASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 LINC01003-201ENST00000564834 1764 ntBASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 AP002414.2-202ENST00000590929 1450 ntBASIC33.59■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 AC110285.7-201ENST00000624417 1536 ntBASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC33.57■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 BX255925.1-201ENST00000566954 1854 ntBASIC33.56■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC33.55■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC33.55■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC33.55■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC33.55■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC33.55■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 PKM-203ENST00000389093 2279 ntTSL 5 BASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 CR559946.2-201ENST00000623684 991 ntBASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC33.53■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 MTURN-203ENST00000409688 843 ntTSL 2 BASIC33.52■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC33.51■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC33.51■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC33.48■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC33.48■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC33.48■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC33.48■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC33.48■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC33.48■■■□□ 2.95
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms