RNA–Protein interactions for RNA: YGR028W

MSP1, Transcript of Highly-conserved N-terminally anchored AAA-ATPase, yeastyeast

Gene MSP1, Length 1,089 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSP1YGR028W MTC1P47018 478 aaKnown RBP16.56■□□□□ 0.24
MSP1YGR028W DRS1P32892 752 aaKnown RBP16.25■□□□□ 0.19
MSP1YGR028W FAP1P53971 965 aa14.24□□□□□ -0.13
MSP1YGR028W DIP2Q12220 943 aaPredicted RBP13.98□□□□□ -0.17
MSP1YGR028W BFR2Q06631 534 aaKnown RBP13.92□□□□□ -0.18
MSP1YGR028W AVT3P36062 692 aa13.68□□□□□ -0.22
MSP1YGR028W ISW2Q08773 1120 aa13.61□□□□□ -0.23
MSP1YGR028W PRI1P10363 409 aa13.5□□□□□ -0.25
MSP1YGR028W PRY3P47033 881 aa13.39□□□□□ -0.27
MSP1YGR028W RPG1P38249 964 aaKnown RBP13.37□□□□□ -0.27
MSP1YGR028W AAD16Q02895 342 aa13.34□□□□□ -0.27
MSP1YGR028W RSE1Q04693 1361 aaKnown RBP13.32□□□□□ -0.28
MSP1YGR028W INO80P53115 1489 aa13.04□□□□□ -0.32
MSP1YGR028W MON2P48563 1636 aaPredicted RBP12.99□□□□□ -0.33
MSP1YGR028W TFA1P36100 482 aa12.89□□□□□ -0.35
MSP1YGR028W RPL17AP05740 184 aaKnown RBP12.8□□□□□ -0.36
MSP1YGR028W RPL17BP46990 184 aaKnown RBP12.8□□□□□ -0.36
MSP1YGR028W TSR3Q12094 313 aaKnown RBP12.74□□□□□ -0.37
MSP1YGR028W REB1P21538 810 aa12.7□□□□□ -0.38
MSP1YGR028W YCK3P39962 524 aa12.59□□□□□ -0.39
MSP1YGR028W HAA1Q12753 694 aaKnown RBP12.5□□□□□ -0.41
MSP1YGR028W SWR1Q05471 1514 aa12.46□□□□□ -0.42
MSP1YGR028W DNA2P38859 1522 aa12.43□□□□□ -0.42
MSP1YGR028W TCB3Q03640 1545 aaKnown RBP12.4□□□□□ -0.42
MSP1YGR028W MRPL32P25348 183 aa12.36□□□□□ -0.43
MSP1YGR028W SGS1P35187 1447 aa12.35□□□□□ -0.43
MSP1YGR028W TY1B-DR4Q07793 1604 aa12.31□□□□□ -0.44
MSP1YGR028W SPT21P35209 758 aa12.28□□□□□ -0.44
MSP1YGR028W KOG1P38873 1557 aa12.2□□□□□ -0.46
MSP1YGR028W RIM101P33400 625 aa12.08□□□□□ -0.48
MSP1YGR028W SPT6P23615 1451 aaKnown RBP11.98□□□□□ -0.49
MSP1YGR028W HSL1P34244 1518 aa11.97□□□□□ -0.49
MSP1YGR028W YKR023WP36119 530 aaKnown RBP11.95□□□□□ -0.5
MSP1YGR028W SPA2P23201 1466 aaKnown RBP11.89□□□□□ -0.51
MSP1YGR028W CDC27P38042 758 aa11.76□□□□□ -0.53
MSP1YGR028W TFC8Q12308 588 aa11.74□□□□□ -0.53
MSP1YGR028W HIR3P47171 1648 aa11.71□□□□□ -0.53
MSP1YGR028W ECM5Q03214 1411 aa11.71□□□□□ -0.53
MSP1YGR028W HOP09932 586 aa11.68□□□□□ -0.54
MSP1YGR028W YGL015CP33199 130 aa11.65□□□□□ -0.54
MSP1YGR028W OXP1P28273 1286 aa11.64□□□□□ -0.55
MSP1YGR028W BUD4P47136 1447 aa11.6□□□□□ -0.55
MSP1YGR028W YIL055CP40523 627 aaKnown RBP11.58□□□□□ -0.56
MSP1YGR028W XRN1P22147 1528 aaKnown RBP11.55□□□□□ -0.56
MSP1YGR028W DCD1P06773 312 aa11.55□□□□□ -0.56
MSP1YGR028W THO2P53552 1597 aaKnown RBP11.54□□□□□ -0.56
MSP1YGR028W MDS3P53094 1487 aa11.48□□□□□ -0.57
MSP1YGR028W PTP3P40048 928 aa11.47□□□□□ -0.57
MSP1YGR028W UBP10P53874 792 aaPredicted RBP11.46□□□□□ -0.57
MSP1YGR028W SSN2P38931 1420 aa11.42□□□□□ -0.58
MSP1YGR028W YAH1Q12184 172 aaKnown RBP11.41□□□□□ -0.58
MSP1YGR028W SSP1P38871 571 aa11.4□□□□□ -0.58
MSP1YGR028W BCH2P36122 765 aa11.37□□□□□ -0.59
MSP1YGR028W RSM7P47150 247 aa11.37□□□□□ -0.59
MSP1YGR028W PEP1P32319 1579 aa11.33□□□□□ -0.6
MSP1YGR028W MAP2P38174 421 aaKnown RBP11.33□□□□□ -0.6
MSP1YGR028W REV3P14284 1504 aa11.32□□□□□ -0.6
MSP1YGR028W ARP8Q12386 881 aaKnown RBP RIP-Chip data11.32□□□□□ -0.6not detected
MSP1YGR028W TAF2P23255 1407 aa11.3□□□□□ -0.6
MSP1YGR028W ATG2P53855 1592 aa11.28□□□□□ -0.6
MSP1YGR028W YLR271WQ06152 274 aa11.27□□□□□ -0.61
MSP1YGR028W SCY1P53009 804 aa11.26□□□□□ -0.61
MSP1YGR028W SKI3P17883 1432 aaKnown RBP11.23□□□□□ -0.61
MSP1YGR028W BBC1P47068 1157 aa11.2□□□□□ -0.62
MSP1YGR028W AI2P03876 854 aa11.18□□□□□ -0.62
MSP1YGR028W EPS1P40557 701 aa11.16□□□□□ -0.62
MSP1YGR028W BPT1P14772 1559 aa11.15□□□□□ -0.62
MSP1YGR028W SLX5P32828 619 aaKnown RBP11.13□□□□□ -0.63
MSP1YGR028W SIN3P22579 1536 aa11.13□□□□□ -0.63
MSP1YGR028W BDF1P35817 686 aa11.09□□□□□ -0.63
MSP1YGR028W MGA2P40578 1113 aa11.06□□□□□ -0.64
MSP1YGR028W SSK2P53599 1579 aa11.06□□□□□ -0.64
MSP1YGR028W PSD2P53037 1138 aaKnown RBP11.04□□□□□ -0.64
MSP1YGR028W TIF4632P39936 914 aaKnown RBP11.02□□□□□ -0.65
MSP1YGR028W UFD4P33202 1483 aa10.97□□□□□ -0.65
MSP1YGR028W ESP1Q03018 1630 aa10.97□□□□□ -0.65
MSP1YGR028W YCF1P39109 1515 aaKnown RBP10.96□□□□□ -0.65
MSP1YGR028W TGL3P40308 642 aa10.94□□□□□ -0.66
MSP1YGR028W SCC2Q04002 1493 aa10.88□□□□□ -0.67
MSP1YGR028W YPK9Q12697 1472 aa10.88□□□□□ -0.67
MSP1YGR028W CST9Q06032 482 aa10.88□□□□□ -0.67
MSP1YGR028W MYO2P19524 1574 aaKnown RBP10.83□□□□□ -0.68
MSP1YGR028W RQC2Q12532 1038 aaKnown RBP10.82□□□□□ -0.68
MSP1YGR028W RPO31P04051 1460 aa10.81□□□□□ -0.68
MSP1YGR028W MRM1P25270 412 aa10.79□□□□□ -0.68
MSP1YGR028W CHD1P32657 1468 aa10.76□□□□□ -0.69
MSP1YGR028W NSR1P27476 414 aaKnown RBP RIP-Chip data10.73□□□□□ -0.69not detected
MSP1YGR028W CDC25P04821 1589 aa10.73□□□□□ -0.69
MSP1YGR028W BUD31P25337 157 aaPredicted RBP10.71□□□□□ -0.69
MSP1YGR028W DNF1P32660 1571 aa10.7□□□□□ -0.7
MSP1YGR028W RTG3P38165 486 aa10.7□□□□□ -0.7
MSP1YGR028W TY2B-LR1P0C2J3 1770 aa10.65□□□□□ -0.7
MSP1YGR028W TY2B-FP0CX63 1770 aa10.65□□□□□ -0.7
MSP1YGR028W TY2B-GR2P0CX64 1770 aa10.65□□□□□ -0.7
MSP1YGR028W TY2B-CP25384 1770 aa10.65□□□□□ -0.7
MSP1YGR028W TY2B-DR2Q03494 1770 aa10.65□□□□□ -0.7
MSP1YGR028W TY1B-DR1Q03855 1755 aa10.65□□□□□ -0.7
MSP1YGR028W TY2B-DR3Q07791 1770 aaKnown RBP10.65□□□□□ -0.7
MSP1YGR028W TY2B-OR1Q12113 1770 aa10.65□□□□□ -0.7
MSP1YGR028W TY2B-DR1Q12472 1770 aa10.65□□□□□ -0.7
Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms