Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC45.1■■■■■ 4.81
SENP3-EIF4A1A0A087X0R7 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC44.64■■■■■ 4.74
SENP3-EIF4A1A0A087X0R7 AL356512.1-201ENST00000607453 1739 ntBASIC44.15■■■■■ 4.66
SENP3-EIF4A1A0A087X0R7 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC44.01■■■■■ 4.64
SENP3-EIF4A1A0A087X0R7 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC43.66■■■■■ 4.58
SENP3-EIF4A1A0A087X0R7 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC43.43■■■■■ 4.54
SENP3-EIF4A1A0A087X0R7 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC43.42■■■■■ 4.54
SENP3-EIF4A1A0A087X0R7 HES6-203ENST00000409160 1600 ntTSL 2 BASIC43.39■■■■■ 4.54
SENP3-EIF4A1A0A087X0R7 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC43.31■■■■■ 4.52
SENP3-EIF4A1A0A087X0R7 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC43.03■■■■■ 4.48
SENP3-EIF4A1A0A087X0R7 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC42.9■■■■■ 4.46
SENP3-EIF4A1A0A087X0R7 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC42.79■■■■■ 4.44
SENP3-EIF4A1A0A087X0R7 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC42.67■■■■■ 4.42
SENP3-EIF4A1A0A087X0R7 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC42.28■■■■■ 4.36
SENP3-EIF4A1A0A087X0R7 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC42.23■■■■■ 4.35
SENP3-EIF4A1A0A087X0R7 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC42.08■■■■■ 4.33
SENP3-EIF4A1A0A087X0R7 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC41.78■■■■■ 4.28
SENP3-EIF4A1A0A087X0R7 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC41.74■■■■■ 4.27
SENP3-EIF4A1A0A087X0R7 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC41.65■■■■■ 4.26
SENP3-EIF4A1A0A087X0R7 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC41.63■■■■■ 4.25
SENP3-EIF4A1A0A087X0R7 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC41.53■■■■■ 4.24
SENP3-EIF4A1A0A087X0R7 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC41.49■■■■■ 4.23
SENP3-EIF4A1A0A087X0R7 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC41.49■■■■■ 4.23
SENP3-EIF4A1A0A087X0R7 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC41.48■■■■■ 4.23
SENP3-EIF4A1A0A087X0R7 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC41.43■■■■■ 4.22
SENP3-EIF4A1A0A087X0R7 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC41.37■■■■■ 4.21
SENP3-EIF4A1A0A087X0R7 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC41.36■■■■■ 4.21
SENP3-EIF4A1A0A087X0R7 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC41.34■■■■■ 4.21
SENP3-EIF4A1A0A087X0R7 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC41.28■■■■■ 4.2
SENP3-EIF4A1A0A087X0R7 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC41.18■■■■■ 4.18
SENP3-EIF4A1A0A087X0R7 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC41.13■■■■■ 4.17
SENP3-EIF4A1A0A087X0R7 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC40.98■■■■■ 4.15
SENP3-EIF4A1A0A087X0R7 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC40.91■■■■■ 4.14
SENP3-EIF4A1A0A087X0R7 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC40.9■■■■■ 4.14
SENP3-EIF4A1A0A087X0R7 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC40.87■■■■■ 4.13
SENP3-EIF4A1A0A087X0R7 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC40.86■■■■■ 4.13
SENP3-EIF4A1A0A087X0R7 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC40.83■■■■■ 4.13
SENP3-EIF4A1A0A087X0R7 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC40.74■■■■■ 4.11
SENP3-EIF4A1A0A087X0R7 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC40.56■■■■■ 4.08
SENP3-EIF4A1A0A087X0R7 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC40.51■■■■■ 4.08
SENP3-EIF4A1A0A087X0R7 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC40.45■■■■■ 4.07
SENP3-EIF4A1A0A087X0R7 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC40.43■■■■■ 4.06
SENP3-EIF4A1A0A087X0R7 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC40.39■■■■■ 4.06
SENP3-EIF4A1A0A087X0R7 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC40.38■■■■■ 4.06
SENP3-EIF4A1A0A087X0R7 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC40.34■■■■■ 4.05
SENP3-EIF4A1A0A087X0R7 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC40.33■■■■■ 4.05
SENP3-EIF4A1A0A087X0R7 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC40.28■■■■■ 4.04
SENP3-EIF4A1A0A087X0R7 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC40.26■■■■■ 4.04
SENP3-EIF4A1A0A087X0R7 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC40.19■■■■■ 4.02
SENP3-EIF4A1A0A087X0R7 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC40.16■■■■■ 4.02
SENP3-EIF4A1A0A087X0R7 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC40.12■■■■■ 4.01
SENP3-EIF4A1A0A087X0R7 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC40.09■■■■■ 4.01
SENP3-EIF4A1A0A087X0R7 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC40.09■■■■■ 4.01
SENP3-EIF4A1A0A087X0R7 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC39.96■■■■□ 3.99
SENP3-EIF4A1A0A087X0R7 INO80B-203ENST00000409917 796 ntTSL 2 BASIC39.96■■■■□ 3.99
SENP3-EIF4A1A0A087X0R7 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC39.92■■■■□ 3.98
SENP3-EIF4A1A0A087X0R7 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC39.89■■■■□ 3.98
SENP3-EIF4A1A0A087X0R7 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC39.79■■■■□ 3.96
SENP3-EIF4A1A0A087X0R7 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC39.79■■■■□ 3.96
SENP3-EIF4A1A0A087X0R7 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC39.76■■■■□ 3.96
SENP3-EIF4A1A0A087X0R7 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC39.74■■■■□ 3.95
SENP3-EIF4A1A0A087X0R7 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC39.7■■■■□ 3.95
SENP3-EIF4A1A0A087X0R7 ZNRF2P1-201ENST00000441407 443 ntBASIC39.69■■■■□ 3.94
SENP3-EIF4A1A0A087X0R7 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC39.65■■■■□ 3.94
SENP3-EIF4A1A0A087X0R7 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC39.56■■■■□ 3.92
SENP3-EIF4A1A0A087X0R7 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
SENP3-EIF4A1A0A087X0R7 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC39.45■■■■□ 3.91
SENP3-EIF4A1A0A087X0R7 AC006077.2-201ENST00000623591 457 ntBASIC39.39■■■■□ 3.9
SENP3-EIF4A1A0A087X0R7 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC39.36■■■■□ 3.89
SENP3-EIF4A1A0A087X0R7 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
SENP3-EIF4A1A0A087X0R7 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC39.35■■■■□ 3.89
SENP3-EIF4A1A0A087X0R7 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
SENP3-EIF4A1A0A087X0R7 AC015813.7-201ENST00000623294 581 ntBASIC39.3■■■■□ 3.88
SENP3-EIF4A1A0A087X0R7 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC39.25■■■■□ 3.87
SENP3-EIF4A1A0A087X0R7 ILK-212ENST00000532063 1617 ntTSL 2 BASIC39.25■■■■□ 3.87
SENP3-EIF4A1A0A087X0R7 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC39.23■■■■□ 3.87
SENP3-EIF4A1A0A087X0R7 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
SENP3-EIF4A1A0A087X0R7 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC39.2■■■■□ 3.87
SENP3-EIF4A1A0A087X0R7 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC39.15■■■■□ 3.86
SENP3-EIF4A1A0A087X0R7 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC39.13■■■■□ 3.85
SENP3-EIF4A1A0A087X0R7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC39.12■■■■□ 3.85
SENP3-EIF4A1A0A087X0R7 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC39.06■■■■□ 3.84
SENP3-EIF4A1A0A087X0R7 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC39.06■■■■□ 3.84
SENP3-EIF4A1A0A087X0R7 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC39.04■■■■□ 3.84
SENP3-EIF4A1A0A087X0R7 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC39.03■■■■□ 3.84
SENP3-EIF4A1A0A087X0R7 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC39.02■■■■□ 3.84
SENP3-EIF4A1A0A087X0R7 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
SENP3-EIF4A1A0A087X0R7 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC38.97■■■■□ 3.83
SENP3-EIF4A1A0A087X0R7 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC38.96■■■■□ 3.83
SENP3-EIF4A1A0A087X0R7 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC38.93■■■■□ 3.82
SENP3-EIF4A1A0A087X0R7 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC38.92■■■■□ 3.82
SENP3-EIF4A1A0A087X0R7 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC38.78■■■■□ 3.8
SENP3-EIF4A1A0A087X0R7 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC38.75■■■■□ 3.79
SENP3-EIF4A1A0A087X0R7 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC38.73■■■■□ 3.79
SENP3-EIF4A1A0A087X0R7 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC38.71■■■■□ 3.79
SENP3-EIF4A1A0A087X0R7 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC38.7■■■■□ 3.79
SENP3-EIF4A1A0A087X0R7 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC38.7■■■■□ 3.79
SENP3-EIF4A1A0A087X0R7 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC38.7■■■■□ 3.79
SENP3-EIF4A1A0A087X0R7 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC38.68■■■■□ 3.78
SENP3-EIF4A1A0A087X0R7 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC38.67■■■■□ 3.78
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms