RNA–Protein interactions for RNA: YPL056C

LCL1, Transcript of Putative protein of unknown function, yeast

Gene LCL1, Length 306 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCL1	YPL056C	FAP1	P53971	965 aa		8.96	□□□□□ -0.98
LCL1	YPL056C	PRY3	P47033	881 aa		8.59	□□□□□ -1.03
LCL1	YPL056C	YCK3	P39962	524 aa		8.25	□□□□□ -1.09
LCL1	YPL056C	HAA1	Q12753	694 aa	Known RBP	7.87	□□□□□ -1.15
LCL1	YPL056C	BUD31	P25337	157 aa	Predicted RBP	7.46	□□□□□ -1.22
LCL1	YPL056C	AAD16	Q02895	342 aa		7.44	□□□□□ -1.22
LCL1	YPL056C	PRI1	P10363	409 aa		7.19	□□□□□ -1.26
LCL1	YPL056C	YGL015C	P33199	130 aa		6.79	□□□□□ -1.32
LCL1	YPL056C	SIS1	P25294	352 aa	Known RBP	6.77	□□□□□ -1.33
LCL1	YPL056C	MTC1	P47018	478 aa	Known RBP	6.75	□□□□□ -1.33
LCL1	YPL056C	TSR3	Q12094	313 aa	Known RBP	6.66	□□□□□ -1.34
LCL1	YPL056C	MRPL32	P25348	183 aa		6.31	□□□□□ -1.4
LCL1	YPL056C	RPG1	P38249	964 aa	Known RBP	6.18	□□□□□ -1.42
LCL1	YPL056C	UBP9	P39967	754 aa		6.09	□□□□□ -1.43
LCL1	YPL056C	ISW2	Q08773	1120 aa		6.07	□□□□□ -1.44
LCL1	YPL056C	RGA2	Q06407	1009 aa		6.01	□□□□□ -1.45
LCL1	YPL056C	MAP2	P38174	421 aa	Known RBP	5.76	□□□□□ -1.49
LCL1	YPL056C	UBP10	P53874	792 aa	Predicted RBP	5.74	□□□□□ -1.49
LCL1	YPL056C	CDC27	P38042	758 aa		5.67	□□□□□ -1.5
LCL1	YPL056C	TGL3	P40308	642 aa		5.55	□□□□□ -1.52
LCL1	YPL056C	TIF4632	P39936	914 aa	Known RBP	5.45	□□□□□ -1.54
LCL1	YPL056C	AIR2	Q12476	344 aa	Known RBP	5.4	□□□□□ -1.54
LCL1	YPL056C	YBL029C-A	Q3E756	94 aa		5.38	□□□□□ -1.55
LCL1	YPL056C	YJL171C	P46992	396 aa		5.33	□□□□□ -1.56
LCL1	YPL056C	RGA1	P39083	1007 aa		5.32	□□□□□ -1.56
LCL1	YPL056C	FKH1	P40466	484 aa		5.22	□□□□□ -1.57
LCL1	YPL056C	VNX1	P42839	908 aa		5.2	□□□□□ -1.58
LCL1	YPL056C	SLX5	P32828	619 aa	Known RBP	5.18	□□□□□ -1.58
LCL1	YPL056C	SCY1	P53009	804 aa		5.13	□□□□□ -1.59
LCL1	YPL056C	MST1	P07236	462 aa		5.08	□□□□□ -1.6
LCL1	YPL056C	SPP1	Q03012	353 aa		5.07	□□□□□ -1.6
LCL1	YPL056C	BMT6	Q12291	365 aa		5.06	□□□□□ -1.6
LCL1	YPL056C	YKR023W	P36119	530 aa	Known RBP	5.02	□□□□□ -1.61
LCL1	YPL056C	DCD1	P06773	312 aa		4.96	□□□□□ -1.62
LCL1	YPL056C	REB1	P21538	810 aa		4.91	□□□□□ -1.62
LCL1	YPL056C	HO	P09932	586 aa		4.87	□□□□□ -1.63
LCL1	YPL056C	TFC8	Q12308	588 aa		4.87	□□□□□ -1.63
LCL1	YPL056C	TIF11	P38912	153 aa	Known RBP	4.85	□□□□□ -1.63
LCL1	YPL056C	WSC3	Q12215	556 aa		4.84	□□□□□ -1.63
LCL1	YPL056C	YOR238W	Q08634	303 aa		4.82	□□□□□ -1.64
LCL1	YPL056C	LDB19	Q12502	818 aa		4.82	□□□□□ -1.64
LCL1	YPL056C	RPL17A	P05740	184 aa	Known RBP	4.77	□□□□□ -1.65
LCL1	YPL056C	RPL17B	P46990	184 aa	Known RBP	4.77	□□□□□ -1.65
LCL1	YPL056C	BCK2	P33306	851 aa		4.76	□□□□□ -1.65
LCL1	YPL056C	IOC2	Q12072	812 aa		4.72	□□□□□ -1.65
LCL1	YPL056C	RSE1	Q04693	1361 aa	Known RBP	4.71	□□□□□ -1.66
LCL1	YPL056C	BCH2	P36122	765 aa		4.62	□□□□□ -1.67
LCL1	YPL056C	ULI1	P43604	169 aa		4.62	□□□□□ -1.67
LCL1	YPL056C	SRC1	Q03707	834 aa		4.6	□□□□□ -1.67
LCL1	YPL056C	MON2	P48563	1636 aa	Predicted RBP	4.6	□□□□□ -1.67
LCL1	YPL056C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
LCL1	YPL056C	INO80	P53115	1489 aa		4.52	□□□□□ -1.69
LCL1	YPL056C	DPS1	P04802	557 aa	Known RBP	4.51	□□□□□ -1.69
LCL1	YPL056C	AVT3	P36062	692 aa		4.49	□□□□□ -1.69
LCL1	YPL056C	XDJ1	P39102	459 aa		4.48	□□□□□ -1.69
LCL1	YPL056C	NCR1	Q12200	1170 aa		4.48	□□□□□ -1.69
LCL1	YPL056C	RTG1	P32607	177 aa		4.46	□□□□□ -1.7
LCL1	YPL056C	SPT21	P35209	758 aa		4.46	□□□□□ -1.7
LCL1	YPL056C	CHL1	P22516	861 aa	Predicted RBP	4.4	□□□□□ -1.71
LCL1	YPL056C	YAP5	P40574	245 aa		4.4	□□□□□ -1.71
LCL1	YPL056C	YPL062W	Q02781	134 aa		4.37	□□□□□ -1.71
LCL1	YPL056C	BDF1	P35817	686 aa		4.35	□□□□□ -1.71
LCL1	YPL056C	GTT3	P39996	337 aa		4.34	□□□□□ -1.71
LCL1	YPL056C	DNA2	P38859	1522 aa		4.34	□□□□□ -1.71
LCL1	YPL056C	SWR1	Q05471	1514 aa		4.34	□□□□□ -1.71
LCL1	YPL056C	VRP1	P37370	817 aa		4.31	□□□□□ -1.72
LCL1	YPL056C	SEC61	P32915	480 aa		4.3	□□□□□ -1.72
LCL1	YPL056C	PRE3	P38624	215 aa		4.3	□□□□□ -1.72
LCL1	YPL056C	TY1B-DR4	Q07793	1604 aa		4.3	□□□□□ -1.72
LCL1	YPL056C	KOG1	P38873	1557 aa		4.29	□□□□□ -1.72
LCL1	YPL056C	TCB3	Q03640	1545 aa	Known RBP	4.28	□□□□□ -1.72
LCL1	YPL056C	SAP30	P38429	201 aa		4.28	□□□□□ -1.72
LCL1	YPL056C	EPS1	P40557	701 aa		4.28	□□□□□ -1.72
LCL1	YPL056C	YNL035C	P53962	389 aa	Known RBP	4.25	□□□□□ -1.73
LCL1	YPL056C	TRP5	P00931	707 aa	Known RBP	4.24	□□□□□ -1.73
LCL1	YPL056C	EAP1	P36041	632 aa	Known RBP	4.21	□□□□□ -1.74
LCL1	YPL056C	BFR2	Q06631	534 aa	Known RBP	4.19	□□□□□ -1.74
LCL1	YPL056C	MSB4	Q12317	492 aa		4.19	□□□□□ -1.74
LCL1	YPL056C	DIP2	Q12220	943 aa	Predicted RBP	4.15	□□□□□ -1.75
LCL1	YPL056C	SGS1	P35187	1447 aa		4.13	□□□□□ -1.75
LCL1	YPL056C	HSL1	P34244	1518 aa		4.13	□□□□□ -1.75
LCL1	YPL056C	SPT6	P23615	1451 aa	Known RBP	4.11	□□□□□ -1.75
LCL1	YPL056C	TFG1	P41895	735 aa	Predicted RBP	4.1	□□□□□ -1.75
LCL1	YPL056C	RQC2	Q12532	1038 aa	Known RBP	4.09	□□□□□ -1.75
LCL1	YPL056C	YDL129W	Q07555	291 aa		4.08	□□□□□ -1.76
LCL1	YPL056C	YDR344C	Q05510	147 aa		4.06	□□□□□ -1.76
LCL1	YPL056C	SPA2	P23201	1466 aa	Known RBP	4.05	□□□□□ -1.76
LCL1	YPL056C	SET4	P42948	560 aa		4.04	□□□□□ -1.76
LCL1	YPL056C	DAN4	P47179	1161 aa		4.04	□□□□□ -1.76
LCL1	YPL056C	YOL036W	Q08206	761 aa		4.03	□□□□□ -1.76
LCL1	YPL056C	HIR3	P47171	1648 aa		4.03	□□□□□ -1.77
LCL1	YPL056C	THO2	P53552	1597 aa	Known RBP	4.02	□□□□□ -1.77
LCL1	YPL056C	PIB1	Q06651	286 aa		4.02	□□□□□ -1.77
LCL1	YPL056C	BUD4	P47136	1447 aa		4	□□□□□ -1.77
LCL1	YPL056C	ECM5	Q03214	1411 aa		4	□□□□□ -1.77
LCL1	YPL056C	MDS3	P53094	1487 aa		3.98	□□□□□ -1.77
LCL1	YPL056C	PEP1	P32319	1579 aa		3.94	□□□□□ -1.78
LCL1	YPL056C	XRN1	P22147	1528 aa	Known RBP	3.92	□□□□□ -1.78
LCL1	YPL056C	REV3	P14284	1504 aa		3.91	□□□□□ -1.78
LCL1	YPL056C	RAS1	P01119	309 aa		3.91	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 99.6 ms