RNA–Protein interactions for RNA: YGL172W

NUP49, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP49, Length 1,419 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP49	YGL172W	RPN10	P38886	268 aa	Known RBP	7.73	□□□□□ -1.17
NUP49	YGL172W	SPR3	P41901	512 aa		7.73	□□□□□ -1.17
NUP49	YGL172W	LSB1	P53281	241 aa		7.73	□□□□□ -1.17
NUP49	YGL172W	YDR341C	Q05506	607 aa	Known RBP	7.73	□□□□□ -1.17
NUP49	YGL172W	YLR407W	Q06070	228 aa		7.73	□□□□□ -1.17
NUP49	YGL172W	PSK2	Q08217	1101 aa		7.73	□□□□□ -1.17
NUP49	YGL172W	DSE3	Q08729	430 aa		7.73	□□□□□ -1.17
NUP49	YGL172W	STI1	P15705	589 aa	Known RBP RIP-Chip data	7.72	□□□□□ -1.17	not detected
NUP49	YGL172W	RXT2	P38255	430 aa		7.72	□□□□□ -1.17
NUP49	YGL172W	TOM71	P38825	639 aa	Known RBP	7.72	□□□□□ -1.17
NUP49	YGL172W	ATF2	P53296	535 aa		7.72	□□□□□ -1.17
NUP49	YGL172W	SAM1	P10659	382 aa	Known RBP	7.71	□□□□□ -1.17
NUP49	YGL172W	VMA2	P16140	517 aa	Known RBP	7.71	□□□□□ -1.17
NUP49	YGL172W	CDC60	P26637	1090 aa	Known RBP	7.71	□□□□□ -1.17
NUP49	YGL172W	SEC20	P28791	383 aa		7.71	□□□□□ -1.17
NUP49	YGL172W	NDT80	P38830	627 aa		7.71	□□□□□ -1.17
NUP49	YGL172W	PCI8	P40512	444 aa		7.71	□□□□□ -1.17
NUP49	YGL172W	SGD1	Q06132	899 aa		7.71	□□□□□ -1.17
NUP49	YGL172W	VIP1	Q06685	1146 aa	Known RBP	7.71	□□□□□ -1.17
NUP49	YGL172W	ELG1	Q12050	791 aa		7.71	□□□□□ -1.17
NUP49	YGL172W	HSP82	P02829	709 aa	Known RBP	7.7	□□□□□ -1.18
NUP49	YGL172W	CPA2	P03965	1118 aa	Known RBP	7.7	□□□□□ -1.18
NUP49	YGL172W	RPL8A	P17076	256 aa	Known RBP	7.7	□□□□□ -1.18
NUP49	YGL172W	TTI1	P36097	1038 aa		7.7	□□□□□ -1.18
NUP49	YGL172W	TPM2	P40414	161 aa		7.7	□□□□□ -1.18
NUP49	YGL172W	FMS1	P50264	508 aa		7.7	□□□□□ -1.18
NUP49	YGL172W	ASE1	P50275	885 aa		7.7	□□□□□ -1.18
NUP49	YGL172W	YGL081W	P53156	320 aa		7.7	□□□□□ -1.18
NUP49	YGL172W	ALD6	P54115	500 aa	Known RBP	7.7	□□□□□ -1.18
NUP49	YGL172W	GDE1	Q02979	1223 aa		7.7	□□□□□ -1.18
NUP49	YGL172W	GIS4	Q04233	774 aa		7.7	□□□□□ -1.18
NUP49	YGL172W	SRF1	Q12516	437 aa		7.7	□□□□□ -1.18
NUP49	YGL172W	CDC6	P09119	513 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	BIK1	P11709	440 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	CBP3	P21560	335 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	EUG1	P32474	517 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	RFC5	P38251	354 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	TMA64	Q04600	565 aa	Known RBP	7.69	□□□□□ -1.18
NUP49	YGL172W	VPS1	P21576	704 aa	Known RBP	7.69	□□□□□ -1.18
NUP49	YGL172W	PWP2	P25635	923 aa	Known RBP	7.69	□□□□□ -1.18
NUP49	YGL172W	UTR4	P32626	227 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	TGL1	P34163	548 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	SHP1	P34223	423 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	PRX1	P34227	261 aa	Known RBP	7.69	□□□□□ -1.18
NUP49	YGL172W	YKR018C	P36114	725 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	GPB2	P39717	880 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	SLX8	P40072	274 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	ATG1	P53104	897 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	PEX14	P53112	341 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	YLR225C	Q05948	407 aa	Known RBP	7.69	□□□□□ -1.18
NUP49	YGL172W	SMD2	Q06217	110 aa	Known RBP	7.69	□□□□□ -1.18
NUP49	YGL172W	CSC1	Q06538	782 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	YPL150W	Q12152	901 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	TY3A-G	Q12173	290 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	RKM4	Q12504	494 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	TY3A-I	Q99219	290 aa		7.69	□□□□□ -1.18
NUP49	YGL172W	PKC1	P24583	1151 aa		7.68	□□□□□ -1.18
NUP49	YGL172W	CCT3	P39077	534 aa	Known RBP	7.68	□□□□□ -1.18
NUP49	YGL172W	YAP5	P40574	245 aa		7.68	□□□□□ -1.18
NUP49	YGL172W	YGL138C	P53122	345 aa		7.68	□□□□□ -1.18
NUP49	YGL172W	DUS3	Q06053	668 aa	Known RBP	7.68	□□□□□ -1.18
NUP49	YGL172W	OXR1	Q08952	273 aa		7.68	□□□□□ -1.18
NUP49	YGL172W	YBL029C-A	Q3E756	94 aa		7.68	□□□□□ -1.18
NUP49	YGL172W	MYO1	P08964	1928 aa		7.67	□□□□□ -1.18
NUP49	YGL172W	COX6	P00427	148 aa		7.67	□□□□□ -1.18
NUP49	YGL172W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	7.67	□□□□□ -1.18	not detected
NUP49	YGL172W	VPS29	P38759	282 aa		7.67	□□□□□ -1.18
NUP49	YGL172W	NCS6	P53088	359 aa		7.67	□□□□□ -1.18
NUP49	YGL172W	PIL1	P53252	339 aa	Known RBP	7.67	□□□□□ -1.18
NUP49	YGL172W	NAF1	P53919	492 aa	Known RBP	7.67	□□□□□ -1.18
NUP49	YGL172W	YAF9	P53930	226 aa		7.67	□□□□□ -1.18
NUP49	YGL172W	TFB3	Q03290	321 aa		7.67	□□□□□ -1.18
NUP49	YGL172W	DUS4	Q06063	367 aa		7.67	□□□□□ -1.18
NUP49	YGL172W	SPH1	Q06160	661 aa		7.67	□□□□□ -1.18
NUP49	YGL172W	CEX1	Q12453	761 aa		7.67	□□□□□ -1.18
NUP49	YGL172W	CDC19	P00549	500 aa	Known RBP	7.66	□□□□□ -1.18
NUP49	YGL172W	SRP40	P32583	406 aa	Predicted RBP	7.66	□□□□□ -1.18
NUP49	YGL172W	SAS3	P34218	831 aa		7.66	□□□□□ -1.18
NUP49	YGL172W	MAL33	P38157	468 aa		7.66	□□□□□ -1.18
NUP49	YGL172W	LIF1	P53150	421 aa		7.66	□□□□□ -1.18
NUP49	YGL172W	BNI5	P53890	448 aa	Known RBP	7.66	□□□□□ -1.18
NUP49	YGL172W	HRQ1	Q05549	1077 aa		7.66	□□□□□ -1.18
NUP49	YGL172W	DCS2	Q12123	353 aa		7.66	□□□□□ -1.18
NUP49	YGL172W	GET3	Q12154	354 aa	Known RBP	7.66	□□□□□ -1.18
NUP49	YGL172W	RDS1	P25611	832 aa		7.65	□□□□□ -1.18
NUP49	YGL172W	MCR1	P36060	302 aa	Known RBP	7.65	□□□□□ -1.18
NUP49	YGL172W	SUL1	P38359	859 aa		7.65	□□□□□ -1.18
NUP49	YGL172W	PAN5	P38787	379 aa		7.65	□□□□□ -1.18
NUP49	YGL172W	YGR125W	P53273	1036 aa		7.65	□□□□□ -1.18
NUP49	YGL172W	YGR273C	P53329	174 aa		7.65	□□□□□ -1.18
NUP49	YGL172W	BUL2	Q03758	920 aa	Known RBP	7.65	□□□□□ -1.18
NUP49	YGL172W	NBL1	Q3E7Y6	73 aa		7.65	□□□□□ -1.18
NUP49	YGL172W	PGI1	P12709	554 aa	Known RBP	7.64	□□□□□ -1.19
NUP49	YGL172W	ASF1	P32447	279 aa		7.64	□□□□□ -1.19
NUP49	YGL172W	UGA4	P32837	571 aa		7.64	□□□□□ -1.19
NUP49	YGL172W	VPS24	P36095	224 aa	Known RBP	7.64	□□□□□ -1.19
NUP49	YGL172W	DSE4	P53753	1117 aa		7.64	□□□□□ -1.19
NUP49	YGL172W	SLD5	Q03406	294 aa		7.64	□□□□□ -1.19
NUP49	YGL172W	TRS120	Q04183	1289 aa		7.64	□□□□□ -1.19
NUP49	YGL172W	AIM33	Q04516	312 aa		7.64	□□□□□ -1.19

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms