RNA–Protein interactions for RNA: YJL054W

TIM54, Transcript of Component of the mitochondrial TIM22 complex, yeastyeast

Gene TIM54, Length 1,437 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TIM54YJL054W FAP1P53971 965 aa13.25□□□□□ -0.29
TIM54YJL054W MTC1P47018 478 aaKnown RBP13.11□□□□□ -0.31
TIM54YJL054W DRS1P32892 752 aaKnown RBP13.08□□□□□ -0.32
TIM54YJL054W PRY3P47033 881 aa12.54□□□□□ -0.4
TIM54YJL054W YCK3P39962 524 aa11.82□□□□□ -0.52
TIM54YJL054W AAD16Q02895 342 aa11.65□□□□□ -0.54
TIM54YJL054W HAA1Q12753 694 aaKnown RBP11.64□□□□□ -0.55
TIM54YJL054W PRI1P10363 409 aa11.48□□□□□ -0.57
TIM54YJL054W BFR2Q06631 534 aaKnown RBP11.24□□□□□ -0.61
TIM54YJL054W DIP2Q12220 943 aaPredicted RBP11.18□□□□□ -0.62
TIM54YJL054W INO80P53115 1489 aa11.05□□□□□ -0.64
TIM54YJL054W MON2P48563 1636 aaPredicted RBP11.02□□□□□ -0.65
TIM54YJL054W AVT3P36062 692 aa10.91□□□□□ -0.66
TIM54YJL054W ISW2Q08773 1120 aa10.86□□□□□ -0.67
TIM54YJL054W RPG1P38249 964 aaKnown RBP10.84□□□□□ -0.67
TIM54YJL054W TSR3Q12094 313 aaKnown RBP10.8□□□□□ -0.68
TIM54YJL054W RSE1Q04693 1361 aaKnown RBP10.58□□□□□ -0.72
TIM54YJL054W TCB3Q03640 1545 aaKnown RBP10.55□□□□□ -0.72
TIM54YJL054W SWR1Q05471 1514 aa10.53□□□□□ -0.72
TIM54YJL054W DNA2P38859 1522 aa10.52□□□□□ -0.73
TIM54YJL054W SGS1P35187 1447 aa10.47□□□□□ -0.73
TIM54YJL054W TY1B-DR4Q07793 1604 aa10.46□□□□□ -0.73
TIM54YJL054W YGL015CP33199 130 aa10.43□□□□□ -0.74
TIM54YJL054W BUD31P25337 157 aaPredicted RBP10.41□□□□□ -0.74
TIM54YJL054W KOG1P38873 1557 aa10.37□□□□□ -0.75
TIM54YJL054W TFA1P36100 482 aa10.37□□□□□ -0.75
TIM54YJL054W MRPL32P25348 183 aa10.35□□□□□ -0.75
TIM54YJL054W RPL17AP05740 184 aaKnown RBP10.22□□□□□ -0.77
TIM54YJL054W RPL17BP46990 184 aaKnown RBP10.22□□□□□ -0.77
TIM54YJL054W REB1P21538 810 aa10.14□□□□□ -0.79
TIM54YJL054W SPT6P23615 1451 aaKnown RBP10.12□□□□□ -0.79
TIM54YJL054W HSL1P34244 1518 aa10.12□□□□□ -0.79
TIM54YJL054W SPA2P23201 1466 aaKnown RBP10.03□□□□□ -0.8
TIM54YJL054W ECM5Q03214 1411 aa9.92□□□□□ -0.82
TIM54YJL054W HIR3P47171 1648 aa9.91□□□□□ -0.82
TIM54YJL054W BUD4P47136 1447 aa9.82□□□□□ -0.84
TIM54YJL054W THO2P53552 1597 aaKnown RBP9.8□□□□□ -0.84
TIM54YJL054W XRN1P22147 1528 aaKnown RBP9.75□□□□□ -0.85
TIM54YJL054W SIS1P25294 352 aaKnown RBP9.73□□□□□ -0.85
TIM54YJL054W SPT21P35209 758 aa9.73□□□□□ -0.85
TIM54YJL054W MDS3P53094 1487 aa9.68□□□□□ -0.86
TIM54YJL054W SSN2P38931 1420 aa9.65□□□□□ -0.86
TIM54YJL054W CDC27P38042 758 aa9.65□□□□□ -0.87
TIM54YJL054W PEP1P32319 1579 aa9.62□□□□□ -0.87
TIM54YJL054W RIM101P33400 625 aa9.57□□□□□ -0.88
TIM54YJL054W REV3P14284 1504 aa9.55□□□□□ -0.88
TIM54YJL054W ATG2P53855 1592 aa9.55□□□□□ -0.88
TIM54YJL054W YKR023WP36119 530 aaKnown RBP9.48□□□□□ -0.89
TIM54YJL054W TAF2P23255 1407 aa9.47□□□□□ -0.89
TIM54YJL054W MAP2P38174 421 aaKnown RBP9.47□□□□□ -0.89
TIM54YJL054W SKI3P17883 1432 aaKnown RBP9.45□□□□□ -0.9
TIM54YJL054W SIN3P22579 1536 aa9.45□□□□□ -0.9
TIM54YJL054W BPT1P14772 1559 aa9.45□□□□□ -0.9
TIM54YJL054W UBP10P53874 792 aaPredicted RBP9.44□□□□□ -0.9
TIM54YJL054W HOP09932 586 aa9.37□□□□□ -0.91
TIM54YJL054W SSK2P53599 1579 aa9.36□□□□□ -0.91
TIM54YJL054W UBP9P39967 754 aa9.35□□□□□ -0.91
TIM54YJL054W DCD1P06773 312 aa9.31□□□□□ -0.92
TIM54YJL054W ESP1Q03018 1630 aa9.31□□□□□ -0.92
TIM54YJL054W OXP1P28273 1286 aa9.31□□□□□ -0.92
TIM54YJL054W TFC8Q12308 588 aa9.3□□□□□ -0.92
TIM54YJL054W PTP3P40048 928 aa9.28□□□□□ -0.92
TIM54YJL054W YCF1P39109 1515 aaKnown RBP9.28□□□□□ -0.92
TIM54YJL054W UFD4P33202 1483 aa9.27□□□□□ -0.92
TIM54YJL054W YIL055CP40523 627 aaKnown RBP9.26□□□□□ -0.93
TIM54YJL054W YAH1Q12184 172 aaKnown RBP9.25□□□□□ -0.93
TIM54YJL054W YPK9Q12697 1472 aa9.23□□□□□ -0.93
TIM54YJL054W SCC2Q04002 1493 aa9.21□□□□□ -0.93
TIM54YJL054W MYO2P19524 1574 aaKnown RBP9.19□□□□□ -0.94
TIM54YJL054W RPO31P04051 1460 aa9.17□□□□□ -0.94
TIM54YJL054W SSP1P38871 571 aa9.13□□□□□ -0.95
TIM54YJL054W CHD1P32657 1468 aa9.12□□□□□ -0.95
TIM54YJL054W CDC25P04821 1589 aa9.08□□□□□ -0.96
TIM54YJL054W TIF4632P39936 914 aaKnown RBP9.08□□□□□ -0.96
TIM54YJL054W SCY1P53009 804 aa9.08□□□□□ -0.96
TIM54YJL054W TGL3P40308 642 aa9.07□□□□□ -0.96
TIM54YJL054W RQC2Q12532 1038 aaKnown RBP9.07□□□□□ -0.96
TIM54YJL054W MET5P47169 1442 aa9.07□□□□□ -0.96
TIM54YJL054W RSM7P47150 247 aa9.05□□□□□ -0.96
TIM54YJL054W TOP2P06786 1428 aaKnown RBP9.05□□□□□ -0.96
TIM54YJL054W TY2B-LR1P0C2J3 1770 aa9.04□□□□□ -0.96
TIM54YJL054W TY2B-FP0CX63 1770 aa9.04□□□□□ -0.96
TIM54YJL054W TY2B-GR2P0CX64 1770 aa9.04□□□□□ -0.96
TIM54YJL054W TY2B-CP25384 1770 aa9.04□□□□□ -0.96
TIM54YJL054W TY2B-DR2Q03494 1770 aa9.04□□□□□ -0.96
TIM54YJL054W TY1B-DR1Q03855 1755 aa9.04□□□□□ -0.96
TIM54YJL054W TY2B-DR3Q07791 1770 aaKnown RBP9.04□□□□□ -0.96
TIM54YJL054W TY2B-OR1Q12113 1770 aa9.04□□□□□ -0.96
TIM54YJL054W TY2B-DR1Q12472 1770 aa9.04□□□□□ -0.96
TIM54YJL054W TY2B-OR2Q12501 1770 aa9.04□□□□□ -0.96
TIM54YJL054W DNF1P32660 1571 aa9.04□□□□□ -0.96
TIM54YJL054W BCH2P36122 765 aa9.04□□□□□ -0.96
TIM54YJL054W PAN1P32521 1480 aa9.03□□□□□ -0.96
TIM54YJL054W YLR271WQ06152 274 aa9.03□□□□□ -0.96
TIM54YJL054W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.02□□□□□ -0.97not detected
TIM54YJL054W TY1B-BRQ12193 1756 aa9□□□□□ -0.97
TIM54YJL054W TY1B-GR3Q12316 1755 aa9□□□□□ -0.97
TIM54YJL054W TY1B-ORQ92393 1755 aa9□□□□□ -0.97
TIM54YJL054W SLX5P32828 619 aaKnown RBP9□□□□□ -0.97
TIM54YJL054W ESC1Q03661 1658 aaKnown RBP8.98□□□□□ -0.97
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms