Protein–RNA interactions for Protein: P47061

VPS53, Vacuolar protein sorting-associated protein 53, yeastyeast

Predictions only

Length 822 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS53P47061 YML009W-BYML009W-B 477 nt22.97■■□□□ 1.27
VPS53P47061 NOP1YDL014W 984 nt22.58■■□□□ 1.21
VPS53P47061 NSR1YGR159C 1245 nt22.49■■□□□ 1.19
VPS53P47061 YKL036CYKL036C 393 nt21.18■□□□□ 0.98
VPS53P47061 YJL027CYJL027C 417 nt19.85■□□□□ 0.77
VPS53P47061 Q0297Q0297 156 nt19.84■□□□□ 0.77
VPS53P47061 SRX1YKL086W 384 nt19.67■□□□□ 0.74
VPS53P47061 MDJ1YFL016C 1536 nt19.64■□□□□ 0.73
VPS53P47061 SCS3YGL126W 1143 nt19.44■□□□□ 0.7
VPS53P47061 YCR051WYCR051W 669 nt18.7■□□□□ 0.58
VPS53P47061 YOL085CYOL085C 342 nt18.29■□□□□ 0.52
VPS53P47061 PKP1YIL042C 1185 nt17.93■□□□□ 0.46
VPS53P47061 SCJ1YMR214W 1134 nt17.84■□□□□ 0.45
VPS53P47061 RPP1BYDL130W 321 nt17.81■□□□□ 0.44
VPS53P47061 TRN1tP(UGG)A 72 nt17.52■□□□□ 0.4
VPS53P47061 SUF9tP(UGG)F 72 nt17.52■□□□□ 0.4
VPS53P47061 SUF8tP(UGG)H 72 nt17.52■□□□□ 0.4
VPS53P47061 tP(UGG)LtP(UGG)L 72 nt17.52■□□□□ 0.4
VPS53P47061 SUF7tP(UGG)M 72 nt17.52■□□□□ 0.4
VPS53P47061 tP(UGG)N1tP(UGG)N1 72 nt17.52■□□□□ 0.4
VPS53P47061 tP(UGG)N2tP(UGG)N2 72 nt17.52■□□□□ 0.4
VPS53P47061 tP(UGG)O1tP(UGG)O1 72 nt17.52■□□□□ 0.4
VPS53P47061 SUF11tP(UGG)O2 72 nt17.52■□□□□ 0.4
VPS53P47061 ATS1YAL020C 1002 nt17.51■□□□□ 0.39
VPS53P47061 DBP2YNL112W 1641 nt17.48■□□□□ 0.39
VPS53P47061 CCC1YLR220W 969 nt17.34■□□□□ 0.37
VPS53P47061 SCR1SCR1 522 nt16.96■□□□□ 0.31
VPS53P47061 PET122YER153C 765 nt16.92■□□□□ 0.3
VPS53P47061 YBR190WYBR190W 312 nt16.72■□□□□ 0.27
VPS53P47061 tP(UGG)O3tP(UGG)O3 72 nt16.71■□□□□ 0.27
VPS53P47061 RVS167YDR388W 1449 nt16.6■□□□□ 0.25
VPS53P47061 RRN5YLR141W 1092 nt16.48■□□□□ 0.23
VPS53P47061 RTC3YHR087W 336 nt16.33■□□□□ 0.2
VPS53P47061 RSB1YOR049C 1065 nt16.3■□□□□ 0.2
VPS53P47061 YDJ1YNL064C 1230 nt16.2■□□□□ 0.18
VPS53P47061 YER088W-BYER088W-B 147 nt16.15■□□□□ 0.18
VPS53P47061 PST2YDR032C 597 nt16.13■□□□□ 0.17
VPS53P47061 SHR5YOL110W 714 nt16.07■□□□□ 0.16
VPS53P47061 YKL097CYKL097C 411 nt15.77■□□□□ 0.12
VPS53P47061 GAR1YHR089C 618 nt15.73■□□□□ 0.11
VPS53P47061 SSA3YBL075C 1950 nt15.73■□□□□ 0.11
VPS53P47061 DEP1YAL013W 1218 nt15.4■□□□□ 0.06
VPS53P47061 URN1YPR152C 1398 nt15.37■□□□□ 0.05
VPS53P47061 SHU1YHL006C 453 nt15.36■□□□□ 0.05
VPS53P47061 RPN10YHR200W 807 nt15.3■□□□□ 0.04
VPS53P47061 YNL208WYNL208W 600 nt15.28■□□□□ 0.04
VPS53P47061 TIR1YER011W 765 nt15.2■□□□□ 0.02
VPS53P47061 OPI9YLR338W 858 nt15.13■□□□□ 0.01
VPS53P47061 PUT4YOR348C 1884 nt15.02■□□□□ -0
VPS53P47061 YOR139CYOR139C 393 nt14.97□□□□□ -0.01
VPS53P47061 SAH1YER043C 1350 nt14.96□□□□□ -0.02
VPS53P47061 YAL037C-BYAL037C-B 975 nt14.95□□□□□ -0.02
VPS53P47061 SSA1YAL005C 1929 nt14.88□□□□□ -0.03
VPS53P47061 NPL3YDR432W 1245 nt14.86□□□□□ -0.03
VPS53P47061 ARE1YCR048W 1833 nt14.81□□□□□ -0.04
VPS53P47061 YGR021WYGR021W 873 nt14.71□□□□□ -0.05
VPS53P47061 PUN1YLR414C 792 nt14.7□□□□□ -0.06
VPS53P47061 YJR018WYJR018W 363 nt14.69□□□□□ -0.06
VPS53P47061 SRB2YHR041C 633 nt14.62□□□□□ -0.07
VPS53P47061 YHR049C-AYHR049C-A 297 nt14.61□□□□□ -0.07
VPS53P47061 HOM6YJR139C 1080 nt14.6□□□□□ -0.07
VPS53P47061 YOL037CYOL037C 354 nt14.59□□□□□ -0.07
VPS53P47061 RPP2BYDR382W 333 nt14.56□□□□□ -0.08
VPS53P47061 WWM1YFL010C 636 nt14.56□□□□□ -0.08
VPS53P47061 MNP1YGL068W 585 nt14.56□□□□□ -0.08
VPS53P47061 POA1YBR022W 534 nt14.55□□□□□ -0.08
VPS53P47061 YJR120WYJR120W 351 nt14.52□□□□□ -0.09
VPS53P47061 PTC2YER089C 1395 nt14.46□□□□□ -0.1
VPS53P47061 RKM5YLR137W 1104 nt14.4□□□□□ -0.1
VPS53P47061 YFL021C-AYFL021C-A 855 nt14.38□□□□□ -0.11
VPS53P47061 tM(CAU)CtM(CAU)C 72 nt14.38□□□□□ -0.11
VPS53P47061 IMT4tM(CAU)E 72 nt14.38□□□□□ -0.11
VPS53P47061 IMT3tM(CAU)J3 72 nt14.38□□□□□ -0.11
VPS53P47061 IMT1tM(CAU)O1 72 nt14.38□□□□□ -0.11
VPS53P47061 IMT2tM(CAU)P 72 nt14.38□□□□□ -0.11
VPS53P47061 BDH2YAL061W 1254 nt14.28□□□□□ -0.12
VPS53P47061 BUD23YCR047C 828 nt14.27□□□□□ -0.13
VPS53P47061 NAB2YGL122C 1578 nt14.26□□□□□ -0.13
VPS53P47061 BSC6YOL137W 1494 nt14.2□□□□□ -0.14
VPS53P47061 LSM3YLR438C-A 270 nt14.2□□□□□ -0.14
VPS53P47061 INM2YDR287W 879 nt14.15□□□□□ -0.14
VPS53P47061 PUS2YGL063W 1113 nt14.15□□□□□ -0.14
VPS53P47061 YLR281CYLR281C 468 nt14.15□□□□□ -0.14
VPS53P47061 DAL1YIR027C 1383 nt14.11□□□□□ -0.15
VPS53P47061 FIS1YIL065C 468 nt14.08□□□□□ -0.16
VPS53P47061 WHI5YOR083W 888 nt14.05□□□□□ -0.16
VPS53P47061 FPR4YLR449W 1179 nt14.04□□□□□ -0.16
VPS53P47061 YBL100CYBL100C 315 nt14.04□□□□□ -0.16
VPS53P47061 MOT3YMR070W 1473 nt14□□□□□ -0.17
VPS53P47061 SPT5YML010W 3192 nt13.98□□□□□ -0.17
VPS53P47061 PHO4YFR034C 939 nt13.97□□□□□ -0.17
VPS53P47061 TRM9YML014W 840 nt13.96□□□□□ -0.17
VPS53P47061 FUN26YAL022C 1554 nt13.88□□□□□ -0.19
VPS53P47061 SSA4YER103W 1929 nt13.86□□□□□ -0.19
VPS53P47061 IMP2'YIL154C 1041 nt13.84□□□□□ -0.19
VPS53P47061 DSK2YMR276W 1122 nt13.83□□□□□ -0.2
VPS53P47061 FMP45YDL222C 930 nt13.8□□□□□ -0.2
VPS53P47061 CCT6YDR188W 1641 nt13.77□□□□□ -0.21
VPS53P47061 YLR154C-GYLR154C-G 150 nt13.74□□□□□ -0.21
VPS53P47061 YCH1YGR203W 447 nt13.71□□□□□ -0.21
Retrieved 100 of 7,029 protein–RNA pairs in 6.5 ms