RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C MON2P48563 1636 aaPredicted RBP10.27□□□□□ -0.76
NUP116YMR047C INO80P53115 1489 aa9.92□□□□□ -0.82
NUP116YMR047C TCB3Q03640 1545 aaKnown RBP9.86□□□□□ -0.83
NUP116YMR047C TY1B-DR4Q07793 1604 aa9.85□□□□□ -0.83
NUP116YMR047C SWR1Q05471 1514 aa9.73□□□□□ -0.85
NUP116YMR047C KOG1P38873 1557 aa9.6□□□□□ -0.87
NUP116YMR047C SGS1P35187 1447 aa9.55□□□□□ -0.88
NUP116YMR047C DNA2P38859 1522 aa9.54□□□□□ -0.88
NUP116YMR047C HSL1P34244 1518 aa9.39□□□□□ -0.91
NUP116YMR047C SPT6P23615 1451 aaKnown RBP9.31□□□□□ -0.92
NUP116YMR047C THO2P53552 1597 aaKnown RBP9.24□□□□□ -0.93
NUP116YMR047C HIR3P47171 1648 aa9.18□□□□□ -0.94
NUP116YMR047C SPA2P23201 1466 aaKnown RBP9.12□□□□□ -0.95
NUP116YMR047C BUD4P47136 1447 aa9.03□□□□□ -0.96
NUP116YMR047C SIN3P22579 1536 aa8.99□□□□□ -0.97
NUP116YMR047C PEP1P32319 1579 aa8.98□□□□□ -0.97
NUP116YMR047C MDS3P53094 1487 aa8.95□□□□□ -0.98
NUP116YMR047C SSK2P53599 1579 aa8.93□□□□□ -0.98
NUP116YMR047C ATG2P53855 1592 aa8.92□□□□□ -0.98
NUP116YMR047C ECM5Q03214 1411 aa8.91□□□□□ -0.98
NUP116YMR047C SSN2P38931 1420 aa8.9□□□□□ -0.99
NUP116YMR047C XRN1P22147 1528 aaKnown RBP8.89□□□□□ -0.99
NUP116YMR047C RSE1Q04693 1361 aaKnown RBP8.89□□□□□ -0.99
NUP116YMR047C REV3P14284 1504 aa8.87□□□□□ -0.99
NUP116YMR047C ESP1Q03018 1630 aa8.73□□□□□ -1.01
NUP116YMR047C BPT1P14772 1559 aa8.69□□□□□ -1.02
NUP116YMR047C MYO2P19524 1574 aaKnown RBP8.67□□□□□ -1.02
NUP116YMR047C YPK9Q12697 1472 aa8.62□□□□□ -1.03
NUP116YMR047C YCF1P39109 1515 aaKnown RBP8.58□□□□□ -1.04
NUP116YMR047C RPO31P04051 1460 aa8.55□□□□□ -1.04
NUP116YMR047C SCC2Q04002 1493 aa8.54□□□□□ -1.04
NUP116YMR047C TY2B-LR1P0C2J3 1770 aa8.49□□□□□ -1.05
NUP116YMR047C TY2B-FP0CX63 1770 aa8.49□□□□□ -1.05
NUP116YMR047C TY2B-GR2P0CX64 1770 aa8.49□□□□□ -1.05
NUP116YMR047C TY2B-CP25384 1770 aa8.49□□□□□ -1.05
NUP116YMR047C TY2B-DR2Q03494 1770 aa8.49□□□□□ -1.05
NUP116YMR047C TY1B-DR1Q03855 1755 aa8.49□□□□□ -1.05
NUP116YMR047C TY2B-DR3Q07791 1770 aaKnown RBP8.49□□□□□ -1.05
NUP116YMR047C TY2B-OR1Q12113 1770 aa8.49□□□□□ -1.05
NUP116YMR047C TY2B-DR1Q12472 1770 aa8.49□□□□□ -1.05
NUP116YMR047C TY2B-OR2Q12501 1770 aa8.49□□□□□ -1.05
NUP116YMR047C TY1B-BRQ12193 1756 aa8.48□□□□□ -1.05
NUP116YMR047C TY1B-GR3Q12316 1755 aa8.48□□□□□ -1.05
NUP116YMR047C TY1B-ORQ92393 1755 aa8.48□□□□□ -1.05
NUP116YMR047C SKI3P17883 1432 aaKnown RBP8.46□□□□□ -1.06
NUP116YMR047C CDC25P04821 1589 aa8.45□□□□□ -1.06
NUP116YMR047C UFD4P33202 1483 aa8.43□□□□□ -1.06
NUP116YMR047C TAF2P23255 1407 aa8.42□□□□□ -1.06
NUP116YMR047C TY1B-HO13535 1793 aa8.41□□□□□ -1.06
NUP116YMR047C TY1B-DR5P0C2I2 1755 aa8.41□□□□□ -1.06
NUP116YMR047C TY1B-DR6P0C2I3 1755 aa8.41□□□□□ -1.06
NUP116YMR047C TY1B-LR2P0C2I5 1755 aa8.41□□□□□ -1.06
NUP116YMR047C TY1B-LR3P0C2I6 1755 aaKnown RBP8.41□□□□□ -1.06
NUP116YMR047C TY1B-PR1P0C2I9 1755 aaKnown RBP8.41□□□□□ -1.06
NUP116YMR047C TY1B-PR2P0C2J0 1756 aa8.41□□□□□ -1.06
NUP116YMR047C TY1B-PR3P0C2J1 1755 aaKnown RBP8.41□□□□□ -1.06
NUP116YMR047C TY1B-JR1P47098 1755 aa8.41□□□□□ -1.06
NUP116YMR047C TY1B-ML2Q03434 1755 aaKnown RBP8.41□□□□□ -1.06
NUP116YMR047C TY1B-ER1Q03612 1755 aa8.41□□□□□ -1.06
NUP116YMR047C TY1B-ML1Q04711 1755 aaKnown RBP8.41□□□□□ -1.06
NUP116YMR047C TY1B-GR2Q12269 1755 aa8.41□□□□□ -1.06
NUP116YMR047C TY1B-OLQ12273 1755 aa8.41□□□□□ -1.06
NUP116YMR047C TY1B-PLQ12414 1755 aaKnown RBP8.41□□□□□ -1.06
NUP116YMR047C MET5P47169 1442 aa8.41□□□□□ -1.06
NUP116YMR047C TY2B-BQ12491 1770 aa8.4□□□□□ -1.06
NUP116YMR047C TY1B-DR3Q99231 1755 aa8.39□□□□□ -1.07
NUP116YMR047C ESC1Q03661 1658 aaKnown RBP8.37□□□□□ -1.07
NUP116YMR047C DRS1P32892 752 aaKnown RBP8.37□□□□□ -1.07
NUP116YMR047C TOP2P06786 1428 aaKnown RBP8.37□□□□□ -1.07
NUP116YMR047C RPA190P10964 1664 aaKnown RBP8.37□□□□□ -1.07
NUP116YMR047C POL1P13382 1468 aa8.36□□□□□ -1.07
NUP116YMR047C CHD1P32657 1468 aa8.36□□□□□ -1.07
NUP116YMR047C RKR1Q04781 1562 aa8.35□□□□□ -1.07
NUP116YMR047C PAN1P32521 1480 aa8.32□□□□□ -1.08
NUP116YMR047C SMC4Q12267 1418 aa8.31□□□□□ -1.08
NUP116YMR047C DNF1P32660 1571 aa8.28□□□□□ -1.08
NUP116YMR047C YOR1P53049 1477 aa8.28□□□□□ -1.08
NUP116YMR047C LTE1P07866 1435 aa8.27□□□□□ -1.09
NUP116YMR047C MMS22Q06164 1454 aa8.23□□□□□ -1.09
NUP116YMR047C TY1B-JR2P47100 1755 aaKnown RBP8.22□□□□□ -1.09
NUP116YMR047C TY1B-ER2Q03619 1755 aa8.22□□□□□ -1.09
NUP116YMR047C TY1B-MR1Q04214 1755 aa8.22□□□□□ -1.09
NUP116YMR047C TY1B-MR2Q04670 1755 aaKnown RBP8.22□□□□□ -1.09
NUP116YMR047C TY1B-LR1Q12088 1755 aaKnown RBP8.22□□□□□ -1.09
NUP116YMR047C TY1B-NL1Q12112 1755 aa8.22□□□□□ -1.09
NUP116YMR047C TY1B-GR1Q12141 1755 aa8.22□□□□□ -1.09
NUP116YMR047C TY1B-BLQ12490 1755 aa8.22□□□□□ -1.09
NUP116YMR047C NTE1Q04958 1679 aa8.22□□□□□ -1.09
NUP116YMR047C MTC1P47018 478 aaKnown RBP8.21□□□□□ -1.09
NUP116YMR047C RPO21P04050 1733 aaKnown RBP8.2□□□□□ -1.1
NUP116YMR047C STU1P38198 1513 aa8.19□□□□□ -1.1
NUP116YMR047C MYO4P32492 1471 aa8.17□□□□□ -1.1
NUP116YMR047C YRF1-1P0CX20 1796 aa8.15□□□□□ -1.1
NUP116YMR047C YRF1-5P0CX21 1796 aa8.15□□□□□ -1.1
NUP116YMR047C YRF1-8P0CX22 1796 aa8.15□□□□□ -1.1
NUP116YMR047C BNI1P41832 1953 aa8.14□□□□□ -1.11
NUP116YMR047C VTH1P40438 1549 aa8.11□□□□□ -1.11
NUP116YMR047C VTH2P40890 1549 aa8.11□□□□□ -1.11
NUP116YMR047C SPP41P38904 1435 aa8.11□□□□□ -1.11
NUP116YMR047C GEA2P39993 1459 aaKnown RBP8.11□□□□□ -1.11
Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms