RNA–Protein interactions for RNA: YFR001W

LOC1, Nuclear protein involved in asymmetric localization of ASH1 mRNA, yeastyeast

Gene LOC1, Length 615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LOC1YFR001W FAP1P53971 965 aa13.72□□□□□ -0.21
LOC1YFR001W PRY3P47033 881 aa13.01□□□□□ -0.33
LOC1YFR001W MTC1P47018 478 aaKnown RBP12.71□□□□□ -0.37
LOC1YFR001W YCK3P39962 524 aa12.29□□□□□ -0.44
LOC1YFR001W HAA1Q12753 694 aaKnown RBP12.06□□□□□ -0.48
LOC1YFR001W AAD16Q02895 342 aa12.04□□□□□ -0.48
LOC1YFR001W PRI1P10363 409 aa11.87□□□□□ -0.51
LOC1YFR001W DRS1P32892 752 aaKnown RBP11.84□□□□□ -0.51
LOC1YFR001W TSR3Q12094 313 aaKnown RBP11.11□□□□□ -0.63
LOC1YFR001W ISW2Q08773 1120 aa10.95□□□□□ -0.66
LOC1YFR001W RPG1P38249 964 aaKnown RBP10.92□□□□□ -0.66
LOC1YFR001W BUD31P25337 157 aaPredicted RBP10.82□□□□□ -0.68
LOC1YFR001W YGL015CP33199 130 aa10.78□□□□□ -0.68
LOC1YFR001W MRPL32P25348 183 aa10.65□□□□□ -0.7
LOC1YFR001W DIP2Q12220 943 aaPredicted RBP10.37□□□□□ -0.75
LOC1YFR001W SIS1P25294 352 aaKnown RBP10.08□□□□□ -0.8
LOC1YFR001W BFR2Q06631 534 aaKnown RBP10.06□□□□□ -0.8
LOC1YFR001W AVT3P36062 692 aa10.04□□□□□ -0.8
LOC1YFR001W RSE1Q04693 1361 aaKnown RBP10.02□□□□□ -0.8
LOC1YFR001W CDC27P38042 758 aa9.8□□□□□ -0.84
LOC1YFR001W UBP10P53874 792 aaPredicted RBP9.76□□□□□ -0.85
LOC1YFR001W MAP2P38174 421 aaKnown RBP9.72□□□□□ -0.85
LOC1YFR001W RPL17AP05740 184 aaKnown RBP9.71□□□□□ -0.86
LOC1YFR001W RPL17BP46990 184 aaKnown RBP9.71□□□□□ -0.86
LOC1YFR001W UBP9P39967 754 aa9.67□□□□□ -0.86
LOC1YFR001W REB1P21538 810 aa9.64□□□□□ -0.87
LOC1YFR001W TFA1P36100 482 aa9.36□□□□□ -0.91
LOC1YFR001W TGL3P40308 642 aa9.35□□□□□ -0.91
LOC1YFR001W TIF4632P39936 914 aaKnown RBP9.34□□□□□ -0.91
LOC1YFR001W SPT21P35209 758 aa9.33□□□□□ -0.92
LOC1YFR001W YKR023WP36119 530 aaKnown RBP9.27□□□□□ -0.93
LOC1YFR001W SCY1P53009 804 aa9.15□□□□□ -0.94
LOC1YFR001W SLX5P32828 619 aaKnown RBP9.14□□□□□ -0.95
LOC1YFR001W DCD1P06773 312 aa9.11□□□□□ -0.95
LOC1YFR001W HOP09932 586 aa9.08□□□□□ -0.96
LOC1YFR001W TFC8Q12308 588 aa9.07□□□□□ -0.96
LOC1YFR001W RIM101P33400 625 aa9.01□□□□□ -0.97
LOC1YFR001W YBL029C-AQ3E756 94 aa8.93□□□□□ -0.98
LOC1YFR001W MST1P07236 462 aa8.75□□□□□ -1.01
LOC1YFR001W VNX1P42839 908 aa8.73□□□□□ -1.01
LOC1YFR001W AIR2Q12476 344 aaKnown RBP8.73□□□□□ -1.01
LOC1YFR001W BCH2P36122 765 aa8.72□□□□□ -1.01
LOC1YFR001W OXP1P28273 1286 aa8.7□□□□□ -1.02
LOC1YFR001W YJL171CP46992 396 aa8.7□□□□□ -1.02
LOC1YFR001W SPP1Q03012 353 aa8.63□□□□□ -1.03
LOC1YFR001W FKH1P40466 484 aa8.62□□□□□ -1.03
LOC1YFR001W YOR238WQ08634 303 aa8.58□□□□□ -1.04
LOC1YFR001W YIL055CP40523 627 aaKnown RBP8.53□□□□□ -1.04
LOC1YFR001W PTP3P40048 928 aa8.51□□□□□ -1.05
LOC1YFR001W EPS1P40557 701 aa8.5□□□□□ -1.05
LOC1YFR001W BDF1P35817 686 aa8.47□□□□□ -1.05
LOC1YFR001W WSC3Q12215 556 aa8.46□□□□□ -1.06
LOC1YFR001W RSM7P47150 247 aa8.43□□□□□ -1.06
LOC1YFR001W BMT6Q12291 365 aa8.42□□□□□ -1.06
LOC1YFR001W TIF11P38912 153 aaKnown RBP8.41□□□□□ -1.06
LOC1YFR001W YAH1Q12184 172 aaKnown RBP8.4□□□□□ -1.06
LOC1YFR001W AI2P03876 854 aa8.35□□□□□ -1.07
LOC1YFR001W NSR1P27476 414 aaKnown RBP RIP-Chip data8.35□□□□□ -1.07not detected
LOC1YFR001W BBC1P47068 1157 aa8.34□□□□□ -1.07
LOC1YFR001W YLR271WQ06152 274 aa8.31□□□□□ -1.08
LOC1YFR001W LDB19Q12502 818 aa8.31□□□□□ -1.08
LOC1YFR001W RGA2Q06407 1009 aa8.3□□□□□ -1.08
LOC1YFR001W SSP1P38871 571 aa8.23□□□□□ -1.09
LOC1YFR001W YAP5P40574 245 aa8.23□□□□□ -1.09
LOC1YFR001W IOC2Q12072 812 aa8.2□□□□□ -1.1
LOC1YFR001W PSD2P53037 1138 aaKnown RBP8.19□□□□□ -1.1
LOC1YFR001W ULI1P43604 169 aa8.17□□□□□ -1.1
LOC1YFR001W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.13□□□□□ -1.11not detected
LOC1YFR001W GTT3P39996 337 aa8.11□□□□□ -1.11
LOC1YFR001W MRM1P25270 412 aa8.04□□□□□ -1.12
LOC1YFR001W CST9Q06032 482 aa8.01□□□□□ -1.13
LOC1YFR001W MGA2P40578 1113 aa8□□□□□ -1.13
LOC1YFR001W BCK2P33306 851 aa7.97□□□□□ -1.13
LOC1YFR001W RTG1P32607 177 aa7.95□□□□□ -1.14
LOC1YFR001W NCR1Q12200 1170 aa7.94□□□□□ -1.14
LOC1YFR001W PIB1Q06651 286 aa7.9□□□□□ -1.14
LOC1YFR001W VPS29P38759 282 aa7.89□□□□□ -1.15
LOC1YFR001W RTG3P38165 486 aa7.88□□□□□ -1.15
LOC1YFR001W EAP1P36041 632 aaKnown RBP7.85□□□□□ -1.15
LOC1YFR001W RGA1P39083 1007 aa7.85□□□□□ -1.15
LOC1YFR001W YMR1P47147 688 aaKnown RBP RIP-Chip data7.85□□□□□ -1.15not detected
LOC1YFR001W MSB4Q12317 492 aa7.85□□□□□ -1.15
LOC1YFR001W DBP1P24784 617 aaKnown RBP7.82□□□□□ -1.16
LOC1YFR001W RCR1P38212 213 aa7.81□□□□□ -1.16
LOC1YFR001W SEC61P32915 480 aa7.8□□□□□ -1.16
LOC1YFR001W STS1P38637 319 aa7.8□□□□□ -1.16
LOC1YFR001W TRP5P00931 707 aaKnown RBP7.79□□□□□ -1.16
LOC1YFR001W YFR006WP43590 535 aa7.79□□□□□ -1.16
LOC1YFR001W YNL035CP53962 389 aaKnown RBP7.77□□□□□ -1.17
LOC1YFR001W VMA1P17255 1071 aaKnown RBP7.75□□□□□ -1.17
LOC1YFR001W CHL1P22516 861 aaPredicted RBP7.73□□□□□ -1.17
LOC1YFR001W YOL036WQ08206 761 aa7.73□□□□□ -1.17
LOC1YFR001W SAM3Q08986 587 aa7.71□□□□□ -1.18
LOC1YFR001W SET4P42948 560 aa7.7□□□□□ -1.18
LOC1YFR001W SAP30P38429 201 aa7.69□□□□□ -1.18
LOC1YFR001W RQC2Q12532 1038 aaKnown RBP7.69□□□□□ -1.18
LOC1YFR001W XDJ1P39102 459 aa7.65□□□□□ -1.18
LOC1YFR001W TFG1P41895 735 aaPredicted RBP7.65□□□□□ -1.18
LOC1YFR001W PRE3P38624 215 aa7.64□□□□□ -1.19
LOC1YFR001W DMA1P38823 416 aa7.63□□□□□ -1.19
Retrieved 100 of 5,963 RNA–protein pairs in 29.1 ms