RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C AIM20P40451 204 aa5.55□□□□□ -1.52
NUP116YMR047C FAR11P53917 953 aa5.55□□□□□ -1.52
NUP116YMR047C LAP2Q10740 671 aa5.55□□□□□ -1.52
NUP116YMR047C BDP1P46678 594 aa5.55□□□□□ -1.52
NUP116YMR047C ANP1P32629 500 aa5.54□□□□□ -1.52
NUP116YMR047C SLA1P32790 1244 aa5.54□□□□□ -1.52
NUP116YMR047C UGA4P32837 571 aa5.54□□□□□ -1.52
NUP116YMR047C MAL31P38156 614 aa5.54□□□□□ -1.52
NUP116YMR047C MSC7P38694 644 aa5.54□□□□□ -1.52
NUP116YMR047C SLN1P39928 1220 aaPredicted RBP5.54□□□□□ -1.52
NUP116YMR047C PEX29Q03370 554 aa5.54□□□□□ -1.52
NUP116YMR047C AFT1P22149 690 aa5.54□□□□□ -1.52
NUP116YMR047C PSR1Q07800 427 aa5.54□□□□□ -1.52
NUP116YMR047C RIM20Q12033 661 aa5.54□□□□□ -1.52
NUP116YMR047C UBR2Q07963 1872 aa5.54□□□□□ -1.52
NUP116YMR047C MCM4P30665 933 aaKnown RBP5.54□□□□□ -1.52
NUP116YMR047C AAP1P37898 856 aaKnown RBP5.54□□□□□ -1.52
NUP116YMR047C GRS1P38088 690 aaKnown RBP5.54□□□□□ -1.52
NUP116YMR047C PHO88P38264 188 aaPredicted RBP5.54□□□□□ -1.52
NUP116YMR047C NKP2Q06162 153 aa5.54□□□□□ -1.52
NUP116YMR047C CSC1Q06538 782 aa5.54□□□□□ -1.52
NUP116YMR047C POL3P15436 1097 aa5.53□□□□□ -1.52
NUP116YMR047C RAD51P25454 400 aa5.53□□□□□ -1.52
NUP116YMR047C MCR1P36060 302 aaKnown RBP5.53□□□□□ -1.52
NUP116YMR047C VPS45P38932 577 aa5.53□□□□□ -1.52
NUP116YMR047C YGR035CP53222 116 aa5.53□□□□□ -1.52
NUP116YMR047C PTA1Q01329 785 aaPredicted RBP5.53□□□□□ -1.52
NUP116YMR047C VPS72Q03388 795 aa5.53□□□□□ -1.52
NUP116YMR047C ISW2Q08773 1120 aa5.53□□□□□ -1.52
NUP116YMR047C YLL054CQ12244 843 aa5.53□□□□□ -1.52
NUP116YMR047C CHS3P29465 1165 aa5.53□□□□□ -1.52
NUP116YMR047C RIM101P33400 625 aa5.53□□□□□ -1.52
NUP116YMR047C PIM1P36775 1133 aa5.53□□□□□ -1.52
NUP116YMR047C STM1P39015 273 aaKnown RBP5.53□□□□□ -1.52
NUP116YMR047C MRD1Q06106 887 aaKnown RBP5.53□□□□□ -1.52
NUP116YMR047C BCS1P32839 456 aa5.53□□□□□ -1.52
NUP116YMR047C RRP8P38961 392 aaKnown RBP5.53□□□□□ -1.52
NUP116YMR047C VPS53P47061 822 aa5.53□□□□□ -1.52
NUP116YMR047C LSB1P53281 241 aa5.53□□□□□ -1.52
NUP116YMR047C UFD2P54860 961 aa5.53□□□□□ -1.52
NUP116YMR047C RPT6Q01939 405 aaKnown RBP5.53□□□□□ -1.52
NUP116YMR047C ERP3Q12403 225 aa5.53□□□□□ -1.52
NUP116YMR047C SRP54P20424 541 aaKnown RBP5.52□□□□□ -1.53
NUP116YMR047C MAK31P23059 88 aa5.52□□□□□ -1.53
NUP116YMR047C UTR4P32626 227 aa5.52□□□□□ -1.53
NUP116YMR047C TFC4P33339 1025 aa5.52□□□□□ -1.53
NUP116YMR047C GPT2P36148 743 aa5.52□□□□□ -1.53
NUP116YMR047C CCT3P39077 534 aaKnown RBP5.52□□□□□ -1.53
NUP116YMR047C VPS8P39702 1274 aa5.52□□□□□ -1.53
NUP116YMR047C APL5Q08951 932 aaKnown RBP5.52□□□□□ -1.53
NUP116YMR047C VPS5Q92331 675 aa5.52□□□□□ -1.53
NUP116YMR047C PHO87P25360 923 aa5.52□□□□□ -1.53
NUP116YMR047C SRO9P25567 434 aaKnown RBP5.52□□□□□ -1.53
NUP116YMR047C HMF1P40037 129 aaKnown RBP5.52□□□□□ -1.53
NUP116YMR047C YMR147WP40218 223 aaKnown RBP5.52□□□□□ -1.53
NUP116YMR047C TPM2P40414 161 aa5.52□□□□□ -1.53
NUP116YMR047C YJR107WP47145 328 aa5.52□□□□□ -1.53
NUP116YMR047C MDM1Q01846 1127 aa5.52□□□□□ -1.53
NUP116YMR047C TMA64Q04600 565 aaKnown RBP5.52□□□□□ -1.53
NUP116YMR047C SRS2P12954 1174 aa5.51□□□□□ -1.53
NUP116YMR047C UIP5P36137 443 aa5.51□□□□□ -1.53
NUP116YMR047C BRL1P38770 471 aa5.51□□□□□ -1.53
NUP116YMR047C PIB2P53191 635 aa5.51□□□□□ -1.53
NUP116YMR047C RNR3P21672 869 aaKnown RBP5.51□□□□□ -1.53
NUP116YMR047C DBP7P36120 742 aaKnown RBP5.51□□□□□ -1.53
NUP116YMR047C UBP9P39967 754 aa5.51□□□□□ -1.53
NUP116YMR047C SMC3P47037 1230 aa5.51□□□□□ -1.53
NUP116YMR047C TRM11Q12463 433 aa5.51□□□□□ -1.53
NUP116YMR047C POX1P13711 748 aa5.51□□□□□ -1.53
NUP116YMR047C PUP2P32379 260 aa5.51□□□□□ -1.53
NUP116YMR047C VIP1Q06685 1146 aaKnown RBP5.51□□□□□ -1.53
NUP116YMR047C RPC31P17890 251 aa5.5□□□□□ -1.53
NUP116YMR047C BUD2P33314 1104 aa5.5□□□□□ -1.53
NUP116YMR047C RER2P35196 286 aa5.5□□□□□ -1.53
NUP116YMR047C MED8P38304 223 aa5.5□□□□□ -1.53
NUP116YMR047C AFG3P39925 761 aa5.5□□□□□ -1.53
NUP116YMR047C SNF7P39929 240 aaKnown RBP5.5□□□□□ -1.53
NUP116YMR047C MGA2P40578 1113 aa5.5□□□□□ -1.53
NUP116YMR047C VPS30Q02948 557 aa5.5□□□□□ -1.53
NUP116YMR047C DSE3Q08729 430 aa5.5□□□□□ -1.53
NUP116YMR047C BYE1P36106 594 aa5.5□□□□□ -1.53
NUP116YMR047C LIF1P53150 421 aa5.5□□□□□ -1.53
NUP116YMR047C PEP3P27801 918 aa5.49□□□□□ -1.53
NUP116YMR047C RPC82P32349 654 aa5.49□□□□□ -1.53
NUP116YMR047C CBF5P33322 483 aaKnown RBP RIP-Chip data5.49□□□□□ -1.53not detected
NUP116YMR047C LAM1P38851 1228 aa5.49□□□□□ -1.53
NUP116YMR047C DJP1P40564 432 aa5.49□□□□□ -1.53
NUP116YMR047C GCR2Q01722 534 aa5.49□□□□□ -1.53
NUP116YMR047C CUS1Q02554 436 aaPredicted RBP5.49□□□□□ -1.53
NUP116YMR047C DUS4Q06063 367 aa5.49□□□□□ -1.53
NUP116YMR047C YLR326WQ06170 240 aaKnown RBP5.49□□□□□ -1.53
NUP116YMR047C TKL1P23254 680 aaKnown RBP5.49□□□□□ -1.53
NUP116YMR047C RPL8BP29453 256 aaKnown RBP5.49□□□□□ -1.53
NUP116YMR047C RFC1P38630 861 aaKnown RBP5.49□□□□□ -1.53
NUP116YMR047C ATG32P40458 529 aa5.49□□□□□ -1.53
NUP116YMR047C YOR131CQ12486 218 aa5.49□□□□□ -1.53
NUP116YMR047C PAN5P38787 379 aa5.49□□□□□ -1.53
NUP116YMR047C ECM1P39715 212 aa5.49□□□□□ -1.53
NUP116YMR047C UBP10P53874 792 aaPredicted RBP5.49□□□□□ -1.53
NUP116YMR047C CHO2P05374 869 aaKnown RBP5.48□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 72 ms