Protein–RNA interactions for Protein: P38759

VPS29, Vacuolar protein sorting-associated protein 29, yeastyeast

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS29P38759 YML009W-BYML009W-B 477 nt23.13■■□□□ 1.29
VPS29P38759 NOP1YDL014W 984 nt22.61■■□□□ 1.21
VPS29P38759 NSR1YGR159C 1245 nt22.6■■□□□ 1.21
VPS29P38759 YKL036CYKL036C 393 nt21.23■□□□□ 0.99
VPS29P38759 YJL027CYJL027C 417 nt19.92■□□□□ 0.78
VPS29P38759 Q0297Q0297 156 nt19.89■□□□□ 0.77
VPS29P38759 SRX1YKL086W 384 nt19.75■□□□□ 0.75
VPS29P38759 MDJ1YFL016C 1536 nt19.75■□□□□ 0.75
VPS29P38759 SCS3YGL126W 1143 nt19.53■□□□□ 0.72
VPS29P38759 YCR051WYCR051W 669 nt18.83■□□□□ 0.6
VPS29P38759 YOL085CYOL085C 342 nt18.39■□□□□ 0.53
VPS29P38759 PKP1YIL042C 1185 nt18.12■□□□□ 0.49
VPS29P38759 RPP1BYDL130W 321 nt17.88■□□□□ 0.45
VPS29P38759 SCJ1YMR214W 1134 nt17.72■□□□□ 0.43
VPS29P38759 TRN1tP(UGG)A 72 nt17.61■□□□□ 0.41
VPS29P38759 SUF9tP(UGG)F 72 nt17.61■□□□□ 0.41
VPS29P38759 SUF8tP(UGG)H 72 nt17.61■□□□□ 0.41
VPS29P38759 tP(UGG)LtP(UGG)L 72 nt17.61■□□□□ 0.41
VPS29P38759 SUF7tP(UGG)M 72 nt17.61■□□□□ 0.41
VPS29P38759 tP(UGG)N1tP(UGG)N1 72 nt17.61■□□□□ 0.41
VPS29P38759 tP(UGG)N2tP(UGG)N2 72 nt17.61■□□□□ 0.41
VPS29P38759 tP(UGG)O1tP(UGG)O1 72 nt17.61■□□□□ 0.41
VPS29P38759 SUF11tP(UGG)O2 72 nt17.61■□□□□ 0.41
VPS29P38759 DBP2YNL112W 1641 nt17.6■□□□□ 0.41
VPS29P38759 ATS1YAL020C 1002 nt17.58■□□□□ 0.4
VPS29P38759 CCC1YLR220W 969 nt17.54■□□□□ 0.4
VPS29P38759 YGR139WYGR139W 339 nt17.22■□□□□ 0.35
VPS29P38759 PET122YER153C 765 nt17.05■□□□□ 0.32
VPS29P38759 SCR1SCR1 522 nt16.97■□□□□ 0.31
VPS29P38759 tP(UGG)O3tP(UGG)O3 72 nt16.83■□□□□ 0.28
VPS29P38759 YBR190WYBR190W 312 nt16.69■□□□□ 0.26
VPS29P38759 MOT3YMR070W 1473 nt16.65■□□□□ 0.26
VPS29P38759 RVS167YDR388W 1449 nt16.64■□□□□ 0.25
VPS29P38759 RRN5YLR141W 1092 nt16.62■□□□□ 0.25
VPS29P38759 Q0182Q0182 405 nt16.49■□□□□ 0.23
VPS29P38759 RTC3YHR087W 336 nt16.42■□□□□ 0.22
VPS29P38759 RSB1YOR049C 1065 nt16.4■□□□□ 0.22
VPS29P38759 YER088W-BYER088W-B 147 nt16.28■□□□□ 0.2
VPS29P38759 YDJ1YNL064C 1230 nt16.23■□□□□ 0.19
VPS29P38759 PST2YDR032C 597 nt16.21■□□□□ 0.19
VPS29P38759 SHR5YOL110W 714 nt16.14■□□□□ 0.17
VPS29P38759 NME1NME1 340 nt15.97■□□□□ 0.15
VPS29P38759 GAR1YHR089C 618 nt15.89■□□□□ 0.13
VPS29P38759 YKL097CYKL097C 411 nt15.78■□□□□ 0.12
VPS29P38759 DEP1YAL013W 1218 nt15.64■□□□□ 0.09
VPS29P38759 CSM2YIL132C 642 nt15.52■□□□□ 0.08
VPS29P38759 URN1YPR152C 1398 nt15.49■□□□□ 0.07
VPS29P38759 SHU1YHL006C 453 nt15.48■□□□□ 0.07
VPS29P38759 YNL208WYNL208W 600 nt15.36■□□□□ 0.05
VPS29P38759 TIR1YER011W 765 nt15.31■□□□□ 0.04
VPS29P38759 RPN10YHR200W 807 nt15.31■□□□□ 0.04
VPS29P38759 PAU21YOR394W 495 nt15.3■□□□□ 0.04
VPS29P38759 PAU22YPL282C 495 nt15.3■□□□□ 0.04
VPS29P38759 YAL037C-BYAL037C-B 975 nt15.18■□□□□ 0.02
VPS29P38759 OPI9YLR338W 858 nt15.15■□□□□ 0.02
VPS29P38759 ARO7YPR060C 771 nt15.13■□□□□ 0.01
VPS29P38759 YOR139CYOR139C 393 nt15.08■□□□□ 0
VPS29P38759 SSA1YAL005C 1929 nt15.05■□□□□ -0
VPS29P38759 SAH1YER043C 1350 nt14.99□□□□□ -0.01
VPS29P38759 PAM17YKR065C 594 nt14.94□□□□□ -0.02
VPS29P38759 VAR1Q0140 1197 nt14.92□□□□□ -0.02
VPS29P38759 SRB2YHR041C 633 nt14.89□□□□□ -0.03
VPS29P38759 NPL3YDR432W 1245 nt14.87□□□□□ -0.03
VPS29P38759 PUT4YOR348C 1884 nt14.86□□□□□ -0.03
VPS29P38759 YDR509WYDR509W 348 nt14.79□□□□□ -0.04
VPS29P38759 YJR018WYJR018W 363 nt14.79□□□□□ -0.04
VPS29P38759 REG2YBR050C 1017 nt14.76□□□□□ -0.05
VPS29P38759 ARE1YCR048W 1833 nt14.73□□□□□ -0.05
VPS29P38759 WWM1YFL010C 636 nt14.72□□□□□ -0.05
VPS29P38759 MNP1YGL068W 585 nt14.71□□□□□ -0.05
VPS29P38759 YGR021WYGR021W 873 nt14.7□□□□□ -0.06
VPS29P38759 PUN1YLR414C 792 nt14.7□□□□□ -0.06
VPS29P38759 HOM6YJR139C 1080 nt14.68□□□□□ -0.06
VPS29P38759 YJR120WYJR120W 351 nt14.61□□□□□ -0.07
VPS29P38759 RPP2BYDR382W 333 nt14.59□□□□□ -0.07
VPS29P38759 YOL037CYOL037C 354 nt14.55□□□□□ -0.08
VPS29P38759 YHR049C-AYHR049C-A 297 nt14.54□□□□□ -0.08
VPS29P38759 BUR6YER159C 429 nt14.52□□□□□ -0.09
VPS29P38759 PTC2YER089C 1395 nt14.49□□□□□ -0.09
VPS29P38759 POA1YBR022W 534 nt14.49□□□□□ -0.09
VPS29P38759 BMT5YIL096C 1011 nt14.48□□□□□ -0.09
VPS29P38759 tM(CAU)CtM(CAU)C 72 nt14.47□□□□□ -0.09
VPS29P38759 IMT4tM(CAU)E 72 nt14.47□□□□□ -0.09
VPS29P38759 IMT3tM(CAU)J3 72 nt14.47□□□□□ -0.09
VPS29P38759 IMT1tM(CAU)O1 72 nt14.47□□□□□ -0.09
VPS29P38759 IMT2tM(CAU)P 72 nt14.47□□□□□ -0.09
VPS29P38759 RKM5YLR137W 1104 nt14.47□□□□□ -0.09
VPS29P38759 YFL021C-AYFL021C-A 855 nt14.42□□□□□ -0.1
VPS29P38759 Q0010Q0010 387 nt14.39□□□□□ -0.11
VPS29P38759 BDH2YAL061W 1254 nt14.36□□□□□ -0.11
VPS29P38759 SSA3YBL075C 1950 nt14.32□□□□□ -0.12
VPS29P38759 BUD23YCR047C 828 nt14.29□□□□□ -0.12
VPS29P38759 Q0144Q0144 330 nt14.27□□□□□ -0.13
VPS29P38759 PUS2YGL063W 1113 nt14.26□□□□□ -0.13
VPS29P38759 LSM3YLR438C-A 270 nt14.23□□□□□ -0.13
VPS29P38759 NAB2YGL122C 1578 nt14.22□□□□□ -0.13
VPS29P38759 YLR281CYLR281C 468 nt14.22□□□□□ -0.13
VPS29P38759 YIR018C-AYIR018C-A 138 nt14.21□□□□□ -0.13
VPS29P38759 INM2YDR287W 879 nt14.19□□□□□ -0.14
VPS29P38759 SEM1YDR363W-A 270 nt14.19□□□□□ -0.14
Retrieved 100 of 7,029 protein–RNA pairs in 15.3 ms